Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020120.3 Solanum lycopersicum HOM05D000361 ORTHO05D020223 3.4e-36 154.5 76 100.0
Solyc02g082180.3 Solanum lycopersicum HOM05D000361 ORTHO05D008294 2.5e-15 85.1 47 89.4
Sopen02g026840 Solanum pennellii HOM05D000361 ORTHO05D008294 2.5e-15 85.1 47 89.4
PGSC0003DMG400013633 Solanum tuberosum HOM05D000361 ORTHO05D008294 2.5e-15 85.1 47 89.4
CAN.G809.9 Capsicum annuum HOM05D000361 ORTHO05D008294 5.6e-15 84.0 47 87.2
Peaxi162Scf00036g00321 Petunia axillaris HOM05D000361 ORTHO05D008294 9.5e-15 83.2 47 87.2
Sopen00g004580 Solanum pennellii HOM05D000361 ORTHO05D020223 1.2e-14 82.8 47 87.2
Sopen00g004590 Solanum pennellii HOM05D000361 ORTHO05D020223 1.2e-14 82.8 47 87.2
Nitab4.5_0001815g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008294 2.1e-14 82.0 47 87.2
Nitab4.5_0007687g0010 Nicotiana tabacum HOM05D000361 ORTHO05D008294 2.1e-14 82.0 47 87.2
Lsat_1_v5_gn_9_100181 Lactuca sativa HOM05D000361 ORTHO05D008294 3.6e-14 81.3 47 85.1
vmacro03573 Vaccinium macrocarpon HOM05D000361 ORTHO05D008294 1.8e-13 79.0 47 80.9
Cc09_g04600 Coffea canephora HOM05D000361 ORTHO05D008294 3.1e-13 78.2 47 78.7
Dinv07937 Davidia involucrata HOM05D000361 ORTHO05D008294 4.0e-13 77.8 47 78.7
Dinv18416 Davidia involucrata HOM05D000361 ORTHO05D008294 4.0e-13 77.8 47 78.7
CSS0044464 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008294 5.2e-13 77.4 47 78.7
Rhsim13G0136200 Rhododendron simsii HOM05D000361 ORTHO05D008294 1.2e-12 76.3 47 80.9
HanXRQChr07g0187741 Helianthus annuus HOM05D000361 ORTHO05D008294 2.0e-12 75.5 47 80.9
Sc24g0002810 Simmondsia chinensis HOM05D000361 ORTHO05D008294 2.9e-11 71.6 47 74.5
Nn1g09868 Nelumbo nucifera HOM05D000361 ORTHO05D008294 3.8e-11 71.2 47 72.3
TAR627G0013 Trochodendron aralioides HOM05D000361 ORTHO05D008294 3.8e-11 71.2 47 74.5
Lj1C1152G4 Lonicera japonica HOM05D000361 ORTHO05D008294 4.9e-11 70.9 47 72.3
Cpa.g.sc30.68 Carica papaya HOM05D000361 ORTHO05D008294 8.4e-11 70.1 55 65.5
Oeu039911.1 Olea europaea HOM05D000361 ORTHO05D008294 2.4e-10 68.6 55 63.6
GSVIVG01003253001 Vitis vinifera HOM05D000361 ORTHO05D008294 2.4e-10 68.6 53 73.6
Aa31LG9G8530 Aethionema arabicum HOM05D000361 ORTHO05D008294 3.2e-10 68.2 55 63.6
Hund20134 Selenicereus undatus HOM05D000361 ORTHO05D008294 4.1e-10 67.8 47 70.2
Lsat_1_v5_gn_9_38040 Lactuca sativa HOM05D000361 ORTHO05D020223 5.4e-10 67.4 65 60.0
Ciclev10014269m.g Citrus clementina HOM05D000361 ORTHO05D008294 7.1e-10 67.0 62 64.5
PSO541G2719 Papaver somniferum HOM05D000361 ORTHO05D008294 7.1e-10 67.0 53 64.2
PSO675G8445 Papaver somniferum HOM05D000361 ORTHO05D008294 7.1e-10 67.0 53 64.2
HPP92_000506 Vanilla planifolia HOM05D000361 ORTHO05D008294 9.2e-10 66.6 47 63.8
Migut.H01418 Erythranthe guttata HOM05D000361 ORTHO05D008294 1.6e-09 65.9 50 66.0
