Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g011190.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 4.3e-29 130.6 63 100.0
Solyc01g011180.1 Solanum lycopersicum HOM05D006510 ORTHO05D008171 6.9e-27 123.2 63 93.7
Solyc12g013950.2 Solanum lycopersicum HOM05D006510 ORTHO05D008171 3.5e-23 110.9 56 94.6
Sopen12g005700 Solanum pennellii HOM05D006510 ORTHO05D008171 3.5e-23 110.9 56 94.6
PGSC0003DMG400015368 Solanum tuberosum HOM05D006510 ORTHO05D008171 1.5e-21 105.5 56 91.1
Nitab4.5_0002027g0190 Nicotiana tabacum HOM05D006510 ORTHO05D008171 2.5e-21 104.8 56 89.3
Nitab4.5_0006142g0020 Nicotiana tabacum HOM05D006510 ORTHO05D008171 3.3e-21 104.4 56 89.3
CAN.G1716.4 Capsicum annuum HOM05D006510 ORTHO05D008171 1.6e-20 102.1 56 85.7
Peaxi162Scf00229g01116 Petunia axillaris HOM05D006510 ORTHO05D008171 8.2e-20 99.8 56 83.9
Lalb_Chr24g0400131 Lupinus albus HOM05D006510 ORTHO05D008171 1.6e-15 85.5 57 70.2
CSS0034147 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 3.6e-15 84.3 57 66.7
CSS0039339 Camellia sinensis var. sinensis HOM05D006510 ORTHO05D008171 4.6e-15 84.0 57 64.9
Eucgr.K01140 Eucalyptus grandis HOM05D006510 ORTHO05D008171 4.6e-15 84.0 57 63.2
MBI16_g39629_MAGBIO Magnolia biondii HOM05D006510 ORTHO05D008171 4.6e-15 84.0 58 74.1
PGR142G2695 Punica granatum HOM05D006510 ORTHO05D008171 4.6e-15 84.0 57 68.4
Ciclev10014241m.g Citrus clementina HOM05D006510 ORTHO05D008171 1.3e-14 82.4 57 68.4
Migut.M00272 Erythranthe guttata HOM05D006510 ORTHO05D008171 1.3e-14 82.4 57 70.2
Glyma.12G129300 Glycine max HOM05D006510 ORTHO05D008171 1.3e-14 82.4 56 69.6
Medtr4g080110 Medicago truncatula HOM05D006510 ORTHO05D008171 1.8e-14 82.0 57 68.4
CANSAT78G1126 Cannabis sativa HOM05D006510 ORTHO05D008171 2.3e-14 81.6 57 66.7
arahy.Tifrunner.gnm1.ann1.J1H900 Arachis hypogaea HOM05D006510 ORTHO05D008171 3.0e-14 81.3 56 71.4
arahy.Tifrunner.gnm1.ann1.JGR80D Arachis hypogaea HOM05D006510 ORTHO05D008171 3.0e-14 81.3 56 71.4
Phvul.011G128400 Phaseolus vulgaris HOM05D006510 ORTHO05D008171 3.0e-14 81.3 56 69.6
Prupe.3G115700 Prunus persica HOM05D006510 ORTHO05D008171 3.9e-14 80.9 57 63.2
TPR.G13821 Trifolium pratense HOM05D006510 ORTHO05D008171 3.9e-14 80.9 57 68.4
GSVIVG01020726001 Vitis vinifera HOM05D006510 ORTHO05D008171 3.9e-14 80.9 57 68.4
SGA_v2.0_scaffold9G04837 Striga asiatica HOM05D006510 ORTHO05D008171 5.1e-14 80.5 57 63.2
TPR.G16532 Trifolium pratense HOM05D006510 ORTHO05D008171 5.1e-14 80.5 57 68.4
ClCG07G002720 Citrullus lanatus HOM05D006510 ORTHO05D008171 8.7e-14 79.7 57 71.9
Glyma.06G276100 Glycine max HOM05D006510 ORTHO05D008171 8.7e-14 79.7 56 67.9
Psat7g163800 Pisum sativum HOM05D006510 ORTHO05D008171 8.7e-14 79.7 56 69.6
