Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g021640.3 Solanum lycopersicum HOM05D005725 ORTHO05D007531 4.7e-296 1020.4 497 100.0
Sopen01g016500 Solanum pennellii HOM05D005725 ORTHO05D007531 8.0e-288 993.0 497 97.6
Peaxi162Scf00378g00520 Petunia axillaris HOM05D005725 ORTHO05D007531 5.1e-218 761.1 498 77.9
Dinv17876 Davidia involucrata HOM05D005725 ORTHO05D007531 1.5e-161 573.5 520 57.9
Nitab4.5_0000253g0020 Nicotiana tabacum HOM05D005725 ORTHO05D007531 4.4e-161 572.0 363 79.6
Nitab4.5_0001484g0010 Nicotiana tabacum HOM05D005725 ORTHO05D007531 2.9e-160 569.3 368 77.2
Nn7g38404 Nelumbo nucifera HOM05D005725 ORTHO05D007531 3.5e-142 509.2 512 52.3
Potri.001G075300 Populus trichocarpa HOM05D005725 ORTHO05D007531 2.8e-139 499.6 517 51.6
GSVIVG01010083001 Vitis vinifera HOM05D005725 ORTHO05D007531 8.1e-139 498.0 508 52.4
RcHm_v2.0_Chr5g0021701 Rosa chinensis HOM05D005725 ORTHO05D007531 3.4e-137 492.7 508 50.2
CiPaw.10G107600 Carya illinoinensis HOM05D005725 ORTHO05D007531 9.9e-137 491.1 535 49.7
Manes.03G071900 Manihot esculenta HOM05D005725 ORTHO05D007531 3.5e-134 482.6 516 50.0
FvH4_3g13240 Fragaria vesca HOM05D005725 ORTHO05D007531 2.6e-129 466.5 510 47.6
CANSAT54G1139 Cannabis sativa HOM05D005725 ORTHO05D007531 5.8e-129 465.3 524 49.4
Prupe.4G119800 Prunus persica HOM05D005725 ORTHO05D007531 7.6e-129 464.9 518 48.1
MSTRG.16376 Avicennia marina HOM05D005725 ORTHO05D007531 1.3e-128 464.2 506 49.6
HanXRQChr09g0257851 Helianthus annuus HOM05D005725 ORTHO05D007531 3.2e-127 459.5 513 47.6
DCAR_001262 Daucus carota HOM05D005725 ORTHO05D007531 2.7e-126 456.4 519 48.6
MD05G1243800 Malus domestica HOM05D005725 ORTHO05D007531 4.6e-126 455.7 517 47.4
TWI38G1126 Tripterygium wilfordii HOM05D005725 ORTHO05D007531 9.6e-124 448.0 498 48.8
ECA232G4493 Erigeron canadensis HOM05D005725 ORTHO05D007531 1.3e-123 447.6 505 48.3
Cfa001153 Carpinus fangiana HOM05D005725 ORTHO05D007531 4.8e-123 445.7 458 51.1
Thecc.02G002000 Theobroma cacao HOM05D005725 ORTHO05D007531 8.2e-123 444.9 516 47.5
Lalb_Chr18g0051971 Lupinus albus HOM05D005725 ORTHO05D007531 1.1e-122 444.5 514 48.4
Psat1g151080 Pisum sativum HOM05D005725 ORTHO05D007531 2.6e-121 439.9 511 48.1
Glyma.15G155900 Glycine max HOM05D005725 ORTHO05D007531 7.6e-121 438.3 513 49.5
Eucgr.D00006 Eucalyptus grandis HOM05D005725 ORTHO05D007531 2.9e-120 436.4 509 46.4
TPR.G30931 Trifolium pratense HOM05D005725 ORTHO05D007531 6.5e-120 435.3 507 47.9
Aqoxy1G01377 Aquilegia oxysepala HOM05D005725 ORTHO05D007531 3.2e-119 433.0 518 46.1
Cc09_g04730 Coffea canephora HOM05D005725 ORTHO05D007531 7.2e-119 431.8 517 46.4
MELO3C007000.2 Cucumis melo HOM05D005725 ORTHO05D007531 4.6e-118 429.1 513 45.0
