Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017480.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.8e-67 257.7 128 100.0
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-46 189.5 133 74.4
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.6e-46 188.0 143 68.5
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.6e-46 188.0 143 68.5
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.6e-46 188.0 143 68.5
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.6e-46 188.0 143 68.5
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.6e-46 188.0 143 68.5
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 7.9e-46 187.2 143 69.2
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.3e-45 186.4 133 72.2
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.3e-45 186.4 133 72.2
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 3.9e-45 184.9 142 69.0
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 1.1e-44 183.3 142 68.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.1e-44 183.3 143 67.8
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.5e-44 183.0 142 67.6
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.5e-44 183.0 142 67.6
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 1.9e-44 182.6 143 67.1
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.5e-44 182.2 142 67.6
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.5e-44 182.2 142 67.6
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 3.3e-44 181.8 142 67.6
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 3.3e-44 181.8 142 67.6
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-44 181.4 142 66.9
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.3e-44 181.4 133 72.2
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 5.7e-44 181.0 132 71.2
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 1.3e-43 179.9 143 66.4
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.6e-43 179.5 133 70.7
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 2.8e-43 178.7 142 66.9
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 1.1e-42 176.8 132 71.2
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 2.6e-41 172.2 136 67.6
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-41 171.4 133 69.9
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 7.7e-41 170.6 133 67.7
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 2.2e-40 169.1 123 69.9
BolC2t10590H Brassica oleracea HOM05D001070 ORTHO05D002096 5.0e-40 167.9 106 77.4
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-39 166.8 132 66.7
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.4e-39 166.4 122 70.5
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.9e-39 166.0 125 68.0
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 1.9e-39 166.0 122 69.7
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.9e-39 166.0 142 62.7
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.9e-39 166.0 142 62.7
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 2.5e-39 165.6 118 72.0
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.5e-39 165.6 142 62.0
Gohir.D13G086633 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.5e-39 165.6 142 62.0
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.5e-39 165.6 118 72.9
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 4.2e-39 164.9 132 66.7
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.2e-39 164.9 96 82.3
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 1.2e-38 163.3 107 76.6
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.6e-38 162.9 142 62.0
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 1.6e-38 162.9 132 65.9
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 1.6e-38 162.9 132 65.9
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 1.6e-38 162.9 132 65.9
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.8e-37 159.5 142 59.9
Nitab4.5_0004697g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.8e-37 159.5 125 68.8
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.3e-37 159.1 126 66.7
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.3e-37 159.1 126 66.7
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 5.1e-37 157.9 115 70.4
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 5.1e-37 157.9 143 62.2
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 5.7e-36 154.5 143 59.4
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 1.7e-35 152.9 132 63.6
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 8.2e-35 150.6 129 62.0
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-34 150.2 96 77.1
HanXRQChr09g0275321 Helianthus annuus HOM05D001070 ORTHO05D002096 5.3e-34 147.9 126 63.5
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.2e-33 146.7 113 72.6
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.2e-33 146.7 120 67.5
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.3e-32 143.3 122 62.3
HanXRQChr12g0376641 Helianthus annuus HOM05D001070 ORTHO05D002096 2.2e-32 142.5 96 72.9
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-30 134.8 117 63.2
BolSC37t60788H Brassica oleracea HOM05D001070 ORTHO05D002096 1.0e-29 133.7 106 66.0
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 1.8e-29 132.9 143 53.8
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 5.1e-29 131.3 103 67.0
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 1.3e-27 126.7 147 49.0
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 8.2e-27 124.0 70 88.6
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 3.1e-26 122.1 138 52.9