QL11p010760 Quercus lobata HOM05D000361 ORTHO05D008294 1.6e-09 65.9 47 66.0
CsaV3_6G053180 Cucumis sativus L. HOM05D000361 ORTHO05D008294 2.1e-09 65.5 55 58.2
Sed0009371 Sechium edule HOM05D000361 ORTHO05D008294 2.1e-09 65.5 55 61.8
MSTRG.13294 Avicennia marina HOM05D000361 ORTHO05D008294 2.7e-09 65.1 50 66.0
ClCG01G025960 Citrullus lanatus HOM05D000361 ORTHO05D008294 2.7e-09 65.1 55 60.0
Potri.001G074000 Populus trichocarpa HOM05D000361 ORTHO05D008294 2.7e-09 65.1 50 64.0
Duzib132G1205 Durio zibethinus HOM05D000361 ORTHO05D008294 4.6e-09 64.3 55 61.8
Atru.chr10.231 Acer truncatum HOM05D000361 ORTHO05D008294 6.0e-09 63.9 53 66.0
Manes.16G060200 Manihot esculenta HOM05D000361 ORTHO05D008294 6.0e-09 63.9 48 68.8
Prupe.4G121000 Prunus persica HOM05D000361 ORTHO05D008294 6.0e-09 63.9 47 63.8
SGA_v2.0_scaffold341G49368 Striga asiatica HOM05D000361 ORTHO05D008294 6.0e-09 63.9 54 59.3
Sabra01G0052300 Salix brachista HOM05D000361 ORTHO05D008294 7.8e-09 63.5 50 64.0
AL8G14990 Arabidopsis lyrata HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
AT5G44635 Arabidopsis thaliana HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
BcaC06g31601 Brassica carinata HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
A06p47040 Brassica napus HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
BraA06t27577Z Brassica rapa HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
Carub.0008s0363 Capsella rubella HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
Thhalv10000779m.g Eutrema salsugineum HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
Sp2g09450 Schrenkiella parvula HOM05D000361 ORTHO05D008294 1.0e-08 63.2 55 60.0
ECA240G0581 Erigeron canadensis HOM05D000361 ORTHO05D008294 1.3e-08 62.8 47 66.0
Gohir.D02G240100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 1.3e-08 62.8 55 58.2
Gorai.005G268500 Gossypium raimondii HOM05D000361 ORTHO05D008294 1.3e-08 62.8 55 58.2
unitig_37.g13054 Utricularia gibba HOM05D000361 ORTHO05D008294 1.3e-08 62.8 47 63.8
Thecc.02G000800 Theobroma cacao HOM05D000361 ORTHO05D008294 1.7e-08 62.4 55 58.2
CARHR178260 Cardamine hirsuta HOM05D000361 ORTHO05D008294 2.3e-08 62.0 55 58.2
Gohir.A03G218100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 2.3e-08 62.0 47 63.8
THA.LOC104811945 Tarenaya hassleriana HOM05D000361 ORTHO05D008294 2.3e-08 62.0 67 53.7
TWI63G1117 Tripterygium wilfordii HOM05D000361 ORTHO05D008294 2.3e-08 62.0 54 61.1
Zm00001eb284360 Zea mays HOM05D000361 ORTHO05D008294 2.3e-08 62.0 47 61.7
Aqoxy1G01354 Aquilegia oxysepala HOM05D000361 ORTHO05D008294 3.0e-08 61.6 47 61.7
CiPaw.09G140700 Carya illinoinensis HOM05D000361 ORTHO05D008294 3.0e-08 61.6 47 66.0
Glyma.15G154900 Glycine max HOM05D000361 ORTHO05D008294 3.0e-08 61.6 55 56.4
