Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020470.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 5.8e-61 237.3 111 100.0
CAN.G223.15 Capsicum annuum HOM05D001560 ORTHO05D004675 8.4e-44 180.3 143 65.7
DCAR_032439 Daucus carota HOM05D001560 ORTHO05D004675 2.4e-43 178.7 143 65.7
ATMG00070 Arabidopsis thaliana HOM05D001560 ORTHO05D004675 4.2e-43 177.9 143 65.0
Gohir.A01G022400 Gossypium hirsutum HOM05D001560 ORTHO05D004675 4.2e-43 177.9 143 64.3
BcaC09g49590 Brassica carinata HOM05D001560 ORTHO05D004675 9.3e-43 176.8 143 64.3
CANSAT16G0009 Cannabis sativa HOM05D001560 ORTHO05D004675 9.3e-43 176.8 143 65.0
LjContig00439g0006307 Lotus japonicus HOM05D001560 ORTHO05D004675 2.7e-42 175.3 143 64.3
LjContig00446g0014136 Lotus japonicus HOM05D001560 ORTHO05D004675 2.7e-42 175.3 143 64.3
BolSC28t60362H Brassica oleracea HOM05D001560 ORTHO05D004675 3.5e-42 174.9 143 64.3
BraSC48t46349Z Brassica rapa HOM05D001560 ORTHO05D004675 3.5e-42 174.9 143 64.3
CARHR282620 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.5e-42 174.9 143 64.3
Sp3g25870 Schrenkiella parvula HOM05D001560 ORTHO05D004675 3.5e-42 174.9 143 64.3
Lj2P1224T99 Lonicera japonica HOM05D001560 ORTHO05D004675 6.0e-42 174.1 143 64.3
RcHm_v2.0_Chr6g0257991 Rosa chinensis HOM05D001560 ORTHO05D004675 6.0e-42 174.1 143 65.0
RcHm_v2.0_MTg0498881 Rosa chinensis HOM05D001560 ORTHO05D004675 6.0e-42 174.1 143 65.0
Ah.10g027950 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.8e-42 173.7 143 63.6
Ah.10g028660 Amaranthus hybridus HOM05D001560 ORTHO05D004675 7.8e-42 173.7 143 63.6
Sed0020323 Sechium edule HOM05D001560 ORTHO05D004675 7.8e-42 173.7 143 63.6
Thhalv10022839m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 1.0e-41 173.3 143 63.6
Ah.02g118870 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.7e-41 172.6 143 62.9
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 1.7e-41 172.6 143 62.9
Migut.D01524 Erythranthe guttata HOM05D001560 ORTHO05D004675 3.0e-41 171.8 143 63.6
Hma1.2p1_1099F.1_g256790 Hydrangea macrophylla HOM05D001560 ORTHO05D004675 5.1e-41 171.0 143 63.6
HanXRQChr00c0055g0571471 Helianthus annuus HOM05D001560 ORTHO05D004675 1.1e-40 169.9 143 63.6
HanXRQMTg0579651 Helianthus annuus HOM05D001560 ORTHO05D004675 1.1e-40 169.9 143 63.6
Lalb_Chr00c39g0409121 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-40 169.9 143 62.9
Lalb_Chr00c39g0409261 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-40 169.9 143 62.9
Lalb_Chr00c51g0413181 Lupinus albus HOM05D001560 ORTHO05D004675 1.1e-40 169.9 143 62.9
Ah.08g210720 Amaranthus hybridus HOM05D001560 ORTHO05D004675 1.5e-40 169.5 143 62.2
Solyc00g019950.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 2.5e-40 168.7 136 65.4
Potri.013G066660 Populus trichocarpa HOM05D001560 ORTHO05D004675 4.3e-40 167.9 143 61.5
HanXRQChr02g0035261 Helianthus annuus HOM05D001560 ORTHO05D004675 2.8e-39 165.2 143 61.5