Lj6g0004794 Lotus japonicus HOM05D005725 ORTHO05D007531 4.6e-118 429.1 518 47.9
Medtr2g437810 Medicago truncatula HOM05D005725 ORTHO05D007531 4.6e-118 429.1 513 47.4
Glyma.09G048600 Glycine max HOM05D005725 ORTHO05D007531 1.8e-117 427.2 517 49.3
FAN11G2553 Fragaria x ananassa HOM05D005725 ORTHO05D007531 2.3e-117 426.8 504 45.6
Phvul.009G244300 Phaseolus vulgaris HOM05D005725 ORTHO05D007531 3.0e-117 426.4 508 48.2
FAN21G2681 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.5e-116 424.1 474 47.5
COL.COLO4_25036 Corchorus olitorius HOM05D005725 ORTHO05D007531 5.7e-116 422.2 516 45.7
Duzib132G0485 Durio zibethinus HOM05D005725 ORTHO05D007531 6.3e-115 418.7 515 45.4
VMungo1309G0521 Vigna mungo HOM05D005725 ORTHO05D007531 3.1e-114 416.4 512 46.9
Sabra01G0053700 Salix brachista HOM05D005725 ORTHO05D007531 4.1e-114 416.0 657 40.5
Gohir.D11G050800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 1.0e-112 411.4 514 46.7
Gorai.007G055200 Gossypium raimondii HOM05D005725 ORTHO05D007531 1.0e-112 411.4 514 46.7
FAN16G0048 Fragaria x ananassa HOM05D005725 ORTHO05D007531 1.3e-112 411.0 466 47.0
Atru.chr10.248 Acer truncatum HOM05D005725 ORTHO05D007531 8.5e-112 408.3 512 45.5
arahy.Tifrunner.gnm1.ann1.2M6VYA Arachis hypogaea HOM05D005725 ORTHO05D007531 8.5e-112 408.3 522 45.6
Gohir.A11G047200 Gossypium hirsutum HOM05D005725 ORTHO05D007531 3.2e-111 406.4 514 46.3
Migut.M02028 Erythranthe guttata HOM05D005725 ORTHO05D007531 1.4e-109 401.0 501 45.3
PGR004G2791 Punica granatum HOM05D005725 ORTHO05D007531 2.2e-107 393.7 514 44.9
PSO541G5061 Papaver somniferum HOM05D005725 ORTHO05D007531 8.2e-107 391.7 462 48.1
ClCG01G025890 Citrullus lanatus HOM05D005725 ORTHO05D007531 1.1e-106 391.3 487 44.6
Ca_02400_v3 Cicer arietinum L. HOM05D005725 ORTHO05D007531 5.0e-104 382.5 514 45.7
vmacro03566 Vaccinium macrocarpon HOM05D005725 ORTHO05D007531 1.1e-103 381.3 661 38.6
SalBow8G4963 Salvia bowleyana HOM05D005725 ORTHO05D007531 3.2e-103 379.8 505 43.4
Ah.03g147910 Amaranthus hybridus HOM05D005725 ORTHO05D007531 9.4e-103 378.3 510 42.2
AUR62003571 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.6e-102 376.3 502 43.8
FAN25G0714 Fragaria x ananassa HOM05D005725 ORTHO05D007531 6.1e-102 375.6 462 45.7
CsaV3_6G053120 Cucumis sativus L. HOM05D005725 ORTHO05D007531 4.4e-100 369.4 441 44.2
Lsat_1_v5_gn_8_107401 Lactuca sativa HOM05D005725 ORTHO05D007531 2.4e-98 363.6 402 47.0
Carub.0006s1558 Capsella rubella HOM05D005725 ORTHO05D007531 2.5e-95 353.6 503 41.4
AL6G28440 Arabidopsis lyrata HOM05D005725 ORTHO05D007531 3.2e-95 353.2 499 41.5
QL11p011022 Quercus lobata HOM05D005725 ORTHO05D007531 9.4e-95 351.7 880 29.8
