Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g044375.1 Solanum lycopersicum HOM05D003109 ORTHO05D003578 7.3e-33 143.3 71 100.0
Sopen01g018350 Solanum pennellii HOM05D003109 ORTHO05D003578 9.5e-17 89.7 83 63.9
PGSC0003DMG400015860 Solanum tuberosum HOM05D003109 ORTHO05D003578 8.1e-16 86.7 83 60.2
Haze_05250 Corylus avellana HOM05D003109 ORTHO05D003578 3.9e-10 67.8 76 51.3
arahy.Tifrunner.gnm1.ann1.QDY45T Arachis hypogaea HOM05D003109 ORTHO05D003578 6.6e-10 67.0 80 48.8
CAN.G97.16 Capsicum annuum HOM05D003109 ORTHO05D003578 6.6e-10 67.0 86 52.3
QL10p022110 Quercus lobata HOM05D003109 ORTHO05D003578 6.6e-10 67.0 80 48.8
MBI18_g01517_MAGBIO Magnolia biondii HOM05D003109 ORTHO05D003578 8.6e-10 66.6 80 45.0
Duzib187G1888 Durio zibethinus HOM05D003109 ORTHO05D003578 1.1e-09 66.2 77 50.6
Lj1A1150T110 Lonicera japonica HOM05D003109 ORTHO05D003578 1.1e-09 66.2 78 48.7
TAR627G0606 Trochodendron aralioides HOM05D003109 ORTHO05D003578 1.1e-09 66.2 80 47.5
Nitab4.5_0004630g0010 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.5e-09 65.9 77 53.2
CSS0007059 Camellia sinensis var. sinensis HOM05D003109 ORTHO05D003578 1.9e-09 65.5 78 50.0
Cfa001141 Carpinus fangiana HOM05D003109 ORTHO05D003578 1.9e-09 65.5 77 49.4
Cc09_g04980 Coffea canephora HOM05D003109 ORTHO05D003578 3.3e-09 64.7 76 50.0
Sabra03G0112100 Salix brachista HOM05D003109 ORTHO05D003578 4.3e-09 64.3 76 48.7
vmacro03561 Vaccinium macrocarpon HOM05D003109 ORTHO05D003578 5.6e-09 63.9 77 49.4
Potri.003G154900 Populus trichocarpa HOM05D003109 ORTHO05D003578 9.5e-09 63.2 76 48.7
Rhsim07G0107500 Rhododendron simsii HOM05D003109 ORTHO05D003578 9.5e-09 63.2 77 48.1
CARHR178180 Cardamine hirsuta HOM05D003109 ORTHO05D003578 1.2e-08 62.8 79 44.3
MD10G1226500 Malus domestica HOM05D003109 ORTHO05D003578 1.2e-08 62.8 76 50.0
Nitab4.5_0001499g0020 Nicotiana tabacum HOM05D003109 ORTHO05D003578 1.2e-08 62.8 71 54.9
Aa31LG6G12320 Aethionema arabicum HOM05D000969 ORTHO05D000899 1.6e-08 62.4 75 44.0
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.6e-08 62.4 79 43.0
TWI38G1552 Tripterygium wilfordii HOM05D003109 ORTHO05D003578 1.6e-08 62.4 83 45.8
AL8G14810 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 2.8e-08 61.6 79 44.3
Dinv26304 Davidia involucrata HOM05D003109 ORTHO05D003578 2.8e-08 61.6 75 48.0
Prupe.1G101100 Prunus persica HOM05D003109 ORTHO05D003578 2.8e-08 61.6 82 42.7
Thecc.09G141000 Theobroma cacao HOM05D003109 ORTHO05D003578 2.8e-08 61.6 76 47.4
BcaC06g31591 Brassica carinata HOM05D003109 ORTHO05D003578 3.6e-08 61.2 79 44.3
BraA06t27571Z Brassica rapa HOM05D003109 ORTHO05D003578 3.6e-08 61.2 79 44.3
Carub.0008s0354 Capsella rubella HOM05D003109 ORTHO05D003578 3.6e-08 61.2 79 44.3
CAN.G809.44 Capsicum annuum HOM05D003109 ORTHO05D003578 3.6e-08 61.2 72 51.4