SHI46062 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-39 164.9 143 59.4
unitig_87.g28016 Utricularia gibba HOM05D001560 ORTHO05D004675 3.6e-39 164.9 143 62.2
SHI40934 Sapria himalayana HOM05D001560 ORTHO05D004675 6.2e-39 164.1 143 58.7
SHI51556 Sapria himalayana HOM05D001560 ORTHO05D004675 8.1e-39 163.7 145 58.6
BolSC28t60305H Brassica oleracea HOM05D001560 ORTHO05D004675 1.5e-37 159.5 122 68.9
SHI37164 Sapria himalayana HOM05D001560 ORTHO05D003613 2.0e-37 159.1 143 57.3
Gorai.001G166700 Gossypium raimondii HOM05D007877 ORTHO05D009957 3.4e-37 158.3 138 60.1
Nn1g10115 Nelumbo nucifera HOM05D001560 ORTHO05D004675 1.7e-36 156.0 143 60.1
Lalb_Chr00c21g0406161 Lupinus albus HOM05D001560 ORTHO05D004675 2.9e-36 155.2 114 67.5
Nitab4.5_0001152g0360 Nicotiana tabacum HOM05D001560 ORTHO05D004675 6.4e-36 154.1 115 67.0
Zm00001eb382940 Zea mays HOM05D001560 ORTHO05D004675 2.4e-35 152.1 143 58.7
SHI47572 Sapria himalayana HOM05D001560 ORTHO05D004675 4.2e-35 151.4 116 64.7
Medtr0212s0080 Medicago truncatula HOM05D001560 ORTHO05D004675 7.1e-35 150.6 143 55.9
Psat7g198960 Pisum sativum HOM05D001560 ORTHO05D004675 7.1e-35 150.6 143 55.9
CDE02G0735 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.6e-34 149.4 143 58.7
SHI39080 Sapria himalayana HOM05D001560 ORTHO05D004675 2.8e-31 138.7 143 52.4
arahy.Tifrunner.gnm1.ann1.HAH5KR Arachis hypogaea HOM05D001560 ORTHO05D004675 9.0e-30 133.7 122 59.8
BcaC09g49591 Brassica carinata HOM05D001560 ORTHO05D004675 9.0e-30 133.7 122 59.8
DCAR_031657 Daucus carota HOM05D001560 ORTHO05D004675 2.6e-29 132.1 122 59.8
DCAR_032222 Daucus carota HOM05D001560 ORTHO05D004675 2.6e-29 132.1 122 59.8
SalBow1G1852 Salvia bowleyana HOM05D001560 ORTHO05D004675 3.4e-29 131.7 122 59.8
SGA_v2.0_scaffold245G44645 Striga asiatica HOM05D001560 ORTHO05D004675 3.4e-29 131.7 122 58.2
Aa31csc239G40 Aethionema arabicum HOM05D001560 ORTHO05D004675 4.5e-29 131.3 122 59.0
Dinv06677 Davidia involucrata HOM05D001560 ORTHO05D004675 2.2e-28 129.0 122 59.0
Lj2P1227T100 Lonicera japonica HOM05D001560 ORTHO05D004675 2.2e-28 129.0 122 59.0
Thhalv10002997m.g Eutrema salsugineum HOM05D001560 ORTHO05D004675 2.9e-28 128.6 122 58.2
Peaxi162Scf01588g00002 Petunia axillaris HOM05D001560 ORTHO05D004675 4.9e-28 127.9 100 67.0
SHI36380 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-27 126.7 129 53.5
SabraMtG0007900 Salix brachista HOM05D001560 ORTHO05D004675 1.9e-27 125.9 122 56.6
SHI35320 Sapria himalayana HOM05D001560 ORTHO05D004675 5.5e-27 124.4 129 52.7
HanXRQChr12g0358671 Helianthus annuus HOM05D001560 ORTHO05D004675 1.2e-26 123.2 122 57.4
Solyc08g029250.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 1.2e-26 123.2 79 73.4
ECA039G0015 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.1e-26 122.5 122 57.4
ECA039G0026 Erigeron canadensis HOM05D001560 ORTHO05D004675 2.1e-26 122.5 122 57.4
