Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017090.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.1e-106 387.5 197 100.0
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.9e-91 339.3 196 87.8
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 1.9e-91 339.3 196 87.8
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-91 338.6 196 87.2
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 5.6e-91 337.8 196 86.7
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 8.0e-90 334.0 196 86.7
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 4.4e-88 328.2 196 83.2
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 5.8e-88 327.8 196 82.1
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 1.7e-87 326.2 196 81.1
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 2.1e-85 319.3 195 80.0
MELO3C027417.2 Cucumis melo HOM05D001750 ORTHO05D001825 3.5e-85 318.5 195 78.5
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 3.5e-85 318.5 195 79.0
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 6.6e-84 314.3 195 78.5
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 1.5e-83 313.2 195 77.9
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 1.5e-83 313.2 196 78.6
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 1.9e-83 312.8 196 78.1
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 1.9e-83 312.8 196 78.1
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 1.9e-83 312.8 196 78.1
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 5.6e-83 311.2 195 77.9
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 7.3e-83 310.8 196 77.0
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 9.5e-83 310.5 196 77.0
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-82 309.3 195 76.9
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-82 309.3 195 76.9
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-82 309.3 195 76.9
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-82 309.3 195 76.9
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 2.1e-82 309.3 195 76.9
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.6e-82 308.5 195 76.9
AL7G50350 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.4
BolSC29t60501H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.9
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.9
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.9
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.9
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 6.2e-82 307.8 195 76.9
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.3e-81 305.8 196 75.5
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.1e-81 305.4 196 75.5
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 4.0e-81 305.1 195 76.4
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 4.0e-81 305.1 195 76.4
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.4e-80 301.6 196 74.5
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 3.7e-79 298.5 195 75.4
Gohir.1Z049579 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.9e-79 298.1 193 74.1
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 3.2e-78 295.4 195 75.9
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 6.0e-77 291.2 195 74.9
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 2.3e-76 289.3 195 74.9
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 2.5e-75 285.8 196 76.0
Potri.011G084150 Populus trichocarpa HOM05D001750 ORTHO05D001825 1.7e-71 273.1 182 73.1
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 9.3e-70 267.3 198 71.2
Solyc03g013620.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.4e-64 248.4 150 86.0
Gorai.013G022800 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.0e-60 237.3 180 65.6
BolC6t36206H Brassica oleracea HOM05D001750 ORTHO05D001825 1.4e-54 216.9 156 70.5
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 1.9e-54 216.5 158 72.8
PGSC0003DMG400020529 Solanum tuberosum HOM05D000729 ORTHO05D001063 1.9e-54 216.5 164 75.6
Eucgr.B00850 Eucalyptus grandis HOM05D001750 ORTHO05D001825 2.8e-50 202.6 195 56.4
BolSC49t61138H Brassica oleracea HOM05D001750 ORTHO05D001825 1.0e-47 194.1 130 72.3
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 4.6e-45 185.3 166 62.0
Lalb_Chr07g0191711 Lupinus albus HOM05D001750 ORTHO05D001825 9.6e-43 177.6 124 70.2
Lalb_Chr16g0388561 Lupinus albus HOM05D001750 ORTHO05D001825 2.8e-42 176.0 144 63.9
Nitab4.5_0007400g0030 Nicotiana tabacum HOM05D001750 ORTHO05D001825 5.3e-41 171.8 155 64.5
Gorai.006G035300 Gossypium raimondii HOM05D001750 ORTHO05D001825 9.0e-41 171.0 127 69.3
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.6e-40 169.5 101 80.2
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.6e-40 169.5 101 80.2
Gohir.D13G020450 Gossypium hirsutum HOM05D001750 ORTHO05D001825 7.6e-40 167.9 119 68.1
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 6.5e-39 164.9 112 72.3
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.4e-38 163.7 94 81.9
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 3.0e-36 156.0 195 47.2
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 5.7e-35 151.8 86 81.4
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 4.8e-34 148.7 192 44.3
Psat0s3763g0040 Pisum sativum HOM05D001750 ORTHO05D001825 8.2e-34 147.9 82 85.4
Solyc11g021195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.1e-33 145.6 105 77.1
Thhalv10024000m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 6.5e-31 138.3 128 57.8
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 9.4e-30 134.4 88 79.5
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 6.7e-28 128.3 172 44.2
Hund04278 Selenicereus undatus HOM05D001750 ORTHO05D001825 1.4e-25 120.6 128 53.9
HanXRQChr00c0718g0577001 Helianthus annuus HOM05D001750 ORTHO05D001825 3.4e-24 115.9 109 62.4
Nitab4.5_0007104g0110 Nicotiana tabacum HOM05D001750 ORTHO05D001825 4.5e-24 115.5 112 58.0
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 1.7e-23 113.6 62 87.1
Lalb_Chr07g0191701 Lupinus albus HOM05D001750 ORTHO05D001825 8.5e-23 111.3 61 86.9
Solyc02g032320.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.9e-22 110.2 69 79.7