TAR626G0027 Trochodendron aralioides HOM05D005725 ORTHO05D007531 3.6e-94 349.7 362 51.9
BcaC03g18554 Brassica carinata HOM05D005725 ORTHO05D007531 8.0e-94 348.6 514 41.8
A02p04160 Brassica napus HOM05D005725 ORTHO05D007531 1.0e-93 348.2 526 40.7
BraA02t05379Z Brassica rapa HOM05D005725 ORTHO05D007531 2.3e-93 347.1 513 41.3
C02p09010 Brassica napus HOM05D005725 ORTHO05D007531 6.7e-93 345.5 519 41.2
Thhalv10015915m.g Eutrema salsugineum HOM05D005725 ORTHO05D007531 6.7e-93 345.5 508 41.1
BolC2t06810H Brassica oleracea HOM05D005725 ORTHO05D007531 1.2e-92 344.7 520 41.2
arahy.Tifrunner.gnm1.ann1.GBFD5K Arachis hypogaea HOM05D005725 ORTHO05D007531 5.7e-92 342.4 447 45.2
Hund26771 Selenicereus undatus HOM05D005725 ORTHO05D007531 8.2e-91 338.6 469 41.6
AT5G17370 Arabidopsis thaliana HOM05D005725 ORTHO05D007531 2.4e-90 337.0 476 41.2
Sp6g26850 Schrenkiella parvula HOM05D005725 ORTHO05D007531 4.1e-90 336.3 509 40.7
ATR0794G001 Amborella trichopoda HOM05D005725 ORTHO05D007531 2.0e-89 334.0 517 40.0
BcaB05g23263 Brassica carinata HOM05D005725 ORTHO05D007531 2.5e-87 327.0 513 41.3
Os07g0108000 Oryza sativa ssp. japonica HOM05D005725 ORTHO05D007531 7.2e-87 325.5 515 38.8
Zm00001eb298410 Zea mays HOM05D005725 ORTHO05D007531 9.4e-87 325.1 510 39.2
CARHR195840 Cardamine hirsuta HOM05D005725 ORTHO05D007531 1.6e-86 324.3 510 39.8
Aa31LG11G12260 Aethionema arabicum HOM05D005725 ORTHO05D007531 3.6e-86 323.2 514 38.1
Sed0022851 Sechium edule HOM05D005725 ORTHO05D007531 8.0e-86 322.0 402 42.5
arahy.Tifrunner.gnm1.ann1.G9C5AI Arachis hypogaea HOM05D005725 ORTHO05D007531 1.8e-85 320.9 447 43.8
AUR62017886 Chenopodium quinoa HOM05D005725 ORTHO05D007531 3.7e-83 313.2 504 40.1
HPP92_000831 Vanilla planifolia HOM05D005725 ORTHO05D007531 2.4e-82 310.5 536 35.8
Ciclev10015389m.g Citrus clementina HOM05D005725 ORTHO05D007531 4.5e-81 306.2 404 43.6
CSS0030006 Camellia sinensis var. sinensis HOM05D005725 ORTHO05D007531 2.2e-75 287.3 509 40.1
DCAR_004356 Daucus carota HOM05D005725 ORTHO05D007531 7.3e-71 272.3 449 38.5
Duzib052G0524 Durio zibethinus HOM05D005725 ORTHO05D007531 1.5e-63 248.1 317 43.8
SHI12770 Sapria himalayana HOM05D005725 ORTHO05D000023 2.3e-61 240.7 339 41.6
RcHm_v2.0_Chr5g0021601 Rosa chinensis HOM05D005725 ORTHO05D007531 8.3e-59 232.3 285 43.5
Haze_05198 Corylus avellana HOM05D005725 ORTHO05D007531 5.0e-56 223.0 273 48.0
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.6e-54 216.9 267 47.2
Pp3c6_29180 Physcomitrium patens HOM05D005725 ORTHO05D007531 2.3e-53 214.2 539 30.1
Atru.chr2.2825 Acer truncatum HOM05D005725 ORTHO05D007531 1.9e-50 204.5 335 38.8
Sc05g0005240 Simmondsia chinensis HOM05D005725 ORTHO05D007531 2.7e-49 200.7 299 39.5
