Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g017085.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.8e-46 188.3 102 100.0
CAN.G1148.10 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G1314.4 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G2018.14 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G2018.6 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G3365.4 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G438.84 Capsicum annuum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
Solyc00g500022.1 Solanum lycopersicum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
Sopen07g012410 Solanum pennellii HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
PGSC0003DMG400044817 Solanum tuberosum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
PGSC0003DMG400045454 Solanum tuberosum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
PGSC0003DMG401022617 Solanum tuberosum HOM05D004570 ORTHO05D005494 2.5e-26 122.1 94 72.3
CAN.G561.9 Capsicum annuum HOM05D004570 ORTHO05D005494 1.6e-25 119.4 94 70.2
DCAR_032506 Daucus carota HOM05D004570 ORTHO05D005494 1.0e-24 116.7 77 79.2
MELO3C001309.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-24 114.8 77 77.9
MELO3C028029.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-24 114.8 77 77.9
MELO3C028120.2 Cucumis melo HOM05D004570 ORTHO05D005494 4.0e-24 114.8 77 77.9
Sed0017454 Sechium edule HOM05D004570 ORTHO05D005494 6.8e-24 114.0 77 77.9
PGR111G0035 Punica granatum HOM05D004570 ORTHO05D005494 2.6e-23 112.1 77 76.6
Nn021s41531 Nelumbo nucifera HOM05D004570 ORTHO05D005494 5.7e-23 110.9 97 66.0
Nn3g19985 Nelumbo nucifera HOM05D004570 ORTHO05D005494 5.7e-23 110.9 97 66.0
PSO548G0082 Papaver somniferum HOM05D004570 ORTHO05D005494 5.7e-23 110.9 97 66.0
RcHm_v2.0_CPg0502011 Rosa chinensis HOM05D004570 ORTHO05D005494 5.7e-23 110.9 77 75.3
Gohir.A12G229466 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
Gorai.010G129700 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr01g0004801 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr01g0020301 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr02g0041611 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr02g0044851 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr10g0283601 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr10g0284291 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr10g0289311 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr10g0318151 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr11g0326881 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQCPg0580091 Helianthus annuus HOM05D004570 ORTHO05D005494 1.3e-22 109.8 77 74.0
HanXRQChr04g0095121 Helianthus annuus HOM05D004570 ORTHO05D005494 1.7e-22 109.4 77 74.0
Gohir.A11G230402 Gossypium hirsutum HOM05D004570 ORTHO05D005494 2.2e-22 109.0 77 74.0
RcHm_v2.0_Chr6g0260411 Rosa chinensis HOM05D004570 ORTHO05D005494 2.2e-22 109.0 77 75.3
C06p23030 Brassica napus HOM05D004570 ORTHO05D005494 3.7e-22 108.2 77 72.7
Gohir.D12G107900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.7e-22 108.2 77 72.7
HanXRQChr04g0094281 Helianthus annuus HOM05D004570 ORTHO05D005494 3.7e-22 108.2 77 72.7
Gohir.A04G059000 Gossypium hirsutum HOM05D004570 ORTHO05D005494 6.3e-22 107.5 77 72.7
ATCG00650 Arabidopsis thaliana HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
C06p22960 Brassica napus HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BolSC29t60597H Brassica oleracea HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BolSC35t60657H Brassica oleracea HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BolSC46t61008H Brassica oleracea HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BraA06t25415Z Brassica rapa HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BraSC138t45566Z Brassica rapa HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BraSC25t45856Z Brassica rapa HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
BraSC58t46431Z Brassica rapa HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
CARHR282160 Cardamine hirsuta HOM05D004570 ORTHO05D005494 8.3e-22 107.1 77 71.4
TAR628G1502 Trochodendron aralioides HOM05D004570 ORTHO05D005494 1.1e-21 106.7 95 64.2
CAN.G1753.2 Capsicum annuum HOM05D004570 ORTHO05D005494 1.8e-21 105.9 94 63.8
C02p28720 Brassica napus HOM05D004570 ORTHO05D005494 2.4e-21 105.5 77 70.1
BolC2t08922H Brassica oleracea HOM05D004570 ORTHO05D005494 2.4e-21 105.5 77 70.1
BolSC47t61087H Brassica oleracea HOM05D004570 ORTHO05D005494 2.4e-21 105.5 74 71.6
BolSC49t61173H Brassica oleracea HOM05D004570 ORTHO05D005494 3.1e-21 105.1 76 69.7
AL2G21620 Arabidopsis lyrata HOM05D004570 ORTHO05D005494 4.1e-21 104.8 77 71.4
Gohir.A01G178208 Gossypium hirsutum HOM05D004570 ORTHO05D005494 3.5e-20 101.7 79 67.1
Ciclev10003202m.g Citrus clementina HOM05D004570 ORTHO05D005494 4.5e-20 101.3 77 68.8
Lalb_Chr07g0192071 Lupinus albus HOM05D004570 ORTHO05D005494 4.5e-20 101.3 88 64.8
Gohir.A09G109900 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.0e-19 100.1 77 68.8
Gohir.A01G178244 Gossypium hirsutum HOM05D004570 ORTHO05D005494 1.3e-19 99.8 79 67.1
BolC6t36198H Brassica oleracea HOM05D004570 ORTHO05D005494 1.7e-19 99.4 79 65.8
Glyma.12G232200 Glycine max HOM05D004570 ORTHO05D005494 1.7e-19 99.4 68 75.0
Gorai.001G196600 Gossypium raimondii HOM05D004570 ORTHO05D005494 2.3e-19 99.0 77 67.5
HanXRQChr00c0314g0573531 Helianthus annuus HOM05D004570 ORTHO05D005494 3.8e-19 98.2 70 74.3
HanXRQChr02g0052581 Helianthus annuus HOM05D004570 ORTHO05D005494 3.8e-19 98.2 70 74.3
Gohir.D01G101982 Gossypium hirsutum HOM05D004570 ORTHO05D005494 8.6e-19 97.1 70 72.9