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.2e-22 109.0 62 82.3
Eucgr.G01321 Eucalyptus grandis HOM05D000445 ORTHO05D000314 9.4e-22 107.8 72 72.2
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 9.4e-22 107.8 63 81.0
Solyc02g011720.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-21 107.1 196 37.8
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 2.7e-21 106.3 62 82.3
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 3.3e-19 99.4 131 41.2
CAN.G8.25 Capsicum annuum HOM05D001750 ORTHO05D001825 1.3e-18 97.4 60 85.0
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb384540 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 2.0e-16 90.1 100 47.0
Gohir.D02G112150 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.6e-16 89.7 81 59.3
Gorai.008G266700 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.6e-16 89.7 51 80.4
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 2.6e-16 89.7 117 43.6
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 2.2e-15 86.7 117 41.0
Gorai.005G170400 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.2e-15 86.7 196 29.6
Gohir.D02G151844 Gossypium hirsutum HOM05D001750 ORTHO05D001825 3.8e-15 85.9 196 29.6
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 6.5e-15 85.1 103 43.7
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 6.5e-15 85.1 103 43.7
BraSC48t46283Z Brassica rapa HOM05D001750 ORTHO05D001825 6.5e-15 85.1 103 43.7
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 6.5e-15 85.1 103 43.7
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 6.5e-15 85.1 106 43.4
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 6.5e-15 85.1 131 38.9
FvH4_6g34420 Fragaria vesca HOM05D001750 ORTHO05D001825 1.5e-14 84.0 103 43.7
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 1.5e-14 84.0 103 43.7
PSO017G5352 Papaver somniferum HOM05D001750 ORTHO05D001825 1.9e-14 83.6 149 37.6
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 3.2e-14 82.8 100 44.0
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 3.2e-14 82.8 100 44.0
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 7.2e-14 81.6 100 45.0
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 7.2e-14 81.6 100 44.0
Nn117s43413 Nelumbo nucifera HOM05D001750 ORTHO05D001825 9.4e-14 81.3 106 42.5
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 1.2e-13 80.9 100 44.0
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 1.2e-13 80.9 39 92.3
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 4.7e-13 79.0 38 92.1
BolC6t36205H Brassica oleracea HOM05D001750 ORTHO05D001825 4.7e-13 79.0 38 92.1
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 8.0e-13 78.2 85 49.4
MBI06_g25391_MAGBIO Magnolia biondii HOM05D001750 ORTHO05D001825 1.0e-12 77.8 100 43.0
Nn117s43418 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-12 77.8 100 43.0
Nn1g10108 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-12 77.8 100 43.0
Nn1g10189 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-12 77.8 100 43.0
Nn1g10194 Nelumbo nucifera HOM05D001750 ORTHO05D001825 1.0e-12 77.8 100 43.0
SEGI_04456 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 1.4e-12 77.4 119 40.3
Ciclev10013962m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10013986m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10014000m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10018422m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10027639m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10027648m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Ciclev10030454m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.3e-12 76.6 38 89.5
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.9e-12 75.9 90 46.7
SEGI_05810 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 3.9e-12 75.9 108 43.5
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 2.6e-11 73.2 36 91.7
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 2.6e-11 73.2 36 91.7
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 3.3e-11 72.8 196 29.1
arahy.Tifrunner.gnm1.ann1.SXA5PB Arachis hypogaea HOM05D000445 ORTHO05D000314 5.7e-11 72.0 36 86.1
TPR.G28398 Trifolium pratense HOM05D001750 ORTHO05D001825 1.3e-10 70.9 39 84.6
Nitab4.5_0007979g0040 Nicotiana tabacum HOM05D000729 ORTHO05D002596 6.3e-10 68.6 46 73.9
GSVIVG01004972001 Vitis vinifera HOM05D001750 ORTHO05D001825 6.3e-10 68.6 36 83.3
Thhalv10023164m.g Eutrema salsugineum HOM05D001750 ORTHO05D001825 8.2e-10 68.2 32 93.8
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.4e-09 66.6 61 54.1
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.4e-09 66.6 61 54.1
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.4e-09 66.6 61 54.1
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 3.1e-09 66.2 69 49.3
Peaxi162Scf00451g00046 Petunia axillaris HOM05D001750 ORTHO05D001825 3.1e-09 66.2 59 54.2
HanXRQChr00c0328g0573591 Helianthus annuus HOM05D001750 ORTHO05D001825 1.2e-08 64.3 62 58.1
Lj2C1233T24 Lonicera japonica HOM05D001750 ORTHO05D001825 1.2e-08 64.3 61 52.5
Nitab4.5_0000593g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.6e-08 63.9 59 52.5
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 2.0e-08 63.5 71 47.9
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 4.5e-08 62.4 40 67.5
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.5e-08 62.4 71 47.9
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 4.5e-08 62.4 59 50.8
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 5.9e-08 62.0 71 47.9
Lalb_Chr02g0153701 Lupinus albus HOM05D001750 ORTHO05D001825 1.0e-07 61.2 61 50.8
SHI35586 Sapria himalayana HOM05D001750 ORTHO05D001825 2.2e-07 60.1 117 35.0
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.8e-07 59.3 36 66.7
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 4.2e-06 55.8 63 49.2
SMO053G0013 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 7.2e-06 55.1 110 34.5
Peaxi162Scf00111g00125 Petunia axillaris HOM05D000478 ORTHO05D000345 9.4e-06 54.7 44 61.4


User provided reference genes

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