Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g011358.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 1.1e-93 346.7 176 100.0
CAN.G7593.1 Capsicum annuum HOM05D000002 ORTHO05D000001 1.3e-22 110.5 127 49.6
CAN.G1464.3 Capsicum annuum HOM05D000002 ORTHO05D000001 2.2e-22 109.8 116 52.6
Nn8g39601 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.3e-18 95.9 173 37.6
Nn2g11548 Nelumbo nucifera HOM05D000002 ORTHO05D000001 3.6e-17 92.4 173 37.6
Nn1g00402 Nelumbo nucifera HOM05D000002 ORTHO05D000001 8.1e-17 91.3 173 37.0
TAR084G0004 Trochodendron aralioides HOM05D001435 ORTHO05D001304 3.1e-16 89.4 170 34.1
Ah.03g139420 Amaranthus hybridus HOM05D000002 ORTHO05D000001 9.0e-16 87.8 172 37.2
Rhsim02G0101600 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.0e-15 86.7 183 35.0
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 5.8e-15 85.1 179 35.8
TAR192G0004 Trochodendron aralioides HOM05D000002 ORTHO05D000001 7.6e-15 84.7 171 35.7
Rhsim05G0062600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.7e-14 83.6 139 40.3
Atru.chr2.2580 Acer truncatum HOM05D000002 ORTHO05D000001 4.9e-14 82.0 178 34.3
Hma1.2p1_0672F.1_g201120 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 6.4e-14 81.6 176 34.7
CSS0001737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.4e-14 81.3 191 33.0
CSS0039053 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.4e-13 80.5 173 35.3
ECA232G0227 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-13 80.1 168 35.1
Sopen02g009930 Solanum pennellii HOM05D000002 ORTHO05D000001 2.4e-13 79.7 180 32.8
CSS0013254 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-13 78.6 191 32.5
CSS0034935 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 5.4e-13 78.6 141 36.9
HanXRQChr15g0476521 Helianthus annuus HOM05D000002 ORTHO05D000001 5.4e-13 78.6 173 34.1
C08p15500 Brassica napus HOM05D000002 ORTHO05D000075 7.1e-13 78.2 174 36.8
CSS0005122 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.1e-13 78.2 191 32.5
CSS0015658 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.3e-13 77.8 191 32.5
CSS0025925 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.3e-13 77.8 187 32.1
CSS0044431 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.3e-13 77.8 163 32.5
HanXRQChr03g0093111 Helianthus annuus HOM05D000002 ORTHO05D000001 9.3e-13 77.8 174 32.2
CSS0017698 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-12 76.6 187 31.6
CSS0041837 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-12 76.6 187 31.6
CSS0042232 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.1e-12 76.6 173 34.1
ECA246G0311 Erigeron canadensis HOM05D002833 ORTHO05D003210 2.1e-12 76.6 173 33.5
CSS0041353 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.7e-12 76.3 187 32.1
Hma1.2p1_1270F.1_g271670 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.7e-12 76.3 172 34.9
CSS0020834 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.6e-12 75.5 194 31.4
Hma1.2p1_2159F.1_g315520 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-11 73.9 145 35.2
SHI32040 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-11 73.9 178 30.3
PSO675G0904 Papaver somniferum HOM05D002833 ORTHO05D003210 1.8e-11 73.6 139 32.4
Sopen00g009240 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-11 73.2 176 33.5
Sopen10g028380 Solanum pennellii HOM05D000002 ORTHO05D000001 2.3e-11 73.2 176 33.5
MD12G1020900 Malus domestica HOM05D000103 ORTHO05D000001 3.0e-11 72.8 178 29.2
TPR.G3798 Trifolium pratense HOM05D000002 ORTHO05D000001 3.9e-11 72.4 176 31.2
MD00G1084700 Malus domestica HOM05D000002 ORTHO05D000001 5.1e-11 72.0 179 31.8
