Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017230.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.7e-52 208.4 103 100.0
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 5.4e-29 131.0 176 45.5
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.1e-26 123.2 176 43.2
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-26 121.7 176 41.5
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-26 121.7 176 41.5
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-26 121.7 176 41.5
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-26 121.7 176 41.5
Solyc12g033070.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.5e-26 120.2 67 83.6
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 8.9e-24 113.6 176 39.8
PGSC0003DMG400010958 Solanum tuberosum HOM05D001750 ORTHO05D001825 7.1e-21 104.0 60 80.0
Lj9P89T20 Lonicera japonica HOM05D001750 ORTHO05D001825 1.4e-13 79.7 72 58.3
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 5.4e-13 77.8 69 56.5
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.6e-12 76.3 176 31.8
Solyc01g017110.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-11 72.8 117 43.6
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 2.3e-11 72.4 71 53.5
Oeu012766.1 Olea europaea HOM05D001750 ORTHO05D001825 2.3e-11 72.4 62 58.1
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 1.1e-10 70.1 73 50.7
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-10 70.1 185 32.4
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 1.1e-10 70.1 185 32.4
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 2.5e-10 68.9 73 56.2
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 9.6e-10 67.0 185 31.9
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-09 66.6 73 50.7
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 1.3e-09 66.6 73 50.7
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.8e-09 65.5 73 50.7
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 3.6e-09 65.1 181 30.9
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 3.6e-09 65.1 181 30.9
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 3.6e-09 65.1 181 30.9
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 3.6e-09 65.1 74 52.7
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 4.8e-09 64.7 73 49.3
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 6.2e-09 64.3 67 50.7
BolSC35t60699H Brassica oleracea HOM05D001750 ORTHO05D001825 8.1e-09 63.9 73 49.3
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 8.1e-09 63.9 186 30.1
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 8.1e-09 63.9 67 49.3
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.1e-08 63.5 179 31.3
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-08 62.8 69 49.3
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-08 62.8 69 49.3
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-08 62.8 69 49.3
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-08 62.8 69 49.3
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 1.8e-08 62.8 181 30.4
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 5.3e-08 61.2 67 47.8
Medtr3g032590 Medicago truncatula HOM05D000267 ORTHO05D016230 6.9e-08 60.8 101 40.6
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 6.9e-08 60.8 65 50.8
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 9.0e-08 60.5 40 67.5
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 1.7e-06 56.2 69 44.9
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 3.8e-06 55.1 37 64.9
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 4.9e-06 54.7 36 66.7
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 6.4e-06 54.3 70 41.4
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 8.4e-06 53.9 40 60.0


User provided reference genes

Program Settings