QL08p042146 Quercus lobata HOM05D006510 ORTHO05D008171 8.7e-14 79.7 57 70.2
Cfa021921 Carpinus fangiana HOM05D006510 ORTHO05D008171 1.1e-13 79.3 57 68.4
Haze_13408 Corylus avellana HOM05D006510 ORTHO05D008171 1.1e-13 79.3 57 68.4
Sabra14G0108000 Salix brachista HOM05D006510 ORTHO05D008171 1.5e-13 79.0 57 64.9
Atru.chr6.2773 Acer truncatum HOM05D006510 ORTHO05D008171 1.9e-13 78.6 57 66.7
Hma1.2p1_0178F.1_g078710 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.9e-13 78.6 56 66.1
Lj3g0027149 Lotus japonicus HOM05D006510 ORTHO05D008171 1.9e-13 78.6 57 66.7
MD11G1004500 Malus domestica HOM05D006510 ORTHO05D008171 1.9e-13 78.6 57 61.4
Rhsim04G0074900 Rhododendron simsii HOM05D006510 ORTHO05D008171 3.3e-13 77.8 57 61.4
AUR62029599 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 63.2
DCAR_013276 Daucus carota HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 64.9
FvH4_6g27600 Fragaria vesca HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 63.2
FAN05G5099 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 63.2
FAN14G1437 Fragaria x ananassa HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 63.2
Nn8g40464 Nelumbo nucifera HOM05D006510 ORTHO05D008171 4.3e-13 77.4 57 68.4
RcHm_v2.0_Chr2g0130091 Rosa chinensis HOM05D006510 ORTHO05D008171 5.7e-13 77.0 57 61.4
vmacro09212 Vaccinium macrocarpon HOM05D006510 ORTHO05D008171 5.7e-13 77.0 57 63.2
Lj8C100T15 Lonicera japonica HOM05D006510 ORTHO05D008171 7.4e-13 76.6 57 61.4
PSO478G4451 Papaver somniferum HOM05D006510 ORTHO05D008171 7.4e-13 76.6 56 66.1
FAN02G4134 Fragaria x ananassa HOM05D006510 ORTHO05D008171 9.7e-13 76.3 57 63.2
TWI38G0436 Tripterygium wilfordii HOM05D006510 ORTHO05D008171 9.7e-13 76.3 57 64.9
COL.COLO4_33599 Corchorus olitorius HOM05D006510 ORTHO05D008171 1.3e-12 75.9 57 59.6
Hma1.2p1_0178F.1_g078700 Hydrangea macrophylla HOM05D006510 ORTHO05D008171 1.6e-12 75.5 55 69.1
Potri.014G142900 Populus trichocarpa HOM05D006510 ORTHO05D008171 1.6e-12 75.5 57 61.4
Oeu001793.2 Olea europaea HOM05D006510 ORTHO05D008171 2.2e-12 75.1 51 66.7
CsaV3_1G037360 Cucumis sativus L. HOM05D006510 ORTHO05D008171 2.8e-12 74.7 57 66.7
AUR62041733 Chenopodium quinoa HOM05D006510 ORTHO05D008171 4.8e-12 73.9 57 61.4
Duzib147G0397 Durio zibethinus HOM05D006510 ORTHO05D008171 4.8e-12 73.9 57 57.9
TAR636G1540 Trochodendron aralioides HOM05D006510 ORTHO05D008171 4.8e-12 73.9 57 64.9
EL10Ac9g20963 Beta vulgaris HOM05D006510 ORTHO05D008171 6.3e-12 73.6 57 61.4
MELO3C002806.2 Cucumis melo HOM05D006510 ORTHO05D008171 6.3e-12 73.6 57 64.9
ATR0796G261 Amborella trichopoda HOM05D006510 ORTHO05D008171 8.2e-12 73.2 58 65.5
Actinidia03942 Actinidia chinensis HOM05D006510 ORTHO05D008171 1.1e-11 72.8 57 61.4
Thecc.01G152700 Theobroma cacao HOM05D006510 ORTHO05D008171 1.1e-11 72.8 57 56.1