PGSC0003DMG400007330 Solanum tuberosum HOM05D003109 ORTHO05D003578 3.6e-08 61.2 72 51.4
BcaC06g34519 Brassica carinata HOM05D003109 ORTHO05D003578 4.7e-08 60.8 79 44.3
C07p27620 Brassica napus HOM05D003109 ORTHO05D003578 4.7e-08 60.8 79 44.3
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 4.7e-08 60.8 79 44.3
Gohir.A05G011600 Gossypium hirsutum HOM05D003109 ORTHO05D003578 4.7e-08 60.8 76 48.7
Gohir.D05G012300 Gossypium hirsutum HOM05D003109 ORTHO05D003578 4.7e-08 60.8 76 48.7
Gohir.D05G012500 Gossypium hirsutum HOM05D003109 ORTHO05D003578 4.7e-08 60.8 76 48.7
Gorai.009G012600 Gossypium raimondii HOM05D003109 ORTHO05D003578 4.7e-08 60.8 76 48.7
DCAR_003753 Daucus carota HOM05D003109 ORTHO05D003578 6.2e-08 60.5 77 45.5
FAN21G0114 Fragaria x ananassa HOM05D003109 ORTHO05D003578 8.1e-08 60.1 83 42.2
Nn7g38363 Nelumbo nucifera HOM05D003109 ORTHO05D003578 8.1e-08 60.1 82 43.9
Sp2g09530 Schrenkiella parvula HOM05D003109 ORTHO05D003578 8.1e-08 60.1 79 43.0
Solyc02g081880.3 Solanum lycopersicum HOM05D003109 ORTHO05D003578 8.1e-08 60.1 72 51.4
Sopen02g026500 Solanum pennellii HOM05D003109 ORTHO05D003578 8.1e-08 60.1 72 51.4
CANSAT35G0308 Cannabis sativa HOM05D003109 ORTHO05D003578 1.1e-07 59.7 71 49.3
ClCG01G025830 Citrullus lanatus HOM05D003109 ORTHO05D003578 1.1e-07 59.7 76 46.1
Eucgr.E04318 Eucalyptus grandis HOM05D003109 ORTHO05D003578 1.1e-07 59.7 74 48.6
Lj2A342T113 Lonicera japonica HOM05D003109 ORTHO05D003578 1.1e-07 59.7 76 47.4
RcHm_v2.0_Chr5g0021291 Rosa chinensis HOM05D003109 ORTHO05D003578 1.1e-07 59.7 83 42.2
GSVIVG01012158001 Vitis vinifera HOM05D003109 ORTHO05D003578 1.1e-07 59.7 76 44.7
Atru.chr10.286 Acer truncatum HOM05D003109 ORTHO05D003578 1.8e-07 58.9 77 44.2
AT5G44720 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 1.8e-07 58.9 74 44.6
AUR62025463 Chenopodium quinoa HOM05D003109 ORTHO05D003578 1.8e-07 58.9 74 44.6
MELO3C007005.2 Cucumis melo HOM05D003109 ORTHO05D003578 1.8e-07 58.9 76 46.1
FvH4_3g13081 Fragaria vesca HOM05D003109 ORTHO05D003578 1.8e-07 58.9 75 45.3
FAN11G2415 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.8e-07 58.9 75 45.3
AT1G30910 Arabidopsis thaliana HOM05D003109 ORTHO05D003578 2.4e-07 58.5 75 44.0
Cc09_g05010 Coffea canephora HOM05D003109 ORTHO05D003578 2.4e-07 58.5 72 50.0
Peaxi162Scf00273g01119 Petunia axillaris HOM05D003109 ORTHO05D003578 2.4e-07 58.5 72 52.8
A06p46990 Brassica napus HOM05D003109 ORTHO05D003578 3.1e-07 58.2 79 43.0
Carub.0001s2928 Capsella rubella HOM05D003109 ORTHO05D003578 3.1e-07 58.2 75 42.7
Thhalv10000970m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 3.1e-07 58.2 79 41.8
FAN11G0200 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.1e-07 58.2 81 44.4
Lj6g0023516 Lotus japonicus HOM05D003109 ORTHO05D003578 3.1e-07 58.2 76 46.1
