Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 5.3e-69 264.2 133 100.0
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 2.6e-68 261.9 133 99.2
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 3.4e-60 235.0 130 87.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.4e-55 217.2 133 78.9
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.6e-52 208.8 131 75.6
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 1.1e-50 203.4 133 72.2
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 3.2e-50 201.8 133 74.4
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.2e-49 199.9 133 71.4
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 2.1e-49 199.1 125 75.2
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 3.6e-49 198.4 156 63.5
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 3.6e-49 198.4 131 71.8
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 6.1e-49 197.6 131 71.8
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 1.4e-48 196.4 131 73.3
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 2.3e-48 195.7 131 70.2
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 5.1e-48 194.5 125 73.6
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 8.8e-48 193.7 131 71.0
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.5e-47 193.0 131 69.5
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.5e-47 193.0 131 71.8
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 2.0e-47 192.6 131 70.2
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 2.0e-47 192.6 131 71.0
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.0e-47 192.6 133 74.4
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.6e-47 192.2 131 71.0
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 3.3e-47 191.8 131 71.0
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 4.4e-47 191.4 127 72.4
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.7e-47 191.0 133 69.9
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 7.4e-47 190.7 131 71.0
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 7.4e-47 190.7 131 70.2
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 7.4e-47 190.7 133 69.9
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 7.4e-47 190.7 131 70.2
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 9.7e-47 190.3 131 69.5
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 1.3e-46 189.9 131 71.0
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 1.3e-46 189.9 131 68.7
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.3e-46 189.9 131 69.5
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 1.7e-46 189.5 134 69.4
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.7e-46 189.5 127 74.0
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.7e-46 189.5 131 68.7
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.2e-46 189.1 131 72.5
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 68.7
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 68.7
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 3.7e-46 188.3 131 67.9
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 4.8e-46 188.0 131 67.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 67.9
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 67.9
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 67.9
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 6.3e-46 187.6 134 68.7
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 68.7
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 6.3e-46 187.6 131 67.9
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 1.1e-45 186.8 131 67.2
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.1e-45 186.8 123 72.4
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.4e-45 186.4 127 68.5
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.4e-45 186.4 131 66.4
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.8e-45 186.0 131 65.6
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 2.4e-45 185.7 131 67.2
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 3.1e-45 185.3 124 70.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.1e-45 185.3 127 65.4
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 5.3e-45 184.5 134 66.4
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 7.0e-45 184.1 131 66.4
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 9.1e-45 183.7 131 64.9
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 9.1e-45 183.7 131 69.5
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 9.1e-45 183.7 123 69.9
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 1.5e-44 183.0 134 65.7
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 1.5e-44 183.0 131 66.4
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 2.0e-44 182.6 127 68.5
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 2.0e-44 182.6 131 67.2
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.6e-44 182.2 95 94.7
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 4.5e-44 181.4 133 69.2
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 4.5e-44 181.4 125 68.8
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 4.5e-44 181.4 131 65.6
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 5.9e-44 181.0 131 66.4
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 7.7e-44 180.6 139 64.7
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.0e-43 180.3 125 68.0
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 1.7e-43 179.5 133 64.7
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 1.7e-43 179.5 133 64.7
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 2.9e-43 178.7 125 68.8
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 1.1e-42 176.8 125 68.8
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 1.4e-42 176.4 127 67.7
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.9e-42 176.0 125 70.4
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.9e-42 176.0 131 66.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 2.5e-42 175.6 127 66.9
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 3.2e-42 175.3 127 65.4
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 3.2e-42 175.3 127 65.4
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 3.2e-42 175.3 127 65.4
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.2e-42 174.9 127 66.1
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 4.2e-42 174.9 127 66.1
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 4.2e-42 174.9 131 64.9
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 5.5e-42 174.5 131 64.1
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.5e-42 174.5 125 64.8
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 5.5e-42 174.5 125 64.8
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 7.2e-42 174.1 127 64.6
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 7.2e-42 174.1 127 66.1
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 9.4e-42 173.7 127 64.6
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 1.6e-41 172.9 127 64.6
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 2.1e-41 172.6 127 64.6
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.1e-41 172.6 127 64.6
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 3.6e-41 171.8 127 63.8
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 1.0e-40 170.2 131 62.6
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.0e-40 170.2 130 63.1
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.4e-40 169.9 127 64.6
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 1.4e-40 169.9 130 62.3
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 2.3e-40 169.1 129 66.7
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 2.3e-40 169.1 133 64.7
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 3.0e-40 168.7 136 61.8
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 3.9e-40 168.3 131 61.8
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 5.2e-40 167.9 136 61.0
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 8.8e-40 167.2 136 61.0
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 8.8e-40 167.2 136 61.0
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 8.8e-40 167.2 137 60.6
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 8.8e-40 167.2 136 61.0
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.1e-39 166.8 131 61.8
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 2.0e-39 166.0 140 59.3
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 5.7e-39 164.5 131 61.8
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 7.4e-39 164.1 132 59.8
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 1.3e-35 153.3 98 73.5
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 2.9e-35 152.1 170 48.2
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 5.2e-32 141.4 72 94.4
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 2.8e-30 135.6 129 51.2
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 4.8e-30 134.8 122 54.1
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.1e-29 133.7 127 55.1
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 2.4e-29 132.5 136 50.7
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 3.1e-29 132.1 93 68.8
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 5.3e-29 131.3 136 51.5
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 8.0e-25 117.5 77 68.8
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.7e-22 109.8 125 44.0
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 4.1e-21 105.1 72 70.8
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 9.1e-21 104.0 71 69.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.0e-20 102.8 75 62.7
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 4.5e-20 101.7 71 66.2
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.3e-19 100.1 76 61.8
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.7e-19 99.8 75 61.3
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 1.7e-19 99.8 71 67.6
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 5.0e-19 98.2 63 73.0
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.5e-18 96.7 60 75.0
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.5e-18 96.7 60 75.0
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 1.5e-18 96.7 76 59.2
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.5e-18 95.9 71 63.4
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 4.2e-18 95.1 68 63.2
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 4.7e-17 91.7 60 70.0
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 4.7e-17 91.7 61 70.5
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 1.6e-12 76.6 116 35.3
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 3.5e-12 75.5 62 58.1
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 3.5e-12 75.5 56 62.5
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.0e-11 73.9 73 50.7
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.7e-11 73.2 74 43.2
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 1.9e-10 69.7 53 60.4
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.3e-10 68.9 53 56.6
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 2.3e-08 62.8 58 53.4
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 6.8e-08 61.2 109 29.4
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 1.5e-07 60.1 58 37.9
PRCOL_00003180 Prasinoderma coloniale HOM05D000737 ORTHO05D000581 4.9e-06 55.1 104 28.8


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