Phvul.002G090511 Phaseolus vulgaris HOM05D004570 ORTHO05D005494 1.5e-18 96.3 76 63.2
Glyma.15G238900 Glycine max HOM05D004570 ORTHO05D005494 1.9e-18 95.9 98 56.1
arahy.Tifrunner.gnm1.ann1.0J98KG Arachis hypogaea HOM05D004570 ORTHO05D005494 4.3e-18 94.7 75 69.3
arahy.Tifrunner.gnm1.ann1.JZHZ2W Arachis hypogaea HOM05D004570 ORTHO05D005494 4.3e-18 94.7 75 69.3
BNapus_Darmor_BZH_scaffold_287p00190 Brassica napus HOM05D004570 ORTHO05D005494 5.6e-18 94.4 70 70.0
C02p43580 Brassica napus HOM05D004570 ORTHO05D005494 5.6e-18 94.4 70 70.0
BolSC29t60476H Brassica oleracea HOM05D004570 ORTHO05D005494 5.6e-18 94.4 70 70.0
Gorai.001G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.6e-17 92.8 70 70.0
Lj1g0020553 Lotus japonicus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 94 58.5
LjContig00318g0015790 Lotus japonicus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 94 58.5
Hund04053 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund07983 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund08573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund08807 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund20237 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund22775 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27463 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27482 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27573 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27596 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27877 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27896 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund27980 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28050 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28104 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28263 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28454 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28470 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28489 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28514 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28525 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28627 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28673 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28719 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28741 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28753 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28842 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund28891 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29139 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29177 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29360 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29465 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29622 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29704 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29708 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29718 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29725 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29808 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29832 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29833 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29856 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29864 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund29940 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30026 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30252 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30318 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30479 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30523 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Hund30577 Selenicereus undatus HOM05D004570 ORTHO05D005494 2.8e-17 92.0 65 72.3
Eucgr.E01044 Eucalyptus grandis HOM05D004570 ORTHO05D005494 1.4e-16 89.7 70 70.0
Hund15803 Selenicereus undatus HOM05D004570 ORTHO05D005494 1.8e-16 89.4 77 63.6
Zm00001eb435160 Zea mays HOM05D004570 ORTHO05D005494 1.2e-15 86.7 58 75.9
Zm00001eb437170 Zea mays HOM05D004570 ORTHO05D005494 1.2e-15 86.7 58 75.9
Lalb_Chr23g0274341 Lupinus albus HOM05D004570 ORTHO05D005494 3.4e-15 85.1 81 60.5
Os01g0523401 Oryza sativa ssp. japonica HOM05D004570 ORTHO05D005494 3.4e-15 85.1 58 74.1
Gohir.D06G113675 Gossypium hirsutum HOM05D004570 ORTHO05D005494 5.8e-15 84.3 56 78.6
Lj2P1237T61 Lonicera japonica HOM05D004570 ORTHO05D005494 7.5e-15 84.0 60 73.3
Lj2P1239T137 Lonicera japonica HOM05D004570 ORTHO05D005494 7.5e-15 84.0 60 73.3
Gohir.A04G042801 Gossypium hirsutum HOM05D004570 ORTHO05D005494 9.8e-15 83.6 60 71.7
Medtr4g051350 Medicago truncatula HOM05D004570 ORTHO05D009532 8.3e-14 80.5 83 55.4
Lalb_Chr18g0049721 Lupinus albus HOM05D004570 ORTHO05D005494 1.1e-13 80.1 54 75.9
Gorai.006G063400 Gossypium raimondii HOM05D004570 ORTHO05D005494 1.8e-13 79.3 52 78.8
CSS0008162 Camellia sinensis var. sinensis HOM05D004570 ORTHO05D005494 1.2e-12 76.6 53 75.5
GSVIVG01023557001 Vitis vinifera HOM05D000092 ORTHO05D000042 2.0e-12 75.9 48 83.3
Lalb_Chr23g0274801 Lupinus albus HOM05D004570 ORTHO05D005494 3.5e-12 75.1 56 69.6
BraSC103t45456Z Brassica rapa HOM05D004570 ORTHO05D005494 8.9e-08 60.5 81 50.6
Eucgr.A00291 Eucalyptus grandis HOM05D004570 ORTHO05D005494 2.0e-07 59.3 37 78.4
EL10Ac7g17378 Beta vulgaris HOM05D004570 ORTHO05D005494 7.5e-07 57.4 35 80.0
arahy.Tifrunner.gnm1.ann1.RCVY9V Arachis hypogaea HOM05D000540 ORTHO05D000681 1.7e-06 56.2 40 72.5


User provided reference genes

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