Lalb_Chr20g0114331 Lupinus albus HOM05D003109 ORTHO05D003578 3.1e-07 58.2 71 49.3
Nitab4.5_0011308g0030 Nicotiana tabacum HOM05D003109 ORTHO05D003578 3.1e-07 58.2 72 48.6
Sed0008992 Sechium edule HOM05D003109 ORTHO05D003578 3.1e-07 58.2 76 44.7
Aqoxy4G00011 Aquilegia oxysepala HOM05D003109 ORTHO05D003578 4.0e-07 57.8 77 41.6
DCAR_004346 Daucus carota HOM05D003109 ORTHO05D003578 4.0e-07 57.8 77 42.9
Thhalv10001183m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 4.0e-07 57.8 79 41.8
RcHm_v2.0_Chr4g0419251 Rosa chinensis HOM05D003109 ORTHO05D003578 4.0e-07 57.8 65 50.8
RcHm_v2.0_Chr5g0021271 Rosa chinensis HOM05D003109 ORTHO05D003578 4.0e-07 57.8 81 46.9
Actinidia33648 Actinidia chinensis HOM05D003109 ORTHO05D003578 5.2e-07 57.4 69 47.8
Cpa.g.sc30.95 Carica papaya HOM05D003109 ORTHO05D003578 5.2e-07 57.4 71 45.1
CsaV3_6G053040 Cucumis sativus L. HOM05D003109 ORTHO05D003578 5.2e-07 57.4 76 44.7
RcHm_v2.0_Chr5g0021301 Rosa chinensis HOM05D003109 ORTHO05D003578 5.2e-07 57.4 70 52.9
Atru.chr10.654 Acer truncatum HOM05D003109 ORTHO05D003578 6.8e-07 57.0 77 44.2
Ciclev10016066m.g Citrus clementina HOM05D003109 ORTHO05D003578 6.8e-07 57.0 72 45.8
Manes.03G071100 Manihot esculenta HOM05D003109 ORTHO05D003578 6.8e-07 57.0 76 44.7
Zm00001eb104710 Zea mays HOM05D003109 ORTHO05D003578 6.8e-07 57.0 73 43.8
BcaB07g30928 Brassica carinata HOM05D003109 ORTHO05D003578 8.9e-07 56.6 78 42.3
BcaC04g21819 Brassica carinata HOM05D003109 ORTHO05D003578 8.9e-07 56.6 78 42.3
BolC9t55591H Brassica oleracea HOM05D003109 ORTHO05D003578 8.9e-07 56.6 78 42.3
BraA09t37734Z Brassica rapa HOM05D003109 ORTHO05D003578 8.9e-07 56.6 78 42.3
CARHR030480 Cardamine hirsuta HOM05D003109 ORTHO05D003578 8.9e-07 56.6 74 44.6
Nitab4.5_0000844g0340 Nicotiana tabacum HOM05D003109 ORTHO05D003578 8.9e-07 56.6 72 47.2
PSO675G6279 Papaver somniferum HOM05D003109 ORTHO05D003578 8.9e-07 56.6 82 39.0
RcHm_v2.0_Chr5g0021311 Rosa chinensis HOM05D003109 ORTHO05D003578 8.9e-07 56.6 83 42.2
MSTRG.14821 Avicennia marina HOM05D003109 ORTHO05D003578 1.2e-06 56.2 71 46.5
Ciclev10016075m.g Citrus clementina HOM05D003109 ORTHO05D003578 1.2e-06 56.2 73 47.9
FAN21G3259 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.2e-06 56.2 81 43.2
Os09g0560800 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 1.2e-06 56.2 72 47.2
Hund12397 Selenicereus undatus HOM05D003109 ORTHO05D003578 1.2e-06 56.2 75 46.7
BcaC04g21820 Brassica carinata HOM05D003109 ORTHO05D003578 1.5e-06 55.8 79 40.5
C09p27070 Brassica napus HOM05D003109 ORTHO05D003578 1.5e-06 55.8 79 40.5
BolC9t55590H Brassica oleracea HOM05D003109 ORTHO05D003578 1.5e-06 55.8 79 40.5
CiPaw.10G105800 Carya illinoinensis HOM05D003109 ORTHO05D003578 1.5e-06 55.8 77 46.8
FAN25G0248 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.5e-06 55.8 75 44.0