Actinidia07495 Actinidia chinensis HOM05D000002 ORTHO05D000001 6.7e-11 71.6 146 34.9
CSS0004328 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-11 71.6 150 33.3
CSS0011332 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 6.7e-11 71.6 152 34.9
QL08p061042 Quercus lobata HOM05D000002 ORTHO05D000001 6.7e-11 71.6 168 31.0
Solyc05g015654.1 Solanum lycopersicum HOM05D000002 ORTHO05D000001 6.7e-11 71.6 184 32.1
CSS0022091 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.7e-11 71.2 150 32.7
HanXRQChr09g0266471 Helianthus annuus HOM05D000002 ORTHO05D000001 8.7e-11 71.2 161 29.2
Hma1.2p1_2372F.1_g320810 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.7e-11 71.2 145 34.5
Hma1.2p1_2923F.1_g330370 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.7e-11 71.2 145 34.5
Hma1.2p1_3198F.1_g333876 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 8.7e-11 71.2 145 34.5
Rhsim05G0026100 Rhododendron simsii HOM05D000002 ORTHO05D000001 8.7e-11 71.2 175 30.9
Actinidia03788 Actinidia chinensis HOM05D000002 ORTHO05D000001 1.1e-10 70.9 92 46.7
CSS0032534 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-10 70.9 186 31.7
Hma1.2p1_0706F.1_g207010 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.5e-10 70.5 154 33.8
ECA248G2283 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.9e-10 70.1 158 31.6
Sopen01g025080 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen02g037750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen07g006410 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen07g029680 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen07g031580 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen08g004430 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen10g024730 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
Sopen12g022570 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-10 70.1 176 33.0
CSS0011046 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-10 69.7 93 40.9
Rhsim05G0182900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.5e-10 69.7 173 34.7
MD11G1197500 Malus domestica HOM05D000002 ORTHO05D000001 3.3e-10 69.3 177 29.9
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.3e-10 68.9 157 32.5
SHI11018 Sapria himalayana HOM05D004993 ORTHO05D000001 4.3e-10 68.9 151 31.1
Sopen01g017610 Solanum pennellii HOM05D000002 ORTHO05D009932 4.3e-10 68.9 184 32.1
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.6e-10 68.6 168 31.5
MD13G1050200 Malus domestica HOM05D000002 ORTHO05D000001 5.6e-10 68.6 184 31.5
Potri.004G125150 Populus trichocarpa HOM05D000002 ORTHO05D000001 5.6e-10 68.6 91 39.6
CSS0012998 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-10 68.2 186 31.2
CSS0038771 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.4e-10 68.2 150 32.7
PSO384G3772 Papaver somniferum HOM05D000002 ORTHO05D000001 7.4e-10 68.2 159 34.0
RcHm_v2.0_Chr1g0313671 Rosa chinensis HOM05D000002 ORTHO05D017145 7.4e-10 68.2 176 30.1
RcHm_v2.0_Chr3g0465981 Rosa chinensis HOM05D000002 ORTHO05D000001 9.6e-10 67.8 184 29.9
Rhsim02G0046600 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.6e-09 67.0 138 34.8
ECA238G0436 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.1e-09 66.6 159 30.2
Hma1.2p1_1397F.1_g280780 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.1e-09 66.6 93 40.9
Manes.11G102501 Manihot esculenta HOM05D000002 ORTHO05D000001 2.8e-09 66.2 143 35.0
ClCG01G016080 Citrullus lanatus HOM05D000002 ORTHO05D000001 3.7e-09 65.9 202 27.7
ECA240G2105 Erigeron canadensis HOM05D001392 ORTHO05D003370 3.7e-09 65.9 159 32.7
