Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017250.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.1e-60 234.2 116 100.0
CAN.G1.24 Capsicum annuum HOM05D002965 ORTHO05D011846 2.0e-27 125.9 69 88.4
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 6.3e-26 120.9 62 91.9
Sopen05g012600 Solanum pennellii HOM05D012137 ORTHO05D011846 6.3e-26 120.9 62 91.9
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 4.1e-25 118.2 64 87.5
Solyc11g045440.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 1.6e-21 106.3 57 82.5
Sopen06g007640 Solanum pennellii HOM05D002965 ORTHO05D012151 1.6e-21 106.3 61 83.6
CAN.G929.2 Capsicum annuum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-16 88.2 46 93.5
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.3e-15 86.7 47 89.4
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 2.2e-15 85.9 46 91.3
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 3.8e-15 85.1 46 91.3
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 5.0e-15 84.7 46 89.1
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 5.0e-15 84.7 46 89.1
Nn029s41580 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 6.5e-15 84.3 46 89.1
Solyc05g047440.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-14 83.6 46 89.1
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.9e-14 82.8 46 89.1
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.5e-14 82.4 46 87.0
PSO541G5077 Papaver somniferum HOM05D001070 ORTHO05D002096 3.2e-14 82.0 46 87.0
Solyc11g021180.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.2e-14 82.0 47 87.2
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 4.2e-14 81.6 46 87.0
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 5.5e-14 81.3 46 84.8
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 5.5e-14 81.3 46 84.8
Glyma.01G114300 Glycine max HOM05D001070 ORTHO05D002096 7.2e-14 80.9 45 84.4
arahy.Tifrunner.gnm1.ann1.0FQ6JR Arachis hypogaea HOM05D001070 ORTHO05D002096 9.4e-14 80.5 46 84.8
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 9.4e-14 80.5 49 85.7
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 9.4e-14 80.5 49 85.7
Phvul.007G021600 Phaseolus vulgaris HOM05D001070 ORTHO05D002096 9.4e-14 80.5 46 80.4
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.4e-14 80.5 44 90.9
MELO3C008746.2 Cucumis melo HOM05D001070 ORTHO05D002096 2.1e-13 79.3 42 88.1
CSS0027235 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 2.7e-13 79.0 49 83.7
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 2.7e-13 79.0 46 84.8
DCAR_011103 Daucus carota HOM05D001070 ORTHO05D002096 2.7e-13 79.0 48 85.4
AL5G20280 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
ATMG00370 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
C09p40290 Brassica napus HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC29t60513H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC29t60542H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC35t60685H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC37t60800H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC45t60902H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BolSC47t61060H Brassica oleracea HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC103t45423Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC48t46326Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
CARHR282770 Cardamine hirsuta HOM05D001070 ORTHO05D002096 3.6e-13 78.6 49 83.7
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 4.7e-13 78.2 46 80.4
HanXRQChr00c0561g0575891 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
HanXRQChr06g0182961 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
HanXRQChr09g0258561 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
HanXRQChr11g0347371 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
HanXRQChr14g0430911 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
HanXRQChr17g0569781 Helianthus annuus HOM05D001070 ORTHO05D002096 4.7e-13 78.2 49 83.7
MSTRG.27595 Avicennia marina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 83.7
BolC2t10605H Brassica oleracea HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 83.7
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10013927m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10027641m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 81.6
PGR081G0002 Punica granatum HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 83.7
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 6.1e-13 77.8 49 83.7
Solyc11g044670.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 6.1e-13 77.8 46 84.8
Lalb_Chr07g0191691 Lupinus albus HOM05D001070 ORTHO05D002096 8.0e-13 77.4 46 82.6
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 8.0e-13 77.4 46 82.6
arahy.Tifrunner.gnm1.ann1.13XSJR Arachis hypogaea HOM05D001070 ORTHO05D002096 1.0e-12 77.0 46 82.6
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 1.0e-12 77.0 49 81.6
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 1.0e-12 77.0 49 81.6
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 1.0e-12 77.0 45 75.6
Medtr5g080950 Medicago truncatula HOM05D001070 ORTHO05D002096 1.0e-12 77.0 45 75.6
Solyc11g039900.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.0e-12 77.0 46 80.4
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.4e-12 76.6 49 81.6
AT2G07739 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 1.8e-12 76.3 49 81.6
