Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g016580.1 Solanum lycopersicum HOM05D001084 ORTHO05D049424 1.5e-25 118.6 57 100.0
Solyc01g109380.3 Solanum lycopersicum HOM05D001084 ORTHO05D001275 3.9e-21 104.0 56 89.3
Sopen01g051570 Solanum pennellii HOM05D001084 ORTHO05D001275 3.9e-21 104.0 56 89.3
PGSC0003DMG400025185 Solanum tuberosum HOM05D001084 ORTHO05D001275 8.7e-21 102.8 56 89.3
Nitab4.5_0004280g0090 Nicotiana tabacum HOM05D001084 ORTHO05D001275 9.7e-20 99.4 56 85.7
Peaxi162Scf00016g00102 Petunia axillaris HOM05D001084 ORTHO05D001275 2.2e-19 98.2 56 83.9
CAN.G322.110 Capsicum annuum HOM05D001084 ORTHO05D001275 4.8e-19 97.1 56 82.1
Nitab4.5_0012349g0020 Nicotiana tabacum HOM05D001084 ORTHO05D001275 4.8e-19 97.1 56 82.1
Oeu021899.1 Olea europaea HOM05D001084 ORTHO05D001275 2.9e-16 87.8 56 75.0
Dinv23554 Davidia involucrata HOM05D001084 ORTHO05D001275 4.2e-15 84.0 59 74.6
Cc02_g17880 Coffea canephora HOM05D001084 ORTHO05D001275 5.5e-15 83.6 56 69.6
CiPaw.06G137800 Carya illinoinensis HOM05D001084 ORTHO05D001275 2.7e-14 81.3 59 72.9
AUR62011358 Chenopodium quinoa HOM05D001084 ORTHO05D001275 3.6e-14 80.9 56 69.6
AUR62016703 Chenopodium quinoa HOM05D001084 ORTHO05D001275 3.6e-14 80.9 56 69.6
Peaxi162Scf00684g00568 Petunia axillaris HOM05D001084 ORTHO05D001275 4.6e-14 80.5 56 69.6
Ah.01g019620 Amaranthus hybridus HOM05D000626 ORTHO05D003868 7.9e-14 79.7 56 67.9
GSVIVG01031916001 Vitis vinifera HOM05D001084 ORTHO05D001275 7.9e-14 79.7 59 71.2
Dinv42091 Davidia involucrata HOM05D001084 ORTHO05D001275 1.0e-13 79.3 57 71.9
Oeu003715.1 Olea europaea HOM05D001084 ORTHO05D001275 1.0e-13 79.3 57 70.2
DCAR_022099 Daucus carota HOM05D001084 ORTHO05D001275 1.8e-13 78.6 61 65.6
Oeu003716.1 Olea europaea HOM05D001084 ORTHO05D001275 3.9e-13 77.4 57 68.4
Potri.004G150800 Populus trichocarpa HOM05D001084 ORTHO05D001275 6.7e-13 76.6 60 65.0
Manes.17G099100 Manihot esculenta HOM05D001084 ORTHO05D001275 8.8e-13 76.3 59 64.4
TWI75G0560 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 1.1e-12 75.9 60 68.3
MSTRG.16791 Avicennia marina HOM05D001084 ORTHO05D001275 1.5e-12 75.5 58 65.5
Manes.15G148300 Manihot esculenta HOM05D001084 ORTHO05D001275 1.9e-12 75.1 59 62.7
QL11p042349 Quercus lobata HOM05D001084 ORTHO05D001275 1.9e-12 75.1 59 67.8
CiPaw.05G061100 Carya illinoinensis HOM05D001084 ORTHO05D001275 2.5e-12 74.7 59 67.8
Duzib132G1258 Durio zibethinus HOM05D001084 ORTHO05D001275 2.5e-12 74.7 59 64.4
Actinidia00499 Actinidia chinensis HOM05D001084 ORTHO05D001275 3.3e-12 74.3 59 66.1
Sabra04G0100300 Salix brachista HOM05D001084 ORTHO05D001275 3.3e-12 74.3 60 61.7
Nitab4.5_0000199g0020 Nicotiana tabacum HOM05D001084 ORTHO05D049424 4.3e-12 73.9 56 66.1
EL10Ac9g21760 Beta vulgaris HOM05D001084 ORTHO05D001275 1.3e-11 72.4 57 64.9
Lj3g0009377 Lotus japonicus HOM05D001084 ORTHO05D001275 1.7e-11 72.0 59 62.7