Ca_18866_v3 Cicer arietinum L. HOM05D006510 ORTHO05D008171 1.4e-11 72.4 57 64.9
PSO782G3259 Papaver somniferum HOM05D006510 ORTHO05D008171 1.4e-11 72.4 56 62.5
Sed0011358 Sechium edule HOM05D006510 ORTHO05D008171 1.4e-11 72.4 57 68.4
Sc12g0003550 Simmondsia chinensis HOM05D006510 ORTHO05D008171 1.4e-11 72.4 56 62.5
TAR629G0105 Trochodendron aralioides HOM05D006510 ORTHO05D008171 1.4e-11 72.4 57 61.4
unitig_46.g18272 Utricularia gibba HOM05D006510 ORTHO05D008171 1.4e-11 72.4 57 57.9
Manes.07G057100 Manihot esculenta HOM05D006510 ORTHO05D008171 2.4e-11 71.6 54 64.8
Ah.01g004980 Amaranthus hybridus HOM05D006510 ORTHO05D008171 3.1e-11 71.2 57 57.9
AT2G42700 Arabidopsis thaliana HOM05D006510 ORTHO05D008171 5.3e-11 70.5 56 55.4
Cc05_g08450 Coffea canephora HOM05D006510 ORTHO05D008171 5.3e-11 70.5 56 58.9
Carub.0004s2514 Capsella rubella HOM05D006510 ORTHO05D008171 6.9e-11 70.1 56 53.6
CDE04G2642 Ceratophyllum demersum HOM05D006510 ORTHO05D008171 6.9e-11 70.1 57 59.6
Aqoxy5G02856 Aquilegia oxysepala HOM05D006510 ORTHO05D008171 9.1e-11 69.7 54 61.1
Os11g0169100 Oryza sativa ssp. japonica HOM05D006510 ORTHO05D008171 9.1e-11 69.7 57 61.4
AL4G41260 Arabidopsis lyrata HOM05D006510 ORTHO05D008171 1.2e-10 69.3 56 53.6
Thhalv10016247m.g Eutrema salsugineum HOM05D006510 ORTHO05D008171 1.2e-10 69.3 56 55.4
THA.LOC104823853 Tarenaya hassleriana HOM05D006510 ORTHO05D008171 1.2e-10 69.3 56 57.1
Aa31LG1G24480 Aethionema arabicum HOM05D006510 ORTHO05D008171 2.6e-10 68.2 57 52.6
CiPaw.03G194300 Carya illinoinensis HOM05D006510 ORTHO05D008171 3.4e-10 67.8 54 61.1
Gohir.A09G003200 Gossypium hirsutum HOM05D006510 ORTHO05D008171 3.4e-10 67.8 57 56.1
BolC4t22028H Brassica oleracea HOM05D006510 ORTHO05D008171 4.5e-10 67.4 56 51.8
CARHR137800 Cardamine hirsuta HOM05D006510 ORTHO05D008171 4.5e-10 67.4 56 53.6
Lsat_1_v5_gn_4_64481 Lactuca sativa HOM05D006510 ORTHO05D008171 4.5e-10 67.4 56 57.1
C04p03920 Brassica napus HOM05D006510 ORTHO05D008171 7.7e-10 66.6 56 51.8
Gorai.006G003700 Gossypium raimondii HOM05D006510 ORTHO05D008171 1.0e-09 66.2 57 54.4
Sp4g24850 Schrenkiella parvula HOM05D006510 ORTHO05D008171 1.7e-09 65.5 56 51.8
A05p03350 Brassica napus HOM05D006510 ORTHO05D008171 2.2e-09 65.1 56 51.8
HPP92_014652 Vanilla planifolia HOM05D006510 ORTHO05D008171 3.8e-09 64.3 57 61.4
ECA248G1772 Erigeron canadensis HOM05D006510 ORTHO05D008171 5.0e-09 63.9 57 54.4
BraA05t19323Z Brassica rapa HOM05D006510 ORTHO05D008171 8.5e-09 63.2 56 50.0
Pp3c9_21860 Physcomitrium patens HOM05D006510 ORTHO05D008171 9.4e-08 59.7 55 50.9
Mapoly0047s0091 Marchantia polymorpha HOM05D006510 ORTHO05D008171 2.1e-07 58.5 56 46.4


User provided reference genes

Program Settings