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 9.1e-26 120.6 112 58.9
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 2.6e-25 119.0 145 49.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 8.5e-24 114.0 143 46.2
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 2.5e-23 112.5 131 50.4
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 2.5e-23 112.5 131 50.4
Gohir.D05G248050 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-22 110.2 142 47.9
Hund22091 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-22 109.4 99 59.6
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 1.0e-21 107.1 72 75.0
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 1.0e-21 107.1 62 87.1
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.8e-21 106.3 99 58.6
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 1.8e-21 106.3 136 48.5
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.3e-21 105.9 139 48.2
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 3.0e-21 105.5 115 50.4
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
BolSC29t60620H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
BolSC35t60697H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
BraSC25t45916Z Brassica rapa HOM05D001070 ORTHO05D002096 6.7e-21 104.4 72 73.6
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 2.0e-20 102.8 124 49.2
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.0e-20 102.8 96 58.3
Gorai.009G258900 Gossypium raimondii HOM05D001070 ORTHO05D002096 5.7e-20 101.3 142 44.4
Gohir.A11G056832 Gossypium hirsutum HOM05D001070 ORTHO05D002096 7.4e-20 100.9 72 70.8
Solyc01g017240.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-19 99.4 62 80.6
HanXRQChr17g0557701 Helianthus annuus HOM05D001070 ORTHO05D002096 1.1e-18 97.1 62 77.4
RcHm_v2.0_Chr2g0135101 Rosa chinensis HOM05D001070 ORTHO05D002096 1.1e-18 97.1 97 56.7
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.4e-18 95.9 72 69.4
HanXRQChr14g0428451 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-18 95.5 62 75.8
HanXRQChr14g0428511 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-18 95.5 62 75.8
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 4.1e-18 95.1 79 62.0
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 5.3e-18 94.7 78 61.5
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 5.3e-18 94.7 78 61.5
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 5.3e-18 94.7 78 61.5
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 7.0e-18 94.4 62 75.8
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 2.0e-17 92.8 108 48.1
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 2.0e-17 92.8 61 82.0
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 5.9e-17 91.3 78 60.3
Lsat_1_v5_gn_6_14481 Lactuca sativa HOM05D001070 ORTHO05D002096 1.0e-16 90.5 62 69.4
MELO3C030628.2 Cucumis melo HOM05D001070 ORTHO05D002096 1.3e-16 90.1 61 75.4
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 2.2e-16 89.4 79 59.5
MELO3C027943.2 Cucumis melo HOM05D001070 ORTHO05D002096 2.9e-16 89.0 73 63.0
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 2.5e-15 85.9 79 59.5
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 3.2e-15 85.5 79 57.0
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 3.2e-15 85.5 72 58.3
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 1.6e-14 83.2 104 47.1
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 1.6e-14 83.2 52 78.8
Oeu011447.1 Olea europaea HOM05D001070 ORTHO05D002096 1.6e-14 83.2 95 51.6
Hund11512 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.1e-14 82.8 130 42.3
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.7e-14 82.4 123 43.9
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 3.6e-14 82.0 78 57.7
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 4.7e-14 81.6 42 83.3
Gorai.011G154800 Gossypium raimondii HOM05D001070 ORTHO05D002096 4.7e-14 81.6 119 46.2
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 6.1e-14 81.3 78 56.4
Oeu011446.1 Olea europaea HOM05D001070 ORTHO05D002096 1.0e-13 80.5 95 50.5
Gohir.D10G139001 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.3e-13 79.3 119 45.4
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 1.5e-12 76.6 77 53.2
Medtr1g110440 Medicago truncatula HOM05D001070 ORTHO05D002096 1.4e-10 70.1 96 42.7
TPR.G34535 Trifolium pratense HOM05D001070 ORTHO05D002096 1.6e-09 66.6 66 54.5
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 7.7e-09 64.3 61 55.7
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 7.7e-09 64.3 61 55.7
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 1.3e-08 63.5 62 54.8
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 2.9e-08 62.4 60 55.0
arahy.Tifrunner.gnm1.ann1.XG10WT Arachis hypogaea HOM05D001070 ORTHO05D002096 5.0e-08 61.6 76 44.7
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 5.0e-08 61.6 45 68.9
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.0e-08 61.6 116 38.8
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-07 59.7 132 35.6
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-07 59.7 132 35.6
Hund03954 Selenicereus undatus HOM05D001070 ORTHO05D002096 2.5e-07 59.3 51 58.8
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 4.2e-07 58.5 72 44.4
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 4.2e-07 58.5 72 44.4
Nitab4.5_0002691g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.1e-06 56.2 38 73.7
BraSC59t46532Z Brassica rapa HOM05D001070 ORTHO05D002096 2.7e-06 55.8 43 65.1
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 4.7e-06 55.1 57 52.6


User provided reference genes

Program Settings