CANSAT78G0545 Cannabis sativa HOM05D001070 ORTHO05D002096 1.8e-12 76.3 50 78.0
Lalb_Chr16g0388601 Lupinus albus HOM05D001070 ORTHO05D002096 1.8e-12 76.3 46 82.6
Manes.11G122808 Manihot esculenta HOM05D001070 ORTHO05D002096 1.8e-12 76.3 49 79.6
RcHm_v2.0_Chr7g0221181 Rosa chinensis HOM05D001070 ORTHO05D002096 2.3e-12 75.9 49 81.6
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 3.0e-12 75.5 49 79.6
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 5.2e-12 74.7 50 78.0
Lalb_Chr00c06g0404661 Lupinus albus HOM05D001070 ORTHO05D002096 6.8e-12 74.3 46 80.4
Lalb_Chr13g0293691 Lupinus albus HOM05D001070 ORTHO05D002096 6.8e-12 74.3 46 80.4
CSS0017227 Camellia sinensis var. sinensis HOM05D001070 ORTHO05D002096 8.8e-12 73.9 49 79.6
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.8e-12 73.9 41 87.8
BolSC29t60552H Brassica oleracea HOM05D001070 ORTHO05D002096 1.5e-11 73.2 49 79.6
ClCG04G001030 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.5e-11 73.2 44 84.1
Medtr2126s0020 Medicago truncatula HOM05D001070 ORTHO05D002096 1.5e-11 73.2 49 75.5
Gohir.D13G124850 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.6e-11 72.4 49 73.5
Nn2g13236 Nelumbo nucifera HOM05D001070 ORTHO05D002096 2.6e-11 72.4 47 72.3
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.4e-11 72.0 49 75.5
HanXRQChr11g0336631 Helianthus annuus HOM05D001070 ORTHO05D002096 3.4e-11 72.0 49 75.5
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 7.5e-11 70.9 49 73.5
Lju5009P0T27 Lonicera japonica HOM05D001070 ORTHO05D002096 7.5e-11 70.9 45 73.3
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 9.8e-11 70.5 46 78.3
Gorai.011G154800 Gossypium raimondii HOM05D001070 ORTHO05D002096 1.7e-10 69.7 49 71.4
BolSC43t60809H Brassica oleracea HOM05D001070 ORTHO05D002096 2.2e-10 69.3 51 76.5
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-10 68.9 47 74.5
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-10 68.9 49 73.5
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 4.8e-10 68.2 49 69.4
Gohir.D10G139001 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.3e-10 67.8 50 68.0
Oeu054714.1 Olea europaea HOM05D001070 ORTHO05D002096 6.3e-10 67.8 40 82.5
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 8.3e-10 67.4 46 69.6
Actinidia34858 Actinidia chinensis HOM05D002965 ORTHO05D011846 3.1e-09 65.5 40 82.5
Gohir.A09G216580 Gossypium hirsutum HOM05D001070 ORTHO05D002096 3.1e-09 65.5 49 67.3
Nitab4.5_0001574g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.1e-09 65.5 42 73.8
Psat0s1160g0280 Pisum sativum HOM05D001070 ORTHO05D002096 3.1e-09 65.5 46 67.4
Nn349s46479 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.1e-09 65.1 36 86.1
Lsat_1_v5_gn_2_31300 Lactuca sativa HOM05D001070 ORTHO05D002096 5.4e-09 64.7 48 72.9
Gohir.D06G105240 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.7e-08 62.4 47 68.1
Solyc11g056260.2 Solanum lycopersicum HOM05D002965 ORTHO05D011846 2.7e-08 62.4 33 90.9
Solyc09g057840.1 Solanum lycopersicum HOM05D002965 ORTHO05D390637 4.5e-08 61.6 48 64.6
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 5.9e-08 61.2 36 83.3
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 7.7e-08 60.8 49 59.2
PGSC0003DMG400010649 Solanum tuberosum HOM05D001070 ORTHO05D002096 1.0e-07 60.5 32 90.6
BraSC59t46505Z Brassica rapa HOM05D001070 ORTHO05D002096 1.3e-07 60.1 36 77.8
Sopen12g028350 Solanum pennellii HOM05D000004 ORTHO05D000034 8.6e-07 57.4 27 92.6
Psat1g157760 Pisum sativum HOM05D001070 ORTHO05D002096 1.1e-06 57.0 41 65.9
Hund01218 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund08795 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund17849 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund27460 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund27754 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund27829 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund28436 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund28590 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund28611 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund28771 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29267 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29396 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29401 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29746 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
Hund29772 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.5e-06 56.6 51 60.8
C03p28320 Brassica napus HOM05D001070 ORTHO05D002096 3.3e-06 55.5 40 75.0
BolC2t10608H Brassica oleracea HOM05D001070 ORTHO05D002096 3.3e-06 55.5 53 60.4
arahy.Tifrunner.gnm1.ann1.XG10WT Arachis hypogaea HOM05D001070 ORTHO05D002096 4.2e-06 55.1 30 83.3
Glyma.02G189000 Glycine max HOM05D001070 ORTHO05D002096 4.2e-06 55.1 38 68.4
Gohir.A13G082266 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.5e-06 54.7 49 57.1
HanXRQChr13g0416561 Helianthus annuus HOM05D001070 ORTHO05D002096 5.5e-06 54.7 45 66.7
RcHm_v2.0_Chr4g0392781 Rosa chinensis HOM05D001070 ORTHO05D002096 5.5e-06 54.7 34 82.4
Migut.D01388 Erythranthe guttata HOM05D001070 ORTHO05D002096 7.2e-06 54.3 36 72.2
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.2e-06 54.3 30 86.7
Sc10g0007490 Simmondsia chinensis HOM05D001070 ORTHO05D002096 9.5e-06 53.9 39 71.8


User provided reference genes

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