Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017145.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.8e-35 149.8 71 100.0
HanXRQChr13g0418951 Helianthus annuus HOM05D000445 ORTHO05D000314 4.7e-16 87.4 50 84.0
Peaxi162Scf00603g00013 Petunia axillaris HOM05D000445 ORTHO05D000314 8.1e-16 86.7 64 70.3
Ah.10g027230 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Ah.10g027290 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Ah.10g027420 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Ah.10g027670 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Ah.10g027730 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Ah.10g028850 Amaranthus hybridus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
CAN.G1875.2 Capsicum annuum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
CAN.G219.11 Capsicum annuum HOM05D000445 ORTHO05D010400 1.4e-15 85.9 50 84.0
CAN.G343.2 Capsicum annuum HOM05D000445 ORTHO05D010400 1.4e-15 85.9 50 84.0
CAN.G745.36 Capsicum annuum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Lalb_Chr01g0014981 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 82.0
Lalb_Chr07g0191931 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 82.0
Lalb_Chr12g0206621 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 82.0
Lalb_Chr13g0292661 Lupinus albus HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 82.0
Nitab4.5_0010831g0050 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Peaxi162Scf00058g00822 Petunia axillaris HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
Sopen10g008920 Solanum pennellii HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
PGSC0003DMG400015064 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
PGSC0003DMG400020533 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
PGSC0003DMG400046719 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
PGSC0003DMG402024143 Solanum tuberosum HOM05D000445 ORTHO05D000314 1.4e-15 85.9 50 84.0
arahy.Tifrunner.gnm1.ann1.SV0IPA Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-15 85.1 50 80.0
arahy.Tifrunner.gnm1.ann1.U896IL Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-15 85.1 50 80.0
arahy.Tifrunner.gnm1.ann1.Z1U5RE Arachis hypogaea HOM05D000445 ORTHO05D000314 2.3e-15 85.1 50 80.0
BNapus_Darmor_BZH_scaffold_287p00320 Brassica napus HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
C06p21350 Brassica napus HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
C06p23170 Brassica napus HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
C09p24760 Brassica napus HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
BolSC29t60492H Brassica oleracea HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
BolSC47t61071H Brassica oleracea HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
BolSC49t61212H Brassica oleracea HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
BraSC25t45894Z Brassica rapa HOM05D000445 ORTHO05D000314 4.0e-15 84.3 50 80.0
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0349g0573991 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0434g0574671 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0451g0574821 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0533g0575541 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0572g0575981 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0585g0576211 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr00c0634g0576591 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr01g0020161 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr05g0152341 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr05g0152501 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr10g0284471 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr11g0321171 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr11g0327091 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr11g0333801 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr12g0369911 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr13g0416591 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr15g0474951 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQChr17g0569651 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQCPg0580251 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
HanXRQCPg0580471 Helianthus annuus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_0_15580 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_3_104600 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_4_147941 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_7_920 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lsat_1_v5_gn_9_18681 Lactuca sativa HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 82.0
