Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g010640.3 Solanum lycopersicum HOM05D007070 ORTHO05D008892 1.1e-100 370.2 206 100.0
PGSC0003DMG400000874 Solanum tuberosum HOM05D007070 ORTHO05D008892 1.4e-97 359.8 185 98.4
Sopen01g006270 Solanum pennellii HOM05D007070 ORTHO05D008892 2.4e-97 359.0 186 98.4
Nitab4.5_0012600g0010 Nicotiana tabacum HOM05D007070 ORTHO05D008892 5.3e-84 314.7 185 86.5
Nitab4.5_0000141g0310 Nicotiana tabacum HOM05D007070 ORTHO05D008892 2.6e-83 312.4 186 85.5
CAN.G375.28 Capsicum annuum HOM05D007070 ORTHO05D008892 1.3e-82 310.1 189 86.8
Peaxi162Scf00026g00288 Petunia axillaris HOM05D007070 ORTHO05D008892 9.0e-76 287.3 188 83.0
Hma1.2p1_0598F.1_g186810 Hydrangea macrophylla HOM05D007070 ORTHO05D008892 8.5e-66 254.2 194 70.1
FAN17G0782 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.6e-64 248.8 177 75.7
Potri.010G093300 Populus trichocarpa HOM05D007070 ORTHO05D008892 3.6e-64 248.8 201 70.1
Actinidia31196 Actinidia chinensis HOM05D007070 ORTHO05D008892 4.6e-64 248.4 170 76.5
Lsat_1_v5_gn_8_52140 Lactuca sativa HOM05D007070 ORTHO05D008892 1.0e-63 247.3 192 71.9
FAN07G2888 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.8e-63 246.5 164 79.3
MD13G1074900 Malus domestica HOM05D007070 ORTHO05D008892 1.8e-63 246.5 207 67.6
Haze_12036 Corylus avellana HOM05D007070 ORTHO05D008892 2.3e-63 246.1 197 69.0
Manes.05G098800 Manihot esculenta HOM05D007070 ORTHO05D008892 3.0e-63 245.7 185 73.0
Sabra10G0065800 Salix brachista HOM05D007070 ORTHO05D008892 3.9e-63 245.4 202 68.8
CSS0037166 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 5.1e-63 245.0 193 72.0
CSS0050316 Camellia sinensis var. sinensis HOM05D007070 ORTHO05D008892 5.1e-63 245.0 193 72.0
PGR119G1526 Punica granatum HOM05D007070 ORTHO05D008892 5.1e-63 245.0 178 73.0
Lj3P1040T26 Lonicera japonica HOM05D007070 ORTHO05D008892 6.7e-63 244.6 197 72.6
RcHm_v2.0_Chr4g0440151 Rosa chinensis HOM05D007070 ORTHO05D008892 1.1e-62 243.8 179 72.6
Cc11_g13320 Coffea canephora HOM05D007070 ORTHO05D008892 2.0e-62 243.0 194 70.1
Prupe.1G271300 Prunus persica HOM05D007070 ORTHO05D008892 2.0e-62 243.0 214 64.5
SGA_v2.0_scaffold302G47841 Striga asiatica HOM05D007070 ORTHO05D008892 2.0e-62 243.0 186 72.6
TAR622G0001 Trochodendron aralioides HOM05D007070 ORTHO05D008892 2.0e-62 243.0 197 68.0
TAR374G1105 Trochodendron aralioides HOM05D007070 ORTHO05D008892 2.6e-62 242.7 197 67.0
DCAR_007140 Daucus carota HOM05D007070 ORTHO05D008892 3.3e-62 242.3 189 70.4
CiPaw.05G138000 Carya illinoinensis HOM05D007070 ORTHO05D008892 5.7e-62 241.5 183 68.9
COL.COLO4_22972 Corchorus olitorius HOM05D007070 ORTHO05D008892 7.4e-62 241.1 195 70.3
Dinv34174 Davidia involucrata HOM05D007070 ORTHO05D008892 9.7e-62 240.7 161 77.6
Thecc.02G352500 Theobroma cacao HOM05D007070 ORTHO05D008892 1.3e-61 240.4 194 70.6
Cpa.g.sc183.28 Carica papaya HOM05D007070 ORTHO05D008892 2.2e-61 239.6 182 70.3
FvH4_4g31650 Fragaria vesca HOM05D007070 ORTHO05D008892 2.2e-61 239.6 165 76.4
Duzib251G0126 Durio zibethinus HOM05D007070 ORTHO05D008892 2.8e-61 239.2 197 70.1
Atru.chr11.1834 Acer truncatum HOM05D007070 ORTHO05D008892 6.3e-61 238.0 190 70.0
SalBow2G0737 Salvia bowleyana HOM05D007070 ORTHO05D008892 6.3e-61 238.0 146 79.5
SalBow2G1571 Salvia bowleyana HOM05D007070 ORTHO05D008892 6.3e-61 238.0 146 79.5
Medtr5g038970 Medicago truncatula HOM05D007070 ORTHO05D008892 8.2e-61 237.7 200 65.0
arahy.Tifrunner.gnm1.ann1.P1GF9J Arachis hypogaea HOM05D007070 ORTHO05D008892 1.1e-60 237.3 198 68.2
FAN12G3127 Fragaria x ananassa HOM05D007070 ORTHO05D008892 1.1e-60 237.3 164 76.8