MD14G1225200 Malus domestica HOM05D000002 ORTHO05D000001 3.7e-09 65.9 182 31.9
HanXRQChr15g0467541 Helianthus annuus HOM05D000002 ORTHO05D000001 4.8e-09 65.5 152 31.6
Manes.18G058850 Manihot esculenta HOM05D000002 ORTHO05D000001 4.8e-09 65.5 143 35.0
CSS0000236 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-09 64.7 171 31.0
CSS0042540 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 8.1e-09 64.7 171 31.0
HanXRQChr16g0515541 Helianthus annuus HOM05D000002 ORTHO05D000001 8.1e-09 64.7 181 29.8
MD12G1185900 Malus domestica HOM05D000002 ORTHO05D000001 8.1e-09 64.7 180 29.4
Atru.chr6.1164 Acer truncatum HOM05D000002 ORTHO05D000001 1.1e-08 64.3 180 30.6
CSS0033930 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-08 64.3 153 31.4
CSS0043651 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-08 64.3 153 31.4
CSS0043941 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-08 64.3 153 31.4
CSS0046407 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 1.1e-08 64.3 171 30.4
ECA233G4547 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-08 64.3 170 28.2
MD12G1052500 Malus domestica HOM05D000002 ORTHO05D000001 1.1e-08 64.3 175 30.3
ECA232G4656 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.4e-08 63.9 163 28.8
ECA236G2082 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.4e-08 63.9 133 31.6
Psat4g220640 Pisum sativum HOM05D018073 ORTHO05D000001 1.4e-08 63.9 131 35.1
Manes.02G215505 Manihot esculenta HOM05D000002 ORTHO05D000001 1.8e-08 63.5 127 33.9
Psat5g198840 Pisum sativum HOM05D000002 ORTHO05D000001 1.8e-08 63.5 127 35.4
Sp3g30840 Schrenkiella parvula HOM05D002833 ORTHO05D003210 1.8e-08 63.5 177 28.2
Sed0021821 Sechium edule HOM05D000002 ORTHO05D000001 1.8e-08 63.5 197 29.9
MD09G1100700 Malus domestica HOM05D000002 ORTHO05D000001 2.4e-08 63.2 188 29.8
SHI20150 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-08 63.2 163 31.9
ECA234G0762 Erigeron canadensis HOM05D000002 ORTHO05D000001 3.1e-08 62.8 171 31.6
RcHm_v2.0_Chr1g0326341 Rosa chinensis HOM05D000002 ORTHO05D000001 3.1e-08 62.8 193 30.6
TPR.G29769 Trifolium pratense HOM05D000002 ORTHO05D000001 3.1e-08 62.8 161 34.2
ECA238G2751 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.3e-08 62.0 119 37.0
CAN.G624.9 Capsicum annuum HOM05D011121 ORTHO05D018873 6.9e-08 61.6 108 37.0
Gohir.A07G189950 Gossypium hirsutum HOM05D017795 ORTHO05D000001 6.9e-08 61.6 177 32.2
Hma1.2p1_0616F.1_g189980 Hydrangea macrophylla HOM05D014173 ORTHO05D000001 6.9e-08 61.6 101 38.6
TPR.G28647 Trifolium pratense HOM05D000002 ORTHO05D000001 6.9e-08 61.6 149 32.2
MD03G1056000 Malus domestica HOM05D000002 ORTHO05D000001 9.0e-08 61.2 180 26.1
Atru.chr1.1416 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-07 60.8 140 35.0
Atru.chr10.1206 Acer truncatum HOM05D000002 ORTHO05D000001 1.2e-07 60.8 92 37.0
Hma1.2p1_1093F.1_g256070 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.2e-07 60.8 148 33.8
MD00G1024600 Malus domestica HOM05D000002 ORTHO05D000001 1.2e-07 60.8 176 27.8
TPR.G33487 Trifolium pratense HOM05D000002 ORTHO05D000001 1.2e-07 60.8 168 31.0
MD11G1146000 Malus domestica HOM05D000002 ORTHO05D000001 1.5e-07 60.5 182 29.7
TPR.G24932 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-07 60.5 177 30.5
CAN.G439.15 Capsicum annuum HOM05D000002 ORTHO05D000001 2.0e-07 60.1 92 39.1
ECA233G3460 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.0e-07 60.1 171 29.2
Psat3g114760 Pisum sativum HOM05D000002 ORTHO05D000001 2.0e-07 60.1 140 32.1
RcHm_v2.0_Chr5g0082731 Rosa chinensis HOM05D000002 ORTHO05D000001 2.0e-07 60.1 165 32.7
