Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g014710.1 Solanum lycopersicum HOM05D000633 ORTHO05D000477 2.4e-43 178.3 83 100.0
Solyc03g122300.3 Solanum lycopersicum HOM05D000633 ORTHO05D000477 1.1e-19 99.8 110 54.5
PGSC0003DMG400022897 Solanum tuberosum HOM05D000633 ORTHO05D000477 1.4e-19 99.4 110 53.6
Sopen03g041030 Solanum pennellii HOM05D000633 ORTHO05D000477 3.1e-19 98.2 110 53.6
CAN.G862.49 Capsicum annuum HOM05D000633 ORTHO05D000477 8.5e-17 90.1 110 50.0
Solyc03g078050.2 Solanum lycopersicum HOM05D000633 ORTHO05D000477 8.5e-17 90.1 67 68.7
Peaxi162Scf00038g00204 Petunia axillaris HOM05D000633 ORTHO05D000477 5.5e-16 87.4 108 49.1
Nitab4.5_0005225g0010 Nicotiana tabacum HOM05D000633 ORTHO05D000477 7.2e-16 87.0 111 47.7
Nitab4.5_0002898g0080 Nicotiana tabacum HOM05D000633 ORTHO05D000477 1.6e-15 85.9 111 46.8
PGSC0003DMG400004892 Solanum tuberosum HOM05D000633 ORTHO05D000477 1.0e-14 83.2 110 45.5
SalBow6G0206 Salvia bowleyana HOM05D000633 ORTHO05D000477 1.8e-14 82.4 106 45.3
SalBow6G3297 Salvia bowleyana HOM05D000633 ORTHO05D000477 1.8e-14 82.4 106 45.3
Solyc06g062960.3 Solanum lycopersicum HOM05D000633 ORTHO05D000477 5.2e-14 80.9 106 45.3
Sopen06g022410 Solanum pennellii HOM05D000633 ORTHO05D000477 5.2e-14 80.9 106 45.3
Nitab4.5_0002716g0020 Nicotiana tabacum HOM05D000633 ORTHO05D000477 6.8e-14 80.5 110 45.5
Oeu000397.1 Olea europaea HOM05D000633 ORTHO05D000477 1.2e-13 79.7 107 43.0
CAN.G825.3 Capsicum annuum HOM05D000633 ORTHO05D000477 4.4e-13 77.8 106 44.3
Peaxi162Scf00207g01421 Petunia axillaris HOM05D000633 ORTHO05D000477 4.4e-13 77.8 102 46.1
MSTRG.10940 Avicennia marina HOM05D000633 ORTHO05D000477 9.8e-13 76.6 105 45.7
MSTRG.22540 Avicennia marina HOM05D000633 ORTHO05D000477 9.8e-13 76.6 103 44.7
SGA_v2.0_scaffold71G23898 Striga asiatica HOM05D000633 ORTHO05D000477 1.3e-12 76.3 108 42.6
CSS0005178 Camellia sinensis var. sinensis HOM05D000633 ORTHO05D000477 1.7e-12 75.9 110 42.7
Actinidia26019 Actinidia chinensis HOM05D000633 ORTHO05D000477 2.2e-12 75.5 110 41.8
CANSAT56G1211 Cannabis sativa HOM05D000633 ORTHO05D000477 3.7e-12 74.7 103 43.7
Duzib160G0745 Durio zibethinus HOM05D000633 ORTHO05D000477 3.7e-12 74.7 108 41.7
Migut.I01091 Erythranthe guttata HOM05D000633 ORTHO05D000477 3.7e-12 74.7 102 44.1
HanXRQChr09g0276801 Helianthus annuus HOM05D000633 ORTHO05D000477 3.7e-12 74.7 109 41.3
GSVIVG01016733001 Vitis vinifera HOM05D000633 ORTHO05D000477 3.7e-12 74.7 105 42.9
Actinidia24720 Actinidia chinensis HOM05D000633 ORTHO05D004685 4.8e-12 74.3 110 41.8