Lj4g0020232 Lotus japonicus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 78.0
LjContig00318g0022366 Lotus japonicus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 78.0
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 78.0
LjContig00319g0026737 Lotus japonicus HOM05D000445 ORTHO05D000314 5.2e-15 84.0 50 78.0
AUR62032991 Chenopodium quinoa HOM05D000445 ORTHO05D000314 6.8e-15 83.6 50 82.0
Dinv09726 Davidia involucrata HOM05D000445 ORTHO05D000314 6.8e-15 83.6 50 82.0
Nitab4.5_0004920g0020 Nicotiana tabacum HOM05D000445 ORTHO05D000314 6.8e-15 83.6 50 80.0
Peaxi162Scf00163g00089 Petunia axillaris HOM05D000445 ORTHO05D000314 6.8e-15 83.6 50 82.0
Solyc08g029410.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 6.8e-15 83.6 64 67.2
Ah.10g029020 Amaranthus hybridus HOM05D000445 ORTHO05D000314 8.9e-15 83.2 50 80.0
CAN.G547.16 Capsicum annuum HOM05D000445 ORTHO05D000314 8.9e-15 83.2 50 82.0
AUR62030850 Chenopodium quinoa HOM05D000445 ORTHO05D000314 1.2e-14 82.8 50 80.0
ATCG00860 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-14 82.4 50 78.0
ATCG01280 Arabidopsis thaliana HOM05D000445 ORTHO05D000314 1.5e-14 82.4 50 78.0
CARHR282560 Cardamine hirsuta HOM05D000445 ORTHO05D000314 1.5e-14 82.4 50 78.0
Nitab4.5_0000223g0170 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-14 82.4 64 65.6
DCAR_031999 Daucus carota HOM05D000445 ORTHO05D000314 2.0e-14 82.0 50 80.0
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 2.0e-14 82.0 50 80.0
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 2.0e-14 82.0 50 80.0
Nn031s41601 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.6e-14 81.6 50 80.0
Nn233s45563 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.6e-14 81.6 50 80.0
Nn269s46007 Nelumbo nucifera HOM05D000445 ORTHO05D000314 2.6e-14 81.6 50 80.0
Nitab4.5_0011099g0040 Nicotiana tabacum HOM05D000445 ORTHO05D036881 3.4e-14 81.3 50 80.0
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 80.0
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 80.0
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 78.0
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 78.0
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 78.0
Solyc00g500239.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 80.0
Solyc00g500304.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 80.0
Solyc11g063577.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 3.4e-14 81.3 50 80.0
Gohir.D01G101865 Gossypium hirsutum HOM05D000445 ORTHO05D000314 4.4e-14 80.9 50 78.0
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.4e-14 80.9 52 80.8
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.4e-14 80.9 52 80.8
Hma1.2p1_1244F.1_g270040 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.4e-14 80.9 52 80.8
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 4.4e-14 80.9 52 80.8
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 5.8e-14 80.5 55 70.9
Aqoxy3G01863 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 5.8e-14 80.5 55 70.9
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 5.8e-14 80.5 50 80.0
unitig_91.g26516 Utricularia gibba HOM05D000445 ORTHO05D000314 5.8e-14 80.5 50 80.0
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 5.8e-14 80.5 50 80.0
HanXRQChr00c0454g0574911 Helianthus annuus HOM05D000445 ORTHO05D000314 7.5e-14 80.1 48 81.2
Solyc00g500147.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 7.5e-14 80.1 50 78.0
Cfa015164 Carpinus fangiana HOM05D000445 ORTHO05D000314 9.9e-14 79.7 50 78.0
Solyc10g019010.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.7e-13 79.0 50 78.0
Ah.08g222970 Amaranthus hybridus HOM05D000445 ORTHO05D000314 2.2e-13 78.6 50 76.0
BolSC45t60924H Brassica oleracea HOM05D000445 ORTHO05D000314 3.7e-13 77.8 55 69.1
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 3.7e-13 77.8 50 76.0
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 3.7e-13 77.8 50 76.0
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 4.9e-13 77.4 50 76.0
Gorai.002G166000 Gossypium raimondii HOM05D000445 ORTHO05D000314 6.4e-13 77.0 50 72.0
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 8.3e-13 76.6 50 74.0
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 8.3e-13 76.6 50 74.0
Solyc07g021110.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.1e-12 76.3 71 63.4