SHI50434 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-26 122.1 118 56.8
SHI52730 Sapria himalayana HOM05D001560 ORTHO05D004675 6.0e-26 120.9 123 53.7
BraSC177t45760Z Brassica rapa HOM05D001560 ORTHO05D004675 7.9e-26 120.6 114 57.9
SHI33931 Sapria himalayana HOM05D001560 ORTHO05D004675 7.9e-26 120.6 119 55.5
SHI51143 Sapria himalayana HOM05D001560 ORTHO05D004675 1.0e-25 120.2 122 54.1
MBI05_g23323_MAGBIO Magnolia biondii HOM05D001560 ORTHO05D004675 1.8e-25 119.4 122 55.7
SHI35188 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-25 119.4 122 53.3
Lsat_1_v5_gn_1_23980 Lactuca sativa HOM05D001560 ORTHO05D004675 3.0e-25 118.6 122 56.6
SHI42286 Sapria himalayana HOM05D000743 ORTHO05D004675 3.9e-25 118.2 119 54.6
SHI37161 Sapria himalayana HOM05D000743 ORTHO05D000580 8.7e-25 117.1 132 50.0
Cpa.g.sc38.8 Carica papaya HOM05D001560 ORTHO05D004675 1.1e-24 116.7 119 54.6
SHI37162 Sapria himalayana HOM05D001560 ORTHO05D004675 1.9e-24 115.9 121 52.9
SHI48979 Sapria himalayana HOM05D001560 ORTHO05D004675 2.1e-23 112.5 134 49.3
Sc13g0007750 Simmondsia chinensis HOM05D001560 ORTHO05D004675 2.0e-21 105.9 103 55.3
Manes.01G049510 Manihot esculenta HOM05D001560 ORTHO05D004675 1.0e-20 103.6 59 81.4
C01p34850 Brassica napus HOM05D001560 ORTHO05D004675 2.2e-20 102.4 57 84.2
Solyc08g065620.1 Solanum lycopersicum HOM05D001560 ORTHO05D004675 3.8e-20 101.7 102 56.9
SHI36583 Sapria himalayana HOM05D001560 ORTHO05D004675 8.4e-20 100.5 108 52.8
BolC1t03442H Brassica oleracea HOM05D001560 ORTHO05D004675 2.5e-19 99.0 119 47.9
CsaV3_5G015950 Cucumis sativus L. HOM05D001560 ORTHO05D004675 2.5e-19 99.0 60 76.7
SHI54988 Sapria himalayana HOM05D001560 ORTHO05D004675 7.1e-19 97.4 59 74.6
SHI35332 Sapria himalayana HOM05D001560 ORTHO05D004675 2.7e-18 95.5 106 50.9
SHI36971 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-18 95.1 60 73.3
SHI43258 Sapria himalayana HOM05D001560 ORTHO05D004675 3.5e-18 95.1 60 73.3
Actinidia34872 Actinidia chinensis HOM05D001560 ORTHO05D004675 6.0e-18 94.4 75 65.3
C01p34750 Brassica napus HOM05D001560 ORTHO05D004675 7.9e-18 94.0 119 47.1
arahy.Tifrunner.gnm1.ann1.11DKXG Arachis hypogaea HOM05D001560 ORTHO05D004675 1.0e-17 93.6 50 86.0
arahy.Tifrunner.gnm1.ann1.E4X7TI Arachis hypogaea HOM05D001560 ORTHO05D004675 1.0e-17 93.6 50 86.0
Ca_22175_v3 Cicer arietinum L. HOM05D001560 ORTHO05D004675 1.0e-17 93.6 50 86.0
Sopen00g002540 Solanum pennellii HOM05D001560 ORTHO05D004675 1.0e-17 93.6 50 86.0
RhsimMtG0004600 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.8e-17 92.8 60 73.3
RhsimMtG0006100 Rhododendron simsii HOM05D001560 ORTHO05D004675 1.8e-17 92.8 60 73.3
SHI49196 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-17 92.8 60 73.3
SHI54579 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-17 92.8 60 73.3
CARHR287160 Cardamine hirsuta HOM05D001560 ORTHO05D004675 3.0e-17 92.0 54 81.5