CSS0017009 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.6e-07 59.7 92 38.0
Hma1.2p1_1151F.1_g261930 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 2.6e-07 59.7 127 34.6
MD04G1231400 Malus domestica HOM05D000002 ORTHO05D000001 2.6e-07 59.7 182 29.1
TPR.G27549 Trifolium pratense HOM05D000002 ORTHO05D000001 2.6e-07 59.7 132 33.3
CAN.G2055.2 Capsicum annuum HOM05D011121 ORTHO05D018873 3.4e-07 59.3 112 36.6
Cc06_g20010 Coffea canephora HOM05D000002 ORTHO05D000001 3.4e-07 59.3 126 31.0
MD07G1259300 Malus domestica HOM05D000002 ORTHO05D000157 3.4e-07 59.3 135 31.9
RcHm_v2.0_Chr3g0475621 Rosa chinensis HOM05D000002 ORTHO05D000001 3.4e-07 59.3 176 26.1
TPR.G20034 Trifolium pratense HOM05D000002 ORTHO05D000001 3.4e-07 59.3 152 34.2
CSS0001487 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 4.5e-07 58.9 167 31.1
Hma1.2p1_0459F.1_g157220 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 4.5e-07 58.9 151 29.1
MD17G1109500 Malus domestica HOM05D000002 ORTHO05D000001 4.5e-07 58.9 171 29.8
Rhsim05G0196600 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.5e-07 58.9 181 29.8
ECA246G3662 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.8e-07 58.5 181 32.0
CSS0034832 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 7.6e-07 58.2 174 30.5
FvH4_3g07841 Fragaria vesca HOM05D000002 ORTHO05D000001 7.6e-07 58.2 127 29.9
Atru.chr8.532 Acer truncatum HOM05D000002 ORTHO05D000001 9.9e-07 57.8 173 28.9
ECA246G0664 Erigeron canadensis HOM05D000002 ORTHO05D000001 9.9e-07 57.8 115 34.8
HanXRQChr12g0377931 Helianthus annuus HOM05D000002 ORTHO05D000001 9.9e-07 57.8 171 26.3
Hma1.2p1_2397F.1_g321370 Hydrangea macrophylla HOM05D014173 ORTHO05D000001 9.9e-07 57.8 101 38.6
RcHm_v2.0_Chr2g0159441 Rosa chinensis HOM05D000002 ORTHO05D000001 9.9e-07 57.8 195 27.2
Sabra14G0114400 Salix brachista HOM05D000002 ORTHO05D000001 9.9e-07 57.8 143 30.8
TPR.G17518 Trifolium pratense HOM05D000002 ORTHO05D000001 9.9e-07 57.8 148 31.1
TPR.G22883 Trifolium pratense HOM05D000269 ORTHO05D000216 9.9e-07 57.8 161 28.6
Atru.chr8.491 Acer truncatum HOM05D000002 ORTHO05D000001 1.3e-06 57.4 76 43.4
MD17G1115400 Malus domestica HOM05D000002 ORTHO05D000001 1.3e-06 57.4 179 30.7
ECA233G6252 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.7e-06 57.0 130 34.6
MD09G1214100 Malus domestica HOM05D000002 ORTHO05D000001 1.7e-06 57.0 178 28.1
Os02g0671800 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D000001 1.7e-06 57.0 175 27.4
PSO566G0172 Papaver somniferum HOM05D000002 ORTHO05D000001 1.7e-06 57.0 115 34.8
CSS0025657 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.2e-06 56.6 92 39.1
ClCG01G011050 Citrullus lanatus HOM05D007933 ORTHO05D000001 2.2e-06 56.6 74 39.2
COL.COLO4_07246 Corchorus olitorius HOM05D000002 ORTHO05D000001 2.9e-06 56.2 167 26.9
Rhsim04G0108900 Rhododendron simsii HOM05D000002 ORTHO05D000001 2.9e-06 56.2 169 31.4
THA.LOC104807900 Tarenaya hassleriana HOM05D000002 ORTHO05D000001 2.9e-06 56.2 121 37.2
Hma1.2p1_0185F.1_g081390 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.8e-06 55.8 92 37.0
Hma1.2p1_0577F.1_g182200 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 3.8e-06 55.8 86 38.4
Lalb_Chr06g0171641 Lupinus albus HOM05D000002 ORTHO05D000001 3.8e-06 55.8 96 35.4
ECA238G4167 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.9e-06 55.5 175 30.3
MD12G1175300 Malus domestica HOM05D000002 ORTHO05D000001 4.9e-06 55.5 176 26.1
Rhsim07G0235300 Rhododendron simsii HOM05D000002 ORTHO05D000001 4.9e-06 55.5 105 31.4


User provided reference genes

Program Settings