MELO3C027250.2 Cucumis melo HOM05D000445 ORTHO05D000314 1.4e-12 75.9 50 74.0
Nitab4.5_0000223g0180 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.2e-12 74.7 64 62.5
Nitab4.5_0000779g0100 Nicotiana tabacum HOM05D000445 ORTHO05D000314 3.2e-12 74.7 50 76.0
Sopen02g009120 Solanum pennellii HOM05D000445 ORTHO05D000314 5.4e-12 73.9 49 77.6
Ah.10g028580 Amaranthus hybridus HOM05D000445 ORTHO05D000314 7.1e-12 73.6 41 85.4
EL10As15g24112 Beta vulgaris HOM05D000445 ORTHO05D000314 7.1e-12 73.6 50 74.0
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 7.1e-12 73.6 50 74.0
Glyma.16G065300 Glycine max HOM05D000445 ORTHO05D000314 7.1e-12 73.6 50 72.0
FAN08G2610 Fragaria x ananassa HOM05D000445 ORTHO05D000314 2.1e-11 72.0 48 70.8
VMungo0942G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.7e-11 71.6 50 72.0
VMungo0976G0001 Vigna mungo HOM05D000445 ORTHO05D000314 2.7e-11 71.6 50 72.0
EL10As12g24038 Beta vulgaris HOM05D000445 ORTHO05D000314 3.5e-11 71.2 50 70.0
CsaV3_UNG209000 Cucumis sativus L. HOM05D000445 ORTHO05D000314 4.6e-11 70.9 54 72.2
Hund01217 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund08796 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund10280 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund17850 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund26852 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund27459 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund27753 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund27920 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund27936 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28275 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28435 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28591 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28610 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28646 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund28854 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29332 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29402 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29423 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29470 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29473 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29490 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund29892 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund30293 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund30787 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund30982 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Hund31112 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.7e-10 68.9 52 71.2
Medtr3g035670 Medicago truncatula HOM05D000445 ORTHO05D000314 3.9e-10 67.8 48 72.9
RcHm_v2.0_Chr2g0102151 Rosa chinensis HOM05D000445 ORTHO05D000314 5.1e-10 67.4 45 71.1
Psat0s1661g0120 Pisum sativum HOM05D000445 ORTHO05D000314 1.5e-09 65.9 49 65.3
Psat0s2065g0040 Pisum sativum HOM05D000445 ORTHO05D000314 1.5e-09 65.9 49 65.3
Psat0s680g0040 Pisum sativum HOM05D000445 ORTHO05D000314 1.5e-09 65.9 49 65.3
Psat2g138200 Pisum sativum HOM05D000445 ORTHO05D000314 1.5e-09 65.9 49 65.3
Sed0004640 Sechium edule HOM05D000445 ORTHO05D000314 2.5e-09 65.1 41 75.6
Sed0006678 Sechium edule HOM05D000445 ORTHO05D000314 2.5e-09 65.1 41 75.6
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 2.5e-09 65.1 41 75.6
ClCG00G003160 Citrullus lanatus HOM05D002824 ORTHO05D007162 3.3e-09 64.7 39 79.5
HanXRQChr10g0317961 Helianthus annuus HOM05D000445 ORTHO05D000314 9.5e-09 63.2 37 78.4
Nitab4.5_0001946g0030 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.6e-08 62.4 35 82.9
Medtr0052s0190 Medicago truncatula HOM05D000445 ORTHO05D000314 3.6e-08 61.2 45 71.1
Medtr0055s0010 Medicago truncatula HOM05D000445 ORTHO05D000314 3.6e-08 61.2 45 71.1
Potri.019G028400 Populus trichocarpa HOM05D000445 ORTHO05D000314 6.2e-08 60.5 40 72.5
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 8.1e-08 60.1 34 82.4
Hund28772 Selenicereus undatus HOM05D000445 ORTHO05D000314 1.4e-07 59.3 47 68.1
Hund11350 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.8e-07 58.9 45 66.7
Gohir.D12G199050 Gossypium hirsutum HOM05D000445 ORTHO05D000314 2.4e-07 58.5 40 70.0
Gorai.008G214200 Gossypium raimondii HOM05D000445 ORTHO05D000314 2.4e-07 58.5 63 49.2
Solyc04g039780.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 9.9e-06 53.1 41 63.4


User provided reference genes

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