Dinv20418 Davidia involucrata HOM05D000633 ORTHO05D000477 4.8e-12 74.3 102 44.1
Lsat_1_v5_gn_4_94381 Lactuca sativa HOM05D000633 ORTHO05D000477 4.8e-12 74.3 110 40.9
SGA_v2.0_scaffold122G33325 Striga asiatica HOM05D000633 ORTHO05D000477 4.8e-12 74.3 107 43.0
Duzib235G0787 Durio zibethinus HOM05D000633 ORTHO05D000477 6.3e-12 73.9 108 41.7
Oeu043639.1 Olea europaea HOM05D000633 ORTHO05D000477 6.3e-12 73.9 110 42.7
Thecc.06G122700 Theobroma cacao HOM05D000633 ORTHO05D000477 6.3e-12 73.9 108 41.7
Manes.11G017400 Manihot esculenta HOM05D000633 ORTHO05D000477 1.1e-11 73.2 110 40.0
Potri.001G166900 Populus trichocarpa HOM05D000633 ORTHO05D000477 1.4e-11 72.8 109 42.2
Dinv37856 Davidia involucrata HOM05D000633 ORTHO05D000477 1.8e-11 72.4 109 41.3
Actinidia21795 Actinidia chinensis HOM05D000633 ORTHO05D000477 2.4e-11 72.0 118 39.8
Hma1.2p1_0686F.1_g203325 Hydrangea macrophylla HOM05D000633 ORTHO05D000477 2.4e-11 72.0 110 41.8
Hma1.2p1_2485F.1_g323090 Hydrangea macrophylla HOM05D000633 ORTHO05D000477 2.4e-11 72.0 110 41.8
ClCG07G014550 Citrullus lanatus HOM05D000633 ORTHO05D000477 3.1e-11 71.6 109 41.3
Atru.chr1.4040 Acer truncatum HOM05D000633 ORTHO05D000477 4.1e-11 71.2 108 44.4
Cc00_g30810 Coffea canephora HOM05D000633 ORTHO05D000477 5.4e-11 70.9 111 42.3
Sabra01G0126400 Salix brachista HOM05D000633 ORTHO05D000477 5.4e-11 70.9 108 41.7
Migut.O00961 Erythranthe guttata HOM05D000633 ORTHO05D000477 7.0e-11 70.5 110 42.7
Lsat_1_v5_gn_1_38421 Lactuca sativa HOM05D000633 ORTHO05D000477 7.0e-11 70.5 110 40.9
Prupe.3G038900 Prunus persica HOM05D000633 ORTHO05D000477 7.0e-11 70.5 109 38.5
TWI59G0040 Tripterygium wilfordii HOM05D000633 ORTHO05D000477 7.0e-11 70.5 100 41.0
Duzib192G0234 Durio zibethinus HOM05D000633 ORTHO05D000477 2.0e-10 68.9 108 42.6
Gohir.D10G057400 Gossypium hirsutum HOM05D000633 ORTHO05D000477 2.0e-10 68.9 101 40.6
Gorai.011G061500 Gossypium raimondii HOM05D000633 ORTHO05D000477 2.0e-10 68.9 101 40.6
Hma1.2p1_0229F.1_g096650 Hydrangea macrophylla HOM05D000633 ORTHO05D000477 2.0e-10 68.9 108 40.7
Hma1.2p1_0291F.1_g114910 Hydrangea macrophylla HOM05D000633 ORTHO05D000477 2.0e-10 68.9 108 40.7
Rhsim08G0240300 Rhododendron simsii HOM05D000633 ORTHO05D000477 2.0e-10 68.9 103 40.8
Psat4g168360 Pisum sativum HOM05D000633 ORTHO05D000477 2.7e-10 68.6 58 60.3
MBI13_g35421_MAGBIO Magnolia biondii HOM05D000633 ORTHO05D000477 3.5e-10 68.2 100 41.0
SGA_v2.0_scaffold4G02068 Striga asiatica HOM05D000633 ORTHO05D000477 3.5e-10 68.2 103 41.7