Duzib248G0731 Durio zibethinus HOM05D001084 ORTHO05D001275 3.7e-11 70.9 59 62.7
Potri.009G112430 Populus trichocarpa HOM05D001084 ORTHO05D001275 3.7e-11 70.9 60 61.7
Potri.T125304 Populus trichocarpa HOM05D001084 ORTHO05D001275 3.7e-11 70.9 60 61.7
Sc18g0004680 Simmondsia chinensis HOM05D001084 ORTHO05D001275 3.7e-11 70.9 56 62.5
Thecc.02G122100 Theobroma cacao HOM05D001084 ORTHO05D001275 6.3e-11 70.1 59 61.0
Migut.B00265 Erythranthe guttata HOM05D001084 ORTHO05D001275 8.2e-11 69.7 60 60.0
MD05G1070600 Malus domestica HOM05D001084 ORTHO05D001275 8.2e-11 69.7 61 55.7
TAR376G0890 Trochodendron aralioides HOM05D001084 ORTHO05D001275 8.2e-11 69.7 59 62.7
Sabra09G0085800 Salix brachista HOM05D001084 ORTHO05D001275 1.1e-10 69.3 63 58.7
COL.COLO4_32460 Corchorus olitorius HOM05D001084 ORTHO05D001275 1.4e-10 68.9 59 59.3
Ciclev10030403m.g Citrus clementina HOM05D001084 ORTHO05D001275 2.4e-10 68.2 56 62.5
Glyma.07G161300 Glycine max HOM05D001084 ORTHO05D001275 2.4e-10 68.2 57 61.4
Hma1.2p1_0066F.1_g036730 Hydrangea macrophylla HOM05D001084 ORTHO05D001275 2.4e-10 68.2 56 64.3
TWI31G1269 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 2.4e-10 68.2 60 56.7
Lalb_Chr01g0002721 Lupinus albus HOM05D001084 ORTHO05D001275 3.1e-10 67.8 59 61.0
Prupe.8G103100 Prunus persica HOM05D001084 ORTHO05D001275 4.1e-10 67.4 61 55.7
TAR628G1290 Trochodendron aralioides HOM05D001084 ORTHO05D001275 4.1e-10 67.4 59 59.3
Glyma.11G120500 Glycine max HOM05D001084 ORTHO05D001275 6.9e-10 66.6 58 62.1
Medtr4g069160 Medicago truncatula HOM05D001084 ORTHO05D001275 6.9e-10 66.6 60 56.7
Glyma.12G045600 Glycine max HOM05D001084 ORTHO05D001275 9.1e-10 66.2 59 61.0
Actinidia17827 Actinidia chinensis HOM05D001084 ORTHO05D001275 1.5e-09 65.5 61 59.0
Lalb_Chr03g0025811 Lupinus albus HOM05D001084 ORTHO05D001275 1.5e-09 65.5 59 59.3
Atru.chr5.2941 Acer truncatum HOM05D001084 ORTHO05D001275 2.0e-09 65.1 56 60.7
Actinidia27911 Actinidia chinensis HOM05D001084 ORTHO05D001275 2.0e-09 65.1 61 59.0
TPR.G28054 Trifolium pratense HOM05D001084 ORTHO05D001275 2.0e-09 65.1 60 56.7
Aqoxy6G01019 Aquilegia oxysepala HOM05D001084 ORTHO05D001275 2.6e-09 64.7 57 56.1
Lj2g0019081 Lotus japonicus HOM05D001084 ORTHO05D001275 3.4e-09 64.3 55 58.2
MBI16_g34926_MAGBIO Magnolia biondii HOM05D001084 ORTHO05D001275 3.4e-09 64.3 59 57.6
Phvul.011G047500 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 3.4e-09 64.3 58 60.3
Rhsim05G0076700 Rhododendron simsii HOM05D001084 ORTHO05D001275 3.4e-09 64.3 63 57.1
arahy.Tifrunner.gnm1.ann1.850ERF Arachis hypogaea HOM05D001084 ORTHO05D001275 4.5e-09 63.9 59 55.9
arahy.Tifrunner.gnm1.ann1.NQI65D Arachis hypogaea HOM05D001084 ORTHO05D001275 4.5e-09 63.9 59 55.9
Cpa.g.sc62.111 Carica papaya HOM05D001084 ORTHO05D001275 4.5e-09 63.9 63 57.1
Ca_20848_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 4.5e-09 63.9 62 56.5
