Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017160.2 Solanum lycopersicum HOM05D000729 ORTHO05D001063 6.2e-11 69.3 33 100.0
Gorai.010G067500 Gossypium raimondii HOM05D000729 ORTHO05D001063 1.7e-08 61.2 32 87.5
EL10Ac5g11886 Beta vulgaris HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
EL10As15g24113 Beta vulgaris HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G1021.15 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G1045.7 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G1148.5 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G1191.10 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G1875.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G21.56 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G267.19 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G343.3 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
CAN.G547.17 Capsicum annuum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Migut.D01404 Erythranthe guttata HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
FAN24G1010 Fragaria x ananassa HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gohir.A05G323796 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gohir.A09G046338 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gohir.A11G180330 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gohir.D01G101839 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gohir.D02G117466 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Gorai.003G150500 Gossypium raimondii HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0264g0572891 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0386g0574421 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0434g0574661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0451g0574811 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0533g0575531 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0554g0575661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0572g0575991 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0585g0576201 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr00c0788g0577381 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr01g0020151 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr05g0150471 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr05g0152351 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr05g0152491 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr07g0194901 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr10g0284481 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr10g0317951 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr11g0321181 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr11g0327111 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr11g0333791 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr12g0369921 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr13g0416581 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr13g0418941 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr17g0567651 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQChr17g0569661 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQCPg0580271 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
HanXRQCPg0580451 Helianthus annuus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Hma1.2p1_0052F.1_g030753 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Hma1.2p1_0052F.1_g030756 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Hma1.2p1_1244F.1_g270050 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Hma1.2p1_1244F.1_g270060 Hydrangea macrophylla HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Lsat_1_v5_gn_3_92301 Lactuca sativa HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Lsat_1_v5_gn_9_18660 Lactuca sativa HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
LjContig00489g0003974 Lotus japonicus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Lalb_Chr05g0227471 Lupinus albus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Lalb_Chr07g0191911 Lupinus albus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Lalb_Chr12g0206641 Lupinus albus HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn029s41589 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn206s45070 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn219s45285 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn233s45562 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn241s45687 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Nn269s46006 Nelumbo nucifera HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
PSO548G0058 Papaver somniferum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
PSO548G0065 Papaver somniferum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
PGR111G0104 Punica granatum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
PGR111G0125 Punica granatum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
QL93p0823_0001 Quercus lobata HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
RcHm_v2.0_Chr2g0118411 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
RcHm_v2.0_Chr5g0051111 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
RcHm_v2.0_CPg0501771 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
RcHm_v2.0_CPg0502641 Rosa chinensis HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Sed0001647 Sechium edule HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Solyc00g500146.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
Solyc10g061887.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 2.2e-08 60.8 32 87.5
arahy.Tifrunner.gnm1.ann1.R4S00L Arachis hypogaea HOM05D000729 ORTHO05D001063 3.8e-08 60.1 32 87.5
LjContig00319g0001918 Lotus japonicus HOM05D000729 ORTHO05D001063 4.9e-08 59.7 32 84.4
Medtr3g035660 Medicago truncatula HOM05D000729 ORTHO05D001063 4.9e-08 59.7 32 84.4
Gohir.D02G143001 Gossypium hirsutum HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 81.2
Gorai.005G160600 Gossypium raimondii HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 81.2
Lj2P1238T95 Lonicera japonica HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 84.4
Lj2P1239T117 Lonicera japonica HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 84.4
Phvul.003G089803 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 84.4
Phvul.009G090284 Phaseolus vulgaris HOM05D000729 ORTHO05D001063 6.4e-08 59.3 32 84.4
Gorai.003G065500 Gossypium raimondii HOM05D000729 ORTHO05D001063 8.4e-08 58.9 32 84.4
Lsat_1_v5_gn_4_11820 Lactuca sativa HOM05D000729 ORTHO05D001063 8.4e-08 58.9 32 84.4
Nitab4.5_0018575g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 8.4e-08 58.9 32 84.4
Solyc11g021090.3 Solanum lycopersicum HOM05D000729 ORTHO05D001063 8.4e-08 58.9 32 84.4
CSS0038723 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 1.1e-07 58.5 32 84.4
Medtr0002s0310 Medicago truncatula HOM05D000729 ORTHO05D001063 1.1e-07 58.5 32 84.4
arahy.Tifrunner.gnm1.ann1.8IFR8Y Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.A85ADF Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.FU0XIN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.NGJ0AN Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.NIYG2M Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
arahy.Tifrunner.gnm1.ann1.S6TNUT Arachis hypogaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
Cpa.g.sc2.66 Carica papaya HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 81.2
Oeu012825.1 Olea europaea HOM05D000729 ORTHO05D001063 1.4e-07 58.2 32 84.4
AL1G51260 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
AL2G21870 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
AL7G44080 Arabidopsis lyrata HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BolSC29t60494H Brassica oleracea HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BolSC29t60537H Brassica oleracea HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BolSC45t60922H Brassica oleracea HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BolSC47t61055H Brassica oleracea HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BraSC103t45436Z Brassica rapa HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BraSC103t45493Z Brassica rapa HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BraSC25t45897Z Brassica rapa HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BraSC59t46538Z Brassica rapa HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
BraSC59t46561Z Brassica rapa HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
Gohir.D06G107201 Gossypium hirsutum HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 84.4
Nitab4.5_0004929g0010 Nicotiana tabacum HOM05D000729 ORTHO05D001063 1.9e-07 57.8 32 81.2
Gohir.D11G234166 Gossypium hirsutum HOM05D000729 ORTHO05D001063 2.4e-07 57.4 32 81.2
CSS0015256 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 81.2
CSS0022865 Camellia sinensis var. sinensis HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 81.2
CAN.G262.3 Capsicum annuum HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 84.4
DCAR_032530 Daucus carota HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 81.2
DCAR_032546 Daucus carota HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 81.2
HanXRQChr03g0064311 Helianthus annuus HOM05D000729 ORTHO05D001063 3.2e-07 57.0 32 84.4
ATCG00890 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 4.2e-07 56.6 32 81.2
ATCG01250 Arabidopsis thaliana HOM05D000729 ORTHO05D001063 4.2e-07 56.6 32 81.2
Lj4g0028091 Lotus japonicus HOM05D000729 ORTHO05D001063 4.2e-07 56.6 32 81.2
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 4.2e-07 56.6 32 81.2
SabraPtG0004800 Salix brachista HOM05D000729 ORTHO05D001063 4.2e-07 56.6 32 81.2
Solyc02g011910.1 Solanum lycopersicum HOM05D000729 ORTHO05D001063 4.2e-07 56.6 33 81.8
EL10As12g24040 Beta vulgaris HOM05D000729 ORTHO05D001063 5.4e-07 56.2 32 81.2
Gohir.A02G077402 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.4e-07 56.2 32 81.2
Gohir.A08G249972 Gossypium hirsutum HOM05D000729 ORTHO05D001063 5.4e-07 56.2 32 87.5
arahy.Tifrunner.gnm1.ann1.0BYT70 Arachis hypogaea HOM05D000729 ORTHO05D001063 1.6e-06 54.7 32 81.2
Glyma.05G094500 Glycine max HOM05D000729 ORTHO05D001063 2.1e-06 54.3 32 78.1
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 2.7e-06 53.9 30 80.0


User provided reference genes

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