THA.LOC104812255 Tarenaya hassleriana HOM05D000633 ORTHO05D000477 3.5e-10 68.2 103 39.8
MELO3C022669.2 Cucumis melo HOM05D000633 ORTHO05D000477 4.5e-10 67.8 103 40.8
Nn8g38613 Nelumbo nucifera HOM05D000633 ORTHO05D000477 4.5e-10 67.8 101 42.6
CsaV3_3G030720 Cucumis sativus L. HOM05D000633 ORTHO05D000477 5.9e-10 67.4 103 39.8
MD17G1165800 Malus domestica HOM05D000633 ORTHO05D000477 5.9e-10 67.4 111 39.6
Manes.04G146400 Manihot esculenta HOM05D000633 ORTHO05D000477 7.7e-10 67.0 106 40.6
Ciclev10026666m.g Citrus clementina HOM05D000633 ORTHO05D000477 1.3e-09 66.2 108 39.8
Gohir.A10G055500 Gossypium hirsutum HOM05D000633 ORTHO05D000477 1.3e-09 66.2 101 38.6
QL05p003972 Quercus lobata HOM05D000633 ORTHO05D000477 1.3e-09 66.2 102 40.2
Sabra03G0039700 Salix brachista HOM05D000633 ORTHO05D000477 1.3e-09 66.2 102 42.2
AL2G32200 Arabidopsis lyrata HOM05D000633 ORTHO05D000477 1.7e-09 65.9 102 41.2
CiPaw.02G134800 Carya illinoinensis HOM05D000633 ORTHO05D000477 1.7e-09 65.9 102 40.2
MELO3C024344.2 Cucumis melo HOM05D000633 ORTHO05D000477 1.7e-09 65.9 111 38.7
CsaV3_7G034350 Cucumis sativus L. HOM05D000633 ORTHO05D000477 1.7e-09 65.9 111 38.7
MD09G1180300 Malus domestica HOM05D000633 ORTHO05D000477 1.7e-09 65.9 111 39.6
Potri.003G067800 Populus trichocarpa HOM05D000633 ORTHO05D000477 1.7e-09 65.9 102 40.2
EL10Ac7g16432 Beta vulgaris HOM05D000633 ORTHO05D000477 2.2e-09 65.5 112 39.3
Cfa003521 Carpinus fangiana HOM05D000633 ORTHO05D000477 2.2e-09 65.5 101 40.6
AUR62001456 Chenopodium quinoa HOM05D000633 ORTHO05D000477 2.9e-09 65.1 111 40.5
AUR62009910 Chenopodium quinoa HOM05D000633 ORTHO05D000477 2.9e-09 65.1 111 40.5
HanXRQChr17g0541911 Helianthus annuus HOM05D000633 ORTHO05D000477 2.9e-09 65.1 113 40.7
Sp5g27590 Schrenkiella parvula HOM05D000633 ORTHO05D000477 2.9e-09 65.1 109 38.5
Phvul.010G128400 Phaseolus vulgaris HOM05D000633 ORTHO05D000477 3.8e-09 64.7 97 40.2
VMungo0331G1059 Vigna mungo HOM05D000633 ORTHO05D000477 3.8e-09 64.7 97 40.2
AT1G72510 Arabidopsis thaliana HOM05D000633 ORTHO05D000477 5.0e-09 64.3 102 39.2
ClCG09G001070 Citrullus lanatus HOM05D000633 ORTHO05D000477 5.0e-09 64.3 110 37.3
Eucgr.F04401 Eucalyptus grandis HOM05D000633 ORTHO05D000477 5.0e-09 64.3 109 40.4
Sc12g0010700 Simmondsia chinensis HOM05D000633 ORTHO05D000477 5.0e-09 64.3 111 38.7
TWI14G1215 Tripterygium wilfordii HOM05D000633 ORTHO05D000477 5.0e-09 64.3 101 37.6
HanXRQChr10g0312451 Helianthus annuus HOM05D000633 ORTHO05D000477 6.5e-09 63.9 111 39.6