BraSC48t46227Z Brassica rapa HOM05D001560 ORTHO05D004675 6.7e-17 90.9 108 49.1
Dinv29327 Davidia involucrata HOM05D001560 ORTHO05D004675 6.7e-17 90.9 50 84.0
SHI37085 Sapria himalayana HOM05D001560 ORTHO05D004675 6.7e-17 90.9 60 71.7
ECA238G3729 Erigeron canadensis HOM05D001560 ORTHO05D004675 8.7e-17 90.5 75 62.7
Os12g0422971 Oryza sativa ssp. japonica HOM05D001560 ORTHO05D004675 1.9e-16 89.4 60 71.7
PGSC0003DMG400018984 Solanum tuberosum HOM05D001560 ORTHO05D004675 1.9e-16 89.4 50 82.0
BraSC48t46315Z Brassica rapa HOM05D001560 ORTHO05D004675 2.5e-16 89.0 51 82.4
ECA041G0003 Erigeron canadensis HOM05D001560 ORTHO05D004675 3.3e-16 88.6 50 82.0
Nitab4.5_0001152g0390 Nicotiana tabacum HOM05D001560 ORTHO05D004675 5.7e-16 87.8 108 50.9
SHI53856 Sapria himalayana HOM05D001560 ORTHO05D004675 5.7e-16 87.8 60 70.0
SHI35231 Sapria himalayana HOM05D001560 ORTHO05D004675 1.3e-15 86.7 60 70.0
SHI42241 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-15 85.9 69 60.9
SHI53284 Sapria himalayana HOM05D001560 ORTHO05D004675 2.2e-15 85.9 81 58.0
SHI26652 Sapria himalayana HOM05D001560 ORTHO05D004675 3.7e-15 85.1 50 80.0
Solyc03g061560.3 Solanum lycopersicum HOM05D001560 ORTHO05D004675 8.2e-15 84.0 102 49.0
SHI45393 Sapria himalayana HOM05D001560 ORTHO05D004675 1.1e-14 83.6 50 78.0
CDE02G2746 Ceratophyllum demersum HOM05D001560 ORTHO05D004675 1.4e-14 83.2 50 78.0
SHI36016 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-14 82.8 81 55.6
TPR.G20383 Trifolium pratense HOM05D001560 ORTHO05D004675 1.5e-13 79.7 59 62.7
Manes.01G049495 Manihot esculenta HOM05D001560 ORTHO05D004675 6.5e-12 74.3 41 80.5
TPR.G15690 Trifolium pratense HOM05D001560 ORTHO05D004675 2.5e-11 72.4 46 71.7
TPR.G40193 Trifolium pratense HOM05D001560 ORTHO05D004675 3.2e-11 72.0 34 91.2
SHI36775 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-10 68.6 33 87.9
SHI36786 Sapria himalayana HOM05D001560 ORTHO05D004675 3.6e-10 68.6 33 87.9
HanXRQChr10g0297171 Helianthus annuus HOM05D001560 ORTHO05D004675 1.9e-08 62.8 106 40.6
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 2.5e-08 62.4 59 49.2
SHI39097 Sapria himalayana HOM05D001560 ORTHO05D004675 2.5e-08 62.4 38 73.7
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 1.3e-07 60.1 58 50.0
DCAR_022732 Daucus carota HOM05D001560 ORTHO05D004675 4.8e-07 58.2 28 89.3
SHI36139 Sapria himalayana HOM05D001560 ORTHO05D004675 4.8e-07 58.2 31 83.9
Nitab4.5_0003709g0080 Nicotiana tabacum HOM05D012582 ORTHO05D011721 1.4e-06 56.6 30 83.3
SHI37068 Sapria himalayana HOM05D001560 ORTHO05D004675 1.8e-06 56.2 47 59.6
PGSC0003DMG400020882 Solanum tuberosum HOM05D001560 ORTHO05D004675 5.3e-06 54.7 41 65.9
Medtr8g059730 Medicago truncatula HOM05D001560 ORTHO05D004675 6.9e-06 54.3 42 54.8


User provided reference genes

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