Cfa001165 Carpinus fangiana HOM05D000361 ORTHO05D008294 3.9e-08 61.2 47 66.0
Haze_05186 Corylus avellana HOM05D000361 ORTHO05D008294 3.9e-08 61.2 47 66.0
Glyma.09G047300 Glycine max HOM05D000361 ORTHO05D008294 3.9e-08 61.2 55 52.7
BcaC06g34528 Brassica carinata HOM05D000361 ORTHO05D008294 6.6e-08 60.5 55 58.2
C07p27530 Brassica napus HOM05D000361 ORTHO05D008294 6.6e-08 60.5 55 58.2
BolC7t43284H Brassica oleracea HOM05D000361 ORTHO05D008294 6.6e-08 60.5 55 58.2
Lj6g0011881 Lotus japonicus HOM05D000361 ORTHO05D008294 6.6e-08 60.5 62 58.1
MD10G1224200 Malus domestica HOM05D000361 ORTHO05D008294 8.7e-08 60.1 47 59.6
COL.COLO4_25023 Corchorus olitorius HOM05D000361 ORTHO05D008294 1.1e-07 59.7 47 63.8
CANSAT35G1399 Cannabis sativa HOM05D000361 ORTHO05D008294 1.5e-07 59.3 57 54.4
Ca_17753_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008294 1.5e-07 59.3 47 66.0
MD05G1242400 Malus domestica HOM05D000361 ORTHO05D008294 1.5e-07 59.3 47 59.6
Medtr8g090000 Medicago truncatula HOM05D000361 ORTHO05D008294 1.5e-07 59.3 47 66.0
Psat7g056760 Pisum sativum HOM05D000361 ORTHO05D008294 1.5e-07 59.3 47 66.0
TPR.G6256 Trifolium pratense HOM05D000361 ORTHO05D008294 1.5e-07 59.3 47 66.0
arahy.Tifrunner.gnm1.ann1.76Y6MV Arachis hypogaea HOM05D000361 ORTHO05D008294 1.9e-07 58.9 55 61.8
arahy.Tifrunner.gnm1.ann1.QR0DXW Arachis hypogaea HOM05D000361 ORTHO05D008294 1.9e-07 58.9 55 61.8
RcHm_v2.0_Chr5g0022071 Rosa chinensis HOM05D000361 ORTHO05D008294 1.9e-07 58.9 47 66.0
EL10Ac7g17302 Beta vulgaris HOM05D000361 ORTHO05D008294 3.3e-07 58.2 67 52.2
C02p45230 Brassica napus HOM05D000361 ORTHO05D020223 3.3e-07 58.2 43 67.4
FvH4_3g13360 Fragaria vesca HOM05D000361 ORTHO05D008294 3.3e-07 58.2 47 66.0
FAN11G3268 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.3e-07 58.2 47 66.0
FAN16G0385 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.3e-07 58.2 47 66.0
FAN21G0569 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.3e-07 58.2 47 66.0
SalBow6G5453 Salvia bowleyana HOM05D000361 ORTHO05D008294 5.6e-07 57.4 48 56.2
FAN25G0043 Fragaria x ananassa HOM05D000361 ORTHO05D008294 7.3e-07 57.0 47 63.8
FAN25G0195 Fragaria x ananassa HOM05D000361 ORTHO05D008294 7.3e-07 57.0 47 63.8
Ah.15g091830 Amaranthus hybridus HOM05D000361 ORTHO05D008294 9.6e-07 56.6 47 63.8
BcaC03g16683 Brassica carinata HOM05D000361 ORTHO05D008294 9.6e-07 56.6 43 65.1
Os05g0235800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008294 9.6e-07 56.6 47 59.6
VMungo1309G2334 Vigna mungo HOM05D000361 ORTHO05D008294 1.6e-06 55.8 55 58.2
PGR044G0817 Punica granatum HOM05D000361 ORTHO05D008294 2.1e-06 55.5 45 60.0
Lalb_Chr18g0051851 Lupinus albus HOM05D000361 ORTHO05D008294 4.7e-06 54.3 47 63.8


User provided reference genes

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