Aa31LG4G2840 Aethionema arabicum HOM05D000633 ORTHO05D000477 8.5e-09 63.5 109 37.6
Haze_16047 Corylus avellana HOM05D000633 ORTHO05D000477 8.5e-09 63.5 101 39.6
Thhalv10019228m.g Eutrema salsugineum HOM05D000633 ORTHO05D000477 8.5e-09 63.5 103 39.8
Glyma.07G040400 Glycine max HOM05D000633 ORTHO05D000477 8.5e-09 63.5 97 39.2
CARHR065450 Cardamine hirsuta HOM05D000633 ORTHO05D000477 1.1e-08 63.2 102 39.2
Lalb_Chr17g0343541 Lupinus albus HOM05D000633 ORTHO05D000477 1.1e-08 63.2 101 37.6
GSVIVG01035488001 Vitis vinifera HOM05D000633 ORTHO05D000477 1.1e-08 63.2 99 37.4
Glyma.16G009000 Glycine max HOM05D000633 ORTHO05D000477 1.5e-08 62.8 98 38.8
Sed0007737 Sechium edule HOM05D000633 ORTHO05D000477 1.5e-08 62.8 107 39.3
BcaB03g15003 Brassica carinata HOM05D000633 ORTHO05D000477 1.9e-08 62.4 103 38.8
CiPaw.01G217100 Carya illinoinensis HOM05D000633 ORTHO05D000477 2.5e-08 62.0 104 41.3
Ca_23397_v3 Cicer arietinum L. HOM05D000633 ORTHO05D000477 2.5e-08 62.0 108 38.0
Lj5C34T4 Lonicera japonica HOM05D000633 ORTHO05D000477 2.5e-08 62.0 103 34.0
PGR119G1770 Punica granatum HOM05D000633 ORTHO05D000477 3.2e-08 61.6 119 38.7
Ah.08g216990 Amaranthus hybridus HOM05D000633 ORTHO05D000477 4.2e-08 61.2 114 38.6
Ah.15g095220 Amaranthus hybridus HOM05D000633 ORTHO05D000477 4.2e-08 61.2 107 39.3
Aqoxy7G01025 Aquilegia oxysepala HOM05D000633 ORTHO05D000477 4.2e-08 61.2 103 35.9
BolC2t09057H Brassica oleracea HOM05D000633 ORTHO05D000477 4.2e-08 61.2 109 36.7
Lj3g0021496 Lotus japonicus HOM05D000633 ORTHO05D000477 4.2e-08 61.2 108 38.0
BcaB05g24760 Brassica carinata HOM05D000633 ORTHO05D000477 5.5e-08 60.8 103 38.8
BcaC03g15396 Brassica carinata HOM05D000633 ORTHO05D000477 5.5e-08 60.8 109 36.7
A02p18050 Brassica napus HOM05D000633 ORTHO05D000477 5.5e-08 60.8 103 38.8
C02p30080 Brassica napus HOM05D000633 ORTHO05D000477 5.5e-08 60.8 109 36.7
BraA02t06852Z Brassica rapa HOM05D000633 ORTHO05D000477 5.5e-08 60.8 103 38.8
ECA247G1216 Erigeron canadensis HOM05D000633 ORTHO05D000477 5.5e-08 60.8 112 38.4
TAR626G0664 Trochodendron aralioides HOM05D000633 ORTHO05D000477 7.2e-08 60.5 102 37.3
unitig_52.g17108 Utricularia gibba HOM05D000633 ORTHO05D000477 7.2e-08 60.5 99 38.4
Carub.0002s1937 Capsella rubella HOM05D000633 ORTHO05D000477 9.4e-08 60.1 103 37.9
CDE05G3176 Ceratophyllum demersum HOM05D000633 ORTHO05D000477 9.4e-08 60.1 100 36.0
A07p38720 Brassica napus HOM05D000633 ORTHO05D000477 1.6e-07 59.3 109 36.7
BraA07t31425Z Brassica rapa HOM05D000633 ORTHO05D000477 1.6e-07 59.3 109 36.7