FAN25G0950 Fragaria x ananassa HOM05D003109 ORTHO05D003578 1.5e-06 55.8 75 44.0
Os09g0560700 Oryza sativa ssp. japonica HOM05D003109 ORTHO05D003578 1.5e-06 55.8 72 47.2
THA.LOC104811863 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 1.5e-06 55.8 79 36.7
BcaC04g20996 Brassica carinata HOM05D003109 ORTHO05D003578 2.0e-06 55.5 72 41.7
BolC9t56516H Brassica oleracea HOM05D003109 ORTHO05D003578 2.0e-06 55.5 72 41.7
BraA09t37733Z Brassica rapa HOM05D003109 ORTHO05D003578 2.0e-06 55.5 79 41.8
Thhalv10011673m.g Eutrema salsugineum HOM05D003109 ORTHO05D003578 2.0e-06 55.5 71 42.3
FvH4_3g13080 Fragaria vesca HOM05D003109 ORTHO05D003578 2.0e-06 55.5 81 43.2
VMungo1309G1953 Vigna mungo HOM05D003109 ORTHO05D003578 2.0e-06 55.5 77 42.9
BcaB07g30929 Brassica carinata HOM05D003109 ORTHO05D003578 2.6e-06 55.1 79 40.5
PSO675G7745 Papaver somniferum HOM05D003109 ORTHO05D003578 2.6e-06 55.1 80 37.5
Phvul.009G243200 Phaseolus vulgaris HOM05D003109 ORTHO05D003578 2.6e-06 55.1 74 45.9
Sp2g09560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 2.6e-06 55.1 79 39.2
SGA_v2.0_scaffold341G49369 Striga asiatica HOM05D003109 ORTHO05D003578 2.6e-06 55.1 77 42.9
THA.LOC104798569 Tarenaya hassleriana HOM05D003109 ORTHO05D003578 2.6e-06 55.1 72 43.1
AL1G45200 Arabidopsis lyrata HOM05D003109 ORTHO05D003578 3.4e-06 54.7 75 41.3
FAN16G3712 Fragaria x ananassa HOM05D003109 ORTHO05D003578 3.4e-06 54.7 81 43.2
HanXRQChr10g0286441 Helianthus annuus HOM05D003109 ORTHO05D003578 3.4e-06 54.7 69 49.3
Zm00001eb104720 Zea mays HOM05D003109 ORTHO05D003578 3.4e-06 54.7 72 47.2
EL10Ac7g17661 Beta vulgaris HOM05D003109 ORTHO05D003578 4.4e-06 54.3 72 43.1
A09p29000 Brassica napus HOM05D003109 ORTHO05D003578 4.4e-06 54.3 72 40.3
C09p36850 Brassica napus HOM05D003109 ORTHO05D003578 4.4e-06 54.3 72 40.3
BraA09t38464Z Brassica rapa HOM05D003109 ORTHO05D003578 4.4e-06 54.3 72 40.3
AUR62008776 Chenopodium quinoa HOM05D003109 ORTHO05D003578 4.4e-06 54.3 70 42.9
Migut.K00496 Erythranthe guttata HOM05D003109 ORTHO05D003578 4.4e-06 54.3 72 47.2
arahy.Tifrunner.gnm1.ann1.D1QZC1 Arachis hypogaea HOM05D003109 ORTHO05D003578 5.8e-06 53.9 76 44.7
Peaxi162Scf00036g01013 Petunia axillaris HOM05D003109 ORTHO05D003578 5.8e-06 53.9 72 47.2
arahy.Tifrunner.gnm1.ann1.4IPC1A Arachis hypogaea HOM05D003109 ORTHO05D003578 7.6e-06 53.5 76 44.7
BcaB01g01432 Brassica carinata HOM05D003109 ORTHO05D003578 7.6e-06 53.5 72 38.9
Glyma.09G050100 Glycine max HOM05D003109 ORTHO05D003578 7.6e-06 53.5 74 45.9
HanXRQChr01g0006281 Helianthus annuus HOM05D003109 ORTHO05D003578 7.6e-06 53.5 72 44.4
Sed0014929 Sechium edule HOM05D003109 ORTHO05D003578 7.6e-06 53.5 77 44.2
Sp6g07560 Schrenkiella parvula HOM05D003109 ORTHO05D003578 9.9e-06 53.1 72 41.7


User provided reference genes

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