Gohir.D02G202990 Gossypium hirsutum HOM05D001084 ORTHO05D001275 4.5e-09 63.9 62 56.5
MBI16_g33267_MAGBIO Magnolia biondii HOM05D001084 ORTHO05D001275 4.5e-09 63.9 59 57.6
Psat6g097400 Pisum sativum HOM05D001084 ORTHO05D001275 4.5e-09 63.9 57 61.4
Carub.0007s0604 Capsella rubella HOM05D001084 ORTHO05D001275 5.9e-09 63.5 56 55.4
Gohir.A03G180000 Gossypium hirsutum HOM05D001084 ORTHO05D001275 7.7e-09 63.2 62 56.5
Gorai.005G228900 Gossypium raimondii HOM05D001084 ORTHO05D001275 7.7e-09 63.2 62 56.5
MBI16_g41854_MAGBIO Magnolia biondii HOM05D001084 ORTHO05D001275 7.7e-09 63.2 59 57.6
Phvul.003G010400 Phaseolus vulgaris HOM05D001084 ORTHO05D001275 7.7e-09 63.2 57 59.6
Psat7g184960 Pisum sativum HOM05D001084 ORTHO05D001275 7.7e-09 63.2 60 55.0
CANSAT25G0801 Cannabis sativa HOM05D001084 ORTHO05D001275 1.0e-08 62.8 67 52.2
Haze_02417 Corylus avellana HOM05D001084 ORTHO05D001275 1.0e-08 62.8 63 54.0
CSS0014022 Camellia sinensis var. sinensis HOM05D001084 ORTHO05D001275 1.3e-08 62.4 40 75.0
TPR.G18598 Trifolium pratense HOM05D001084 ORTHO05D001275 1.3e-08 62.4 57 59.6
VMungo1127G0164 Vigna mungo HOM05D001084 ORTHO05D001275 1.3e-08 62.4 59 57.6
Lj9P366T23 Lonicera japonica HOM05D001084 ORTHO05D001275 2.2e-08 61.6 55 61.8
Oeu021893.2 Olea europaea HOM05D001084 ORTHO05D001275 2.9e-08 61.2 56 57.1
Oeu021894.1 Olea europaea HOM05D001084 ORTHO05D001275 2.9e-08 61.2 56 57.1
Migut.O00626 Erythranthe guttata HOM05D001084 ORTHO05D001275 3.8e-08 60.8 59 54.2
HanXRQChr04g0128521 Helianthus annuus HOM05D001084 ORTHO05D001275 3.8e-08 60.8 63 57.1
PSO700G0028 Papaver somniferum HOM05D001084 ORTHO05D001275 3.8e-08 60.8 56 57.1
SalBow3G1146 Salvia bowleyana HOM05D001084 ORTHO05D001275 3.8e-08 60.8 56 57.1
vmacro02140 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 3.8e-08 60.8 57 50.9
vmacro02141 Vaccinium macrocarpon HOM05D001084 ORTHO05D001275 3.8e-08 60.8 57 50.9
Medtr1g034480 Medicago truncatula HOM05D001084 ORTHO05D001275 5.0e-08 60.5 56 57.1
Nn1g05097 Nelumbo nucifera HOM05D001084 ORTHO05D001275 5.0e-08 60.5 59 54.2
TWI79G1335 Tripterygium wilfordii HOM05D001084 ORTHO05D001275 5.0e-08 60.5 60 58.3
TAR628G0219 Trochodendron aralioides HOM05D001084 ORTHO05D001275 5.0e-08 60.5 59 54.2
TAR628G1472 Trochodendron aralioides HOM05D001084 ORTHO05D001275 5.0e-08 60.5 59 54.2
VMungo1215G1120 Vigna mungo HOM05D001084 ORTHO05D001275 5.0e-08 60.5 57 56.1
ECA236G2604 Erigeron canadensis HOM05D001084 ORTHO05D001275 6.5e-08 60.1 67 52.2
Thhalv10025525m.g Eutrema salsugineum HOM05D001084 ORTHO05D001275 6.5e-08 60.1 58 55.2
FvH4_2g08180 Fragaria vesca HOM05D001084 ORTHO05D001275 6.5e-08 60.1 61 57.4
FAN20G0697 Fragaria x ananassa HOM05D001084 ORTHO05D001275 6.5e-08 60.1 61 57.4
Rhsim11G0173400 Rhododendron simsii HOM05D001084 ORTHO05D001275 6.5e-08 60.1 65 50.8
RcHm_v2.0_Chr6g0262961 Rosa chinensis HOM05D001084 ORTHO05D001275 8.5e-08 59.7 61 57.4