SalBow7G3591 Salvia bowleyana HOM05D000633 ORTHO05D000477 1.6e-07 59.3 99 38.4
RcHm_v2.0_Chr2g0146181 Rosa chinensis HOM05D000633 ORTHO05D000477 2.1e-07 58.9 101 36.6
BcaC08g46703 Brassica carinata HOM05D000633 ORTHO05D000477 2.7e-07 58.5 102 38.2
C06p46880 Brassica napus HOM05D000633 ORTHO05D000477 2.7e-07 58.5 102 38.2
BolC6t39729H Brassica oleracea HOM05D000633 ORTHO05D000477 2.7e-07 58.5 102 38.2
DCAR_007650 Daucus carota HOM05D000633 ORTHO05D000477 2.7e-07 58.5 98 37.8
Duzib168G0476 Durio zibethinus HOM05D000633 ORTHO05D000477 8.0e-07 57.0 109 33.9
Cpa.g.c43223 Carica papaya HOM05D000633 ORTHO05D000477 1.0e-06 56.6 93 38.7
CDE05G0408 Ceratophyllum demersum HOM05D000633 ORTHO05D000477 1.0e-06 56.6 100 35.0
Lalb_Chr10g0101431 Lupinus albus HOM05D000633 ORTHO05D000477 1.0e-06 56.6 113 36.3
MSTRG.9525 Avicennia marina HOM05D000633 ORTHO05D000477 1.4e-06 56.2 102 37.3
AT2G09970 Arabidopsis thaliana HOM05D000633 ORTHO05D000477 1.8e-06 55.8 103 35.9
FAN05G1956 Fragaria x ananassa HOM05D000633 ORTHO05D000477 2.3e-06 55.5 101 36.6
Hund31029 Selenicereus undatus HOM05D000633 ORTHO05D000477 2.3e-06 55.5 125 35.2
DCAR_026419 Daucus carota HOM05D001055 ORTHO05D000867 3.0e-06 55.1 97 36.1
FvH4_6g35020 Fragaria vesca HOM05D000633 ORTHO05D000477 3.0e-06 55.1 101 36.6
FAN02G2321 Fragaria x ananassa HOM05D000633 ORTHO05D000477 3.0e-06 55.1 101 36.6
FAN09G0441 Fragaria x ananassa HOM05D000633 ORTHO05D000477 3.0e-06 55.1 101 36.6
FAN14G2291 Fragaria x ananassa HOM05D000633 ORTHO05D000477 3.0e-06 55.1 101 36.6
ECA234G0965 Erigeron canadensis HOM05D000633 ORTHO05D000477 4.0e-06 54.7 114 36.0
Lsat_1_v5_gn_5_134981 Lactuca sativa HOM05D000633 ORTHO05D000477 4.0e-06 54.7 34 76.5
Medtr8g021190 Medicago truncatula HOM05D000633 ORTHO05D000477 4.0e-06 54.7 93 37.6
TPR.G16735 Trifolium pratense HOM05D000633 ORTHO05D000477 4.0e-06 54.7 93 37.6
HPP92_013022 Vanilla planifolia HOM05D000633 ORTHO05D000477 4.0e-06 54.7 109 35.8
MELO3C032302.2 Cucumis melo HOM05D000633 ORTHO05D000477 5.2e-06 54.3 99 35.4
CsaV3_4G036150 Cucumis sativus L. HOM05D000633 ORTHO05D000477 5.2e-06 54.3 99 35.4
ClCG05G015860 Citrullus lanatus HOM05D000633 ORTHO05D000477 6.8e-06 53.9 99 34.3
PGSC0003DMG400012993 Solanum tuberosum HOM05D000633 ORTHO05D000477 6.8e-06 53.9 114 34.2
Nitab4.5_0004787g0010 Nicotiana tabacum HOM05D000633 ORTHO05D000477 8.8e-06 53.5 105 34.3


User provided reference genes

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