Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g011040.3 Solanum lycopersicum HOM05D003751 ORTHO05D004765 1.3e-76 290.8 332 100.0
Sopen01g034040 Solanum pennellii HOM05D003751 ORTHO05D004765 1.3e-76 290.8 332 100.0
PGSC0003DMG400004190 Solanum tuberosum HOM05D003751 ORTHO05D004765 3.0e-73 279.6 332 98.8
Nitab4.5_0002832g0050 Nicotiana tabacum HOM05D003751 ORTHO05D004765 1.6e-69 267.3 332 97.0
Nitab4.5_0000720g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 2.3e-68 263.5 332 96.4
CAN.G541.15 Capsicum annuum HOM05D003751 ORTHO05D004765 2.1e-66 256.9 326 96.6
FAN22G1318 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.3e-60 237.7 318 95.3
FAN17G0137 Fragaria x ananassa HOM05D003751 ORTHO05D004765 1.7e-60 237.3 318 95.0
RcHm_v2.0_Chr4g0438711 Rosa chinensis HOM05D003751 ORTHO05D004765 1.1e-59 234.6 324 93.8
COL.COLO4_36892 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.5e-59 234.2 323 93.5
CiPaw.05G127300 Carya illinoinensis HOM05D003751 ORTHO05D004765 2.5e-59 233.4 324 94.8
Lj6A782T110 Lonicera japonica HOM05D003751 ORTHO05D004765 2.5e-59 233.4 322 94.4
Cpa.g.sc1.101 Carica papaya HOM05D003751 ORTHO05D004765 3.3e-59 233.0 322 93.8
HanXRQChr08g0211521 Helianthus annuus HOM05D003751 ORTHO05D004765 5.6e-59 232.3 319 94.4
QL03p071051 Quercus lobata HOM05D003751 ORTHO05D004765 7.3e-59 231.9 321 91.9
HanXRQChr12g0379561 Helianthus annuus HOM05D003751 ORTHO05D004765 9.5e-59 231.5 322 93.8
Gohir.A07G069400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 1.6e-58 230.7 326 92.3
Lsat_1_v5_gn_4_12041 Lactuca sativa HOM05D003751 ORTHO05D004765 1.6e-58 230.7 318 94.0
Actinidia33247 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-58 230.3 330 91.8
Cfa008900 Carpinus fangiana HOM05D003751 ORTHO05D004765 2.1e-58 230.3 324 94.1
ECA233G2546 Erigeron canadensis HOM05D003751 ORTHO05D004765 2.1e-58 230.3 322 92.9
Prupe.1G283000 Prunus persica HOM05D003751 ORTHO05D004765 2.1e-58 230.3 323 93.8
Gorai.001G078000 Gossypium raimondii HOM05D003751 ORTHO05D004765 2.8e-58 229.9 326 92.0
Lsat_1_v5_gn_8_48161 Lactuca sativa HOM05D003751 ORTHO05D004765 2.8e-58 229.9 330 91.8
Gohir.A12G180500 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.7e-58 229.2 324 91.0
CANSAT80G0608 Cannabis sativa HOM05D003751 ORTHO05D004765 6.1e-58 228.8 322 93.2
CANSAT80G1362 Cannabis sativa HOM05D003751 ORTHO05D004765 6.1e-58 228.8 322 93.2
Lalb_Chr10g0098641 Lupinus albus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 322 93.5
Lalb_Chr17g0341071 Lupinus albus HOM05D003751 ORTHO05D004765 6.1e-58 228.8 323 93.5
Gohir.D07G073800 Gossypium hirsutum HOM05D003751 ORTHO05D004765 8.0e-58 228.4 326 92.0
Nn4g23361 Nelumbo nucifera HOM05D003751 ORTHO05D004765 1.0e-57 228.0 325 91.7
TAR622G0005 Trochodendron aralioides HOM05D003751 ORTHO05D004765 1.0e-57 228.0 323 88.9
Manes.05G108200 Manihot esculenta HOM05D003751 ORTHO05D004765 1.4e-57 227.6 322 91.9
Peaxi162Scf00097g00610 Petunia axillaris HOM05D003751 ORTHO05D004765 1.8e-57 227.3 348 64.7
Thecc.03G096900 Theobroma cacao HOM05D003751 ORTHO05D004765 2.3e-57 226.9 325 93.5