BcaC01g00914 Brassica carinata HOM05D001084 ORTHO05D001275 1.1e-07 59.3 58 55.2
C03p85890 Brassica napus HOM05D001084 ORTHO05D001275 1.1e-07 59.3 58 55.2
BolC3t20879H Brassica oleracea HOM05D001084 ORTHO05D001275 1.1e-07 59.3 58 55.2
FAN15G1788 Fragaria x ananassa HOM05D001084 ORTHO05D001275 1.1e-07 59.3 61 55.7
FAN24G0963 Fragaria x ananassa HOM05D001084 ORTHO05D001275 1.1e-07 59.3 61 55.7
MBI16_g33269_MAGBIO Magnolia biondii HOM05D001084 ORTHO05D001275 1.1e-07 59.3 59 54.2
Nn5g29497 Nelumbo nucifera HOM05D001084 ORTHO05D001275 1.4e-07 58.9 59 52.5
PSO170G6266 Papaver somniferum HOM05D001084 ORTHO05D001275 1.4e-07 58.9 56 55.4
Aqoxy5G01705 Aquilegia oxysepala HOM05D001084 ORTHO05D001275 4.2e-07 57.4 59 47.5
A08p16940 Brassica napus HOM05D001084 ORTHO05D001275 4.2e-07 57.4 58 53.4
BraA08t33656Z Brassica rapa HOM05D001084 ORTHO05D001275 4.2e-07 57.4 58 53.4
Aa31LG2G16200 Aethionema arabicum HOM05D001084 ORTHO05D001275 5.5e-07 57.0 56 53.6
Ca_12488_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 5.5e-07 57.0 58 55.2
Ca_12493_v3 Cicer arietinum L. HOM05D001084 ORTHO05D001275 5.5e-07 57.0 58 55.2
MELO3C012570.2 Cucumis melo HOM05D001084 ORTHO05D001275 5.5e-07 57.0 57 50.9
Gohir.A13G048400 Gossypium hirsutum HOM05D001084 ORTHO05D001275 5.5e-07 57.0 72 45.8
MD10G1081600 Malus domestica HOM05D001084 ORTHO05D001275 5.5e-07 57.0 56 55.4
AL7G16950 Arabidopsis lyrata HOM05D001084 ORTHO05D001275 7.2e-07 56.6 56 55.4
BcaNung06126 Brassica carinata HOM05D001084 ORTHO05D001275 7.2e-07 56.6 58 51.7
A03p62830 Brassica napus HOM05D001084 ORTHO05D001275 7.2e-07 56.6 58 51.7
C07p60520 Brassica napus HOM05D001084 ORTHO05D001275 7.2e-07 56.6 58 51.7
BolC7t46484H Brassica oleracea HOM05D001084 ORTHO05D001275 7.2e-07 56.6 58 51.7
BraA03t15359Z Brassica rapa HOM05D001084 ORTHO05D001275 7.2e-07 56.6 58 51.7
CARHR242460 Cardamine hirsuta HOM05D001084 ORTHO05D001275 7.2e-07 56.6 56 57.1
Gohir.D13G046800 Gossypium hirsutum HOM05D001084 ORTHO05D001275 7.2e-07 56.6 75 44.0
Gorai.013G052500 Gossypium raimondii HOM05D001084 ORTHO05D001275 7.2e-07 56.6 75 44.0
Lsat_1_v5_gn_7_89780 Lactuca sativa HOM05D001084 ORTHO05D001275 7.2e-07 56.6 64 50.0
ClCG02G005280 Citrullus lanatus HOM05D001084 ORTHO05D001275 9.4e-07 56.2 57 50.9
CsaV3_7G023240 Cucumis sativus L. HOM05D001084 ORTHO05D001275 9.4e-07 56.2 57 50.9
AT4G34320 Arabidopsis thaliana HOM05D001084 ORTHO05D001275 1.2e-06 55.8 56 55.4
MSTRG.5390 Avicennia marina HOM05D001084 ORTHO05D001275 1.2e-06 55.8 58 55.2
Lalb_Chr17g0338191 Lupinus albus HOM05D001084 ORTHO05D001275 1.2e-06 55.8 59 50.8
Sabra07G0027100 Salix brachista HOM05D001084 ORTHO05D001275 2.7e-06 54.7 61 49.2
ATR0733G149 Amborella trichopoda HOM05D001084 ORTHO05D001275 3.6e-06 54.3 59 52.5
Potri.007G031200 Populus trichocarpa HOM05D001084 ORTHO05D001275 7.9e-06 53.1 61 47.5


User provided reference genes

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