DCAR_004355 Daucus carota HOM05D005725 ORTHO05D007531 3.0e-48 197.2 451 31.5
Haze_05199 Corylus avellana HOM05D005725 ORTHO05D007531 5.8e-44 183.0 261 41.8
CDE06G0984 Ceratophyllum demersum HOM05D005725 ORTHO05D007531 4.9e-43 179.9 281 40.6
Mapoly0033s0026 Marchantia polymorpha HOM05D005725 ORTHO05D007531 1.6e-41 174.9 540 28.5
SGA_v2.0_scaffold423G51459 Striga asiatica HOM05D005725 ORTHO05D007531 4.0e-37 160.2 207 43.5
ECA232G1808 Erigeron canadensis HOM05D005725 ORTHO05D007531 2.0e-36 157.9 312 35.6
Potri.003G155900 Populus trichocarpa HOM05D005725 ORTHO05D007531 1.9e-34 151.4 146 53.4
Oeu013488.1 Olea europaea HOM05D005725 ORTHO05D007531 7.1e-34 149.4 169 44.4
AagrBONN_evm.TU.Sc2ySwM_368.2823 Anthoceros agrestis HOM05D005725 ORTHO05D007531 1.9e-31 141.4 462 27.7
TAR626G0843 Trochodendron aralioides HOM05D005725 ORTHO05D007531 6.4e-27 126.3 133 52.6
RcHm_v2.0_Chr5g0021611 Rosa chinensis HOM05D005725 ORTHO05D007531 2.4e-26 124.4 171 42.7
EL10Ac6g15292 Beta vulgaris HOM05D005725 ORTHO05D007531 7.1e-26 122.9 137 49.6
CBR_g22873 Chara braunii HOM05D005725 ORTHO05D007531 1.2e-25 122.1 576 23.1
Ciclev10017729m.g Citrus clementina HOM05D005725 ORTHO05D007531 1.6e-25 121.7 117 54.7
Oeu005615.1 Olea europaea HOM05D000039 ORTHO05D005263 1.0e-24 119.0 102 58.8
SMO230G0054 Selaginella moellendorffii HOM05D005725 ORTHO05D007531 7.4e-23 112.8 257 31.5
unitig_746.g26585 Utricularia gibba HOM05D005725 ORTHO05D007531 1.8e-21 108.2 132 48.5
SEGI_40606 Sequoiadendron giganteum HOM05D005725 ORTHO05D007531 1.6e-17 95.1 131 42.0
A03p08350 Brassica napus HOM05D005725 ORTHO05D007531 3.9e-16 90.5 251 31.1
BcaC05g29074 Brassica carinata HOM05D005725 ORTHO05D007531 2.8e-14 84.3 140 39.3
BolC5t33962H Brassica oleracea HOM05D005725 ORTHO05D007531 4.0e-13 80.5 129 40.3
Dinv31193 Davidia involucrata HOM05D005725 ORTHO05D020553 2.0e-12 78.2 92 55.4
C09p34670 Brassica napus HOM05D005725 ORTHO05D007531 4.2e-10 70.5 141 36.9
BolC9t56313H Brassica oleracea HOM05D005725 ORTHO05D007531 4.2e-10 70.5 141 36.9
Glyma.06G212700 Glycine max HOM05D005725 ORTHO05D007531 7.1e-10 69.7 69 55.1
BcaC04g22388 Brassica carinata HOM05D005725 ORTHO05D007531 2.3e-08 64.7 114 39.5
C09p19870 Brassica napus HOM05D005725 ORTHO05D007531 2.3e-08 64.7 114 39.5
BolC9t54892H Brassica oleracea HOM05D005725 ORTHO05D007531 2.3e-08 64.7 114 39.5
Atru.chr3.3228 Acer truncatum HOM05D000154 ORTHO05D000092 1.1e-07 62.4 61 47.5
C05p52870 Brassica napus HOM05D005725 ORTHO05D007531 1.6e-06 58.5 129 28.7
CiPaw.09G139700 Carya illinoinensis HOM05D005725 ORTHO05D007531 4.8e-06 57.0 140 31.4
Gohir.A08G150800 Gossypium hirsutum HOM05D005725 ORTHO05D007531 8.2e-06 56.2 150 28.0


User provided reference genes

Program Settings