GSVIVG01012205001 Vitis vinifera HOM05D003751 ORTHO05D004765 2.3e-57 226.9 303 97.7
Glyma.02G114800 Glycine max HOM05D003751 ORTHO05D004765 3.0e-57 226.5 333 91.6
MD13G1065200 Malus domestica HOM05D003751 ORTHO05D004765 3.0e-57 226.5 321 92.8
Gorai.008G196500 Gossypium raimondii HOM05D003751 ORTHO05D004765 4.0e-57 226.1 324 92.3
Hma1.2p1_0357F.1_g134490 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 4.0e-57 226.1 322 93.8
TPR.G24438 Trifolium pratense HOM05D003751 ORTHO05D004765 4.0e-57 226.1 322 92.9
TWI79G0662 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 4.0e-57 226.1 332 92.2
Duzib205G0623 Durio zibethinus HOM05D003751 ORTHO05D004765 5.2e-57 225.7 325 90.8
Ciclev10021138m.g Citrus clementina HOM05D003751 ORTHO05D004765 6.8e-57 225.3 321 93.8
arahy.Tifrunner.gnm1.ann1.V223R1 Arachis hypogaea HOM05D003751 ORTHO05D004765 1.2e-56 224.6 323 92.9
arahy.Tifrunner.gnm1.ann1.Y3WTJM Arachis hypogaea HOM05D003751 ORTHO05D004765 1.2e-56 224.6 323 92.9
Psat2g128600 Pisum sativum HOM05D003751 ORTHO05D004765 1.2e-56 224.6 320 93.1
CiPaw.06G090700 Carya illinoinensis HOM05D003751 ORTHO05D004765 1.5e-56 224.2 306 96.4
Lj2g0008638 Lotus japonicus HOM05D003751 ORTHO05D004765 1.5e-56 224.2 326 91.7
MD16G1063500 Malus domestica HOM05D003751 ORTHO05D004765 1.5e-56 224.2 326 91.4
VMungo1215G2610 Vigna mungo HOM05D003751 ORTHO05D004765 1.5e-56 224.2 327 91.4
Phvul.002G081300 Phaseolus vulgaris HOM05D003751 ORTHO05D004765 2.0e-56 223.8 323 92.6
Hund14089 Selenicereus undatus HOM05D003751 ORTHO05D004765 2.6e-56 223.4 324 89.5
Ca_04940_v3 Cicer arietinum L. HOM05D003751 ORTHO05D004765 3.4e-56 223.0 332 90.7
Nn3g17386 Nelumbo nucifera HOM05D003751 ORTHO05D004765 7.5e-56 221.9 325 91.1
Actinidia12325 Actinidia chinensis HOM05D003751 ORTHO05D004765 1.3e-55 221.1 322 92.9
Glyma.01G056300 Glycine max HOM05D003751 ORTHO05D004765 1.3e-55 221.1 332 90.7
Manes.01G029800 Manihot esculenta HOM05D003751 ORTHO05D004765 1.3e-55 221.1 321 91.3
Migut.L01211 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.7e-55 220.7 326 91.4
Rhsim12G0134600 Rhododendron simsii HOM05D003751 ORTHO05D004765 1.7e-55 220.7 338 80.2
Cc11_g12270 Coffea canephora HOM05D003751 ORTHO05D004765 2.9e-55 219.9 334 91.0
PSO063G1864 Papaver somniferum HOM05D003751 ORTHO05D004765 4.9e-55 219.2 322 91.9
PGR102G2931 Punica granatum HOM05D003751 ORTHO05D004765 4.9e-55 219.2 327 89.9
Hund05853 Selenicereus undatus HOM05D003751 ORTHO05D004765 4.9e-55 219.2 332 87.7
THA.LOC104818332 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 4.9e-55 219.2 306 96.4
MSTRG.7761 Avicennia marina HOM05D003751 ORTHO05D004765 8.3e-55 218.4 331 90.6
Medtr5g043800 Medicago truncatula HOM05D003751 ORTHO05D004765 1.1e-54 218.0 322 91.9
Migut.E00057 Erythranthe guttata HOM05D003751 ORTHO05D004765 1.4e-54 217.6 330 90.3
Eucgr.B03173 Eucalyptus grandis HOM05D003751 ORTHO05D004765 1.4e-54 217.6 323 91.0
Sc11g0002320 Simmondsia chinensis HOM05D003751 ORTHO05D004765 1.4e-54 217.6 325 88.3
CsaV3_5G033180 Cucumis sativus L. HOM05D003751 ORTHO05D004765 2.4e-54 216.9 332 89.2
SGA_v2.0_scaffold36G14436 Striga asiatica HOM05D003751 ORTHO05D004765 2.4e-54 216.9 333 90.4
Sabra08G0070200 Salix brachista HOM05D003751 ORTHO05D004765 4.1e-54 216.1 323 89.8
Ah.03g139090 Amaranthus hybridus HOM05D003751 ORTHO05D004765 5.4e-54 215.7 328 87.8
Thhalv10004587m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 5.4e-54 215.7 321 91.6
Potri.008G093400 Populus trichocarpa HOM05D003751 ORTHO05D004765 5.4e-54 215.7 321 90.7
Potri.010G160700 Populus trichocarpa HOM05D003751 ORTHO05D004765 7.0e-54 215.3 323 89.5
Sed0012304 Sechium edule HOM05D003751 ORTHO05D004765 7.0e-54 215.3 320 89.4
AL8G37900 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 9.2e-54 214.9 321 91.6
CARHR274990 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.2e-53 214.5 323 91.6
SGA_v2.0_scaffold16G07765 Striga asiatica HOM05D003751 ORTHO05D004765 1.2e-53 214.5 333 90.1
THA.LOC104801343 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.2e-53 214.5 327 89.6
AT5G61240 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.6e-53 214.2 323 91.0
Carub.0008s2191 Capsella rubella HOM05D003751 ORTHO05D004765 1.6e-53 214.2 321 91.3
Sp2g24470 Schrenkiella parvula HOM05D003751 ORTHO05D004765 2.7e-53 213.4 321 92.2
A03p46870 Brassica napus HOM05D003751 ORTHO05D004765 3.5e-53 213.0 321 92.5
Dinv34089 Davidia involucrata HOM05D003751 ORTHO05D004765 4.6e-53 212.6 297 96.3
BcaC06g33170 Brassica carinata HOM05D003751 ORTHO05D004765 6.0e-53 212.2 307 94.8
BcaC06g33219 Brassica carinata HOM05D003751 ORTHO05D004765 7.8e-53 211.8 321 91.3
C07p44920 Brassica napus HOM05D003751 ORTHO05D004765 7.8e-53 211.8 321 91.3
Haze_11929 Corylus avellana HOM05D003751 ORTHO05D004765 1.0e-52 211.5 366 69.1
Thecc.02G335000 Theobroma cacao HOM05D003751 ORTHO05D004765 1.3e-52 211.1 323 89.8
Aa31LG11G2120 Aethionema arabicum HOM05D003751 ORTHO05D004765 3.0e-52 209.9 325 90.8
Duzib251G0914 Durio zibethinus HOM05D003751 ORTHO05D004765 3.0e-52 209.9 321 91.3
Sed0016795 Sechium edule HOM05D003751 ORTHO05D004765 6.6e-52 208.8 324 90.4
CSS0038990 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.6e-52 208.4 331 80.4
BcaC04g23458 Brassica carinata HOM05D003751 ORTHO05D004765 1.5e-51 207.6 321 90.7
A09p07270 Brassica napus HOM05D003751 ORTHO05D004765 1.5e-51 207.6 321 90.7
AUR62007943 Chenopodium quinoa HOM05D003751 ORTHO05D004765 3.3e-51 206.5 325 76.3
C09p08130 Brassica napus HOM05D003751 ORTHO05D004765 7.3e-51 205.3 321 90.3
TWI75G1095 Tripterygium wilfordii HOM05D003751 ORTHO05D004765 9.5e-51 204.9 253 89.7
COL.COLO4_27919 Corchorus olitorius HOM05D003751 ORTHO05D004765 1.2e-50 204.5 320 88.8
Actinidia19010 Actinidia chinensis HOM05D003751 ORTHO05D004765 2.1e-50 203.8 336 86.3
vmacro01326 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.1e-50 203.8 352 65.9
Peaxi162Scf00314g00122 Petunia axillaris HOM05D003751 ORTHO05D004765 2.8e-50 203.4 296 93.6
BraA03t13807Z Brassica rapa HOM05D003751 ORTHO05D004765 3.6e-50 203.0 330 78.2
Hma1.2p1_0322F.1_g124910 Hydrangea macrophylla HOM05D003751 ORTHO05D004765 8.0e-50 201.8 322 89.8
BolC7t45015H Brassica oleracea HOM05D003751 ORTHO05D004765 1.1e-49 201.4 337 74.5
FvH4_4g30420 Fragaria vesca HOM05D003751 ORTHO05D004765 5.2e-49 199.1 324 89.5
SalBow2G2522 Salvia bowleyana HOM05D003751 ORTHO05D004765 6.8e-49 198.7 346 85.3
AUR62003123 Chenopodium quinoa HOM05D003751 ORTHO05D004765 8.9e-49 198.4 246 87.8
CDE07G1785 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 2.0e-48 197.2 305 91.1
Sabra10G0122300 Salix brachista HOM05D003751 ORTHO05D004765 2.0e-48 197.2 244 89.8
SEGI_02286 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.6e-48 196.8 324 86.4
BraA09t36376Z Brassica rapa HOM05D003751 ORTHO05D004765 3.4e-48 196.4 340 72.9
SalBow2G2568 Salvia bowleyana HOM05D003751 ORTHO05D004765 1.3e-47 194.5 346 77.2
Gohir.D12G183125 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.9e-47 192.6 324 81.5
Gohir.D12G183200 Gossypium hirsutum HOM05D003751 ORTHO05D004765 4.9e-47 192.6 324 81.5
THA.LOC104824065 Tarenaya hassleriana HOM05D003751 ORTHO05D004765 1.4e-46 191.0 321 85.4
FAN12G0947 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.2e-46 189.9 336 76.8
MSTRG.738 Avicennia marina HOM05D003751 ORTHO05D004765 4.1e-46 189.5 326 86.2
PSO384G1483 Papaver somniferum HOM05D003751 ORTHO05D004765 4.1e-46 189.5 322 88.2
MELO3C002928.2 Cucumis melo HOM05D003751 ORTHO05D004765 5.4e-46 189.1 322 88.5
Gohir.D02G128600 Gossypium hirsutum HOM05D003751 ORTHO05D004765 7.0e-46 188.7 305 88.9
Gorai.005G144300 Gossypium raimondii HOM05D003751 ORTHO05D004765 7.0e-46 188.7 305 88.9
Aqoxy3G03571 Aquilegia oxysepala HOM05D003751 ORTHO05D004765 2.1e-45 187.2 322 87.9
SHI26375 Sapria himalayana HOM05D003751 ORTHO05D004765 3.9e-44 183.0 241 71.4
CSS0000444 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 6.6e-44 182.2 327 70.6
ClCG09G022210 Citrullus lanatus HOM05D003751 ORTHO05D004765 8.6e-44 181.8 326 73.3
CsaV3_5G025510 Cucumis sativus L. HOM05D003751 ORTHO05D004765 8.6e-44 181.8 322 87.9
ATR0064G031 Amborella trichopoda HOM05D003751 ORTHO05D004765 1.9e-43 180.6 320 85.3
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.9e-43 180.6 237 90.3
DCAR_007183 Daucus carota HOM05D003751 ORTHO05D004765 9.5e-43 178.3 339 82.3
FAN07G2601 Fragaria x ananassa HOM05D003751 ORTHO05D004765 3.6e-42 176.4 98 84.7
MBI16_g16360_MAGBIO Magnolia biondii HOM05D003751 ORTHO05D004765 4.7e-42 176.0 330 84.8
QL03p070738 Quercus lobata HOM05D003751 ORTHO05D004765 4.7e-42 176.0 96 90.6
AL1G25740 Arabidopsis lyrata HOM05D003751 ORTHO05D004765 8.1e-42 175.3 322 83.5
Sp1g12050 Schrenkiella parvula HOM05D003751 ORTHO05D004765 8.1e-42 175.3 324 82.4
Thhalv10008166m.g Eutrema salsugineum HOM05D003751 ORTHO05D004765 1.4e-41 174.5 324 84.3
AT1G13910 Arabidopsis thaliana HOM05D003751 ORTHO05D004765 1.8e-41 174.1 323 83.3
vmacro16373 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-41 173.7 107 78.5
vmacro23251 Vaccinium macrocarpon HOM05D003751 ORTHO05D004765 2.3e-41 173.7 107 78.5
HPP92_007743 Vanilla planifolia HOM05D003751 ORTHO05D004765 2.3e-41 173.7 320 86.2
SalBow2G0317 Salvia bowleyana HOM05D003751 ORTHO05D004765 3.1e-41 173.3 222 94.1
Dinv38780 Davidia involucrata HOM05D003751 ORTHO05D004765 1.2e-40 171.4 97 85.6
MELO3C012139.2 Cucumis melo HOM05D003751 ORTHO05D004765 3.4e-40 169.9 105 79.0
Cpa.g.sc94.5 Carica papaya HOM05D003751 ORTHO05D004765 9.9e-40 168.3 306 54.6
ClCG05G023830 Citrullus lanatus HOM05D003751 ORTHO05D004765 1.7e-39 167.5 105 78.1
Carub.0001s1361 Capsella rubella HOM05D003751 ORTHO05D004765 2.4e-38 163.7 329 82.7
DCAR_005254 Daucus carota HOM05D003751 ORTHO05D004765 3.2e-38 163.3 96 83.3
DCAR_016919 Daucus carota HOM05D003751 ORTHO05D004765 3.2e-38 163.3 96 83.3
Os03g0211900 Oryza sativa ssp. japonica HOM05D003751 ORTHO05D004765 2.1e-37 160.6 100 78.0
CDE04G0854 Ceratophyllum demersum HOM05D003751 ORTHO05D004765 6.0e-37 159.1 81 88.9
Zm00001eb008460 Zea mays HOM05D003751 ORTHO05D004765 1.0e-36 158.3 101 76.2
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 9.5e-35 151.8 244 80.3
Hund25193 Selenicereus undatus HOM05D003751 ORTHO05D004765 1.9e-30 137.5 73 86.3
AagrBONN_evm.TU.Sc2ySwM_228.5257 Anthoceros agrestis HOM05D003751 ORTHO05D004765 1.2e-29 134.8 324 76.9
SMO307G0068 Selaginella moellendorffii HOM05D003751 ORTHO05D004765 2.1e-29 134.0 304 80.3
CARHR014280 Cardamine hirsuta HOM05D003751 ORTHO05D004765 1.0e-28 131.7 97 62.9
Actinidia28633 Actinidia chinensis HOM05D003751 ORTHO05D004765 3.3e-27 126.7 276 81.9
Oeu031422.1 Olea europaea HOM05D003751 ORTHO05D004765 1.6e-26 124.4 80 76.2
Nitab4.5_0017073g0010 Nicotiana tabacum HOM05D003751 ORTHO05D004765 3.9e-20 103.2 65 76.9
Nitab4.5_0004304g0080 Nicotiana tabacum HOM05D003751 ORTHO05D004765 6.6e-20 102.4 73 69.9
Sopen05g021560 Solanum pennellii HOM05D003751 ORTHO05D004765 4.8e-18 96.3 50 84.0
CSS0008157 Camellia sinensis var. sinensis HOM05D003751 ORTHO05D004765 8.1e-18 95.5 118 91.5
Lj3A1031T31 Lonicera japonica HOM05D003751 ORTHO05D004765 2.4e-17 94.0 118 57.6
SMO239G0097 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 2.4e-17 94.0 64 64.1
Dinv16710 Davidia involucrata HOM05D003751 ORTHO05D004765 6.9e-17 92.4 245 71.8
Gohir.A03G103400 Gossypium hirsutum HOM05D003751 ORTHO05D004765 9.0e-17 92.0 258 87.6
SMO239G0021 Selaginella moellendorffii HOM05D003751 ORTHO05D011646 4.5e-16 89.7 64 62.5
RcHm_v2.0_Chr3g0459551 Rosa chinensis HOM05D003751 ORTHO05D004765 2.1e-13 80.9 48 83.3
SEGI_40768 Sequoiadendron giganteum HOM05D003751 ORTHO05D004765 2.1e-13 80.9 62 61.3
Sopen05g021540 Solanum pennellii HOM05D003751 ORTHO05D004765 2.7e-13 80.5 50 76.0
CAN.G607.6 Capsicum annuum HOM05D003751 ORTHO05D024790 2.3e-12 77.4 41 90.2
Gohir.D13G128551 Gossypium hirsutum HOM05D003751 ORTHO05D024790 2.5e-11 73.9 41 90.2
Gorai.013G144600 Gossypium raimondii HOM05D003751 ORTHO05D024790 2.1e-10 70.9 41 87.8
BolC2t12198H Brassica oleracea HOM05D003751 ORTHO05D017703 1.4e-09 68.2 81 51.9
C02p61470 Brassica napus HOM05D003751 ORTHO05D017703 1.2e-08 65.1 81 49.4
Sopen01g022300 Solanum pennellii HOM05D003751 ORTHO05D004765 4.5e-08 63.2 40 75.0
BraA02t09094Z Brassica rapa HOM05D003751 ORTHO05D004765 2.2e-07 60.8 44 72.7


User provided reference genes

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