TWI75G1629 Tripterygium wilfordii HOM05D007070 ORTHO05D008892 1.1e-60 237.3 202 65.8
CsaV3_5G032500 Cucumis sativus L. HOM05D007070 ORTHO05D008892 1.4e-60 236.9 165 75.8
FAN22G1781 Fragaria x ananassa HOM05D007070 ORTHO05D008892 3.1e-60 235.7 161 77.6
Psat2g122360 Pisum sativum HOM05D007070 ORTHO05D008892 3.1e-60 235.7 203 64.0
MELO3C012078.2 Cucumis melo HOM05D007070 ORTHO05D008892 6.9e-60 234.6 165 75.2
QL03p064901 Quercus lobata HOM05D007070 ORTHO05D008892 6.9e-60 234.6 205 65.9
Migut.L01320 Erythranthe guttata HOM05D007070 ORTHO05D008892 1.2e-59 233.8 187 70.1
Gohir.A13G072600 Gossypium hirsutum HOM05D007070 ORTHO05D008892 1.5e-59 233.4 192 68.2
Gorai.013G083500 Gossypium raimondii HOM05D007070 ORTHO05D008892 1.5e-59 233.4 192 68.8
Aqoxy3G03327 Aquilegia oxysepala HOM05D007070 ORTHO05D008892 2.0e-59 233.0 162 74.7
CDE05G3062 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 2.0e-59 233.0 160 75.0
arahy.Tifrunner.gnm1.ann1.H49BTR Arachis hypogaea HOM05D007070 ORTHO05D008892 2.6e-59 232.6 198 66.7
Ciclev10032797m.g Citrus clementina HOM05D007070 ORTHO05D008892 3.4e-59 232.3 201 66.2
Gohir.D13G072700 Gossypium hirsutum HOM05D007070 ORTHO05D008892 7.7e-59 231.1 192 68.2
PSO591G0158 Papaver somniferum HOM05D007070 ORTHO05D008892 7.7e-59 231.1 202 65.3
PSO832G2327 Papaver somniferum HOM05D007070 ORTHO05D008892 7.7e-59 231.1 202 65.3
Duzib268G0688 Durio zibethinus HOM05D007070 ORTHO05D008892 1.0e-58 230.7 192 66.7
MBI05_g00391_MAGBIO Magnolia biondii HOM05D007070 ORTHO05D008892 1.3e-58 230.3 189 66.1
MSTRG.13406 Avicennia marina HOM05D007070 ORTHO05D008892 1.7e-58 229.9 173 72.3
Lalb_Chr10g0098121 Lupinus albus HOM05D007070 ORTHO05D008892 2.2e-58 229.6 206 63.6
Rhsim12G0131600 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.9e-58 229.2 148 77.7
RhsimUnG0241900 Rhododendron simsii HOM05D007070 ORTHO05D008892 2.9e-58 229.2 148 77.7
Ah.02g131260 Amaranthus hybridus HOM05D007070 ORTHO05D008892 3.8e-58 228.8 185 68.6
HanXRQChr08g0209191 Helianthus annuus HOM05D007070 ORTHO05D008892 3.8e-58 228.8 160 75.0
CANSAT56G2723 Cannabis sativa HOM05D007070 ORTHO05D008892 5.0e-58 228.4 163 71.8
Phvul.002G088700 Phaseolus vulgaris HOM05D007070 ORTHO05D008892 5.0e-58 228.4 198 65.7
VMungo1215G0639 Vigna mungo HOM05D007070 ORTHO05D008892 1.1e-57 227.3 173 70.5
ECA236G0127 Erigeron canadensis HOM05D007070 ORTHO05D008892 1.4e-57 226.9 171 71.9
Glyma.02G019200 Glycine max HOM05D007070 ORTHO05D008892 1.4e-57 226.9 194 66.0
ATR0564G356 Amborella trichopoda HOM05D007070 ORTHO05D008892 1.9e-57 226.5 163 70.6
Ca_04760_v3 Cicer arietinum L. HOM05D007070 ORTHO05D008892 2.5e-57 226.1 200 63.0
Eucgr.G02521 Eucalyptus grandis HOM05D007070 ORTHO05D008892 3.2e-57 225.7 190 66.3
Sed0007814 Sechium edule HOM05D007070 ORTHO05D008892 7.2e-57 224.6 191 67.0
Carub.0001s1403 Capsella rubella HOM05D007070 ORTHO05D008892 4.7e-56 221.9 190 66.3
ClCG05G024460 Citrullus lanatus HOM05D007070 ORTHO05D008892 7.9e-56 221.1 166 72.3
Sc04g0008310 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.0e-55 220.7 191 67.5
Glyma.01G044500 Glycine max HOM05D007070 ORTHO05D008892 1.8e-55 219.9 199 64.3
Thhalv10008846m.g Eutrema salsugineum HOM05D007070 ORTHO05D008892 3.0e-55 219.2 195 62.6
AL1G26230 Arabidopsis lyrata HOM05D007070 ORTHO05D008892 3.9e-55 218.8 197 64.0
AT1G14345 Arabidopsis thaliana HOM05D007070 ORTHO05D008892 6.7e-55 218.0 181 67.4
CARHR014780 Cardamine hirsuta HOM05D007070 ORTHO05D008892 6.7e-55 218.0 200 62.0
AUR62005745 Chenopodium quinoa HOM05D007070 ORTHO05D008892 6.7e-55 218.0 140 80.7
BcaB02g06484 Brassica carinata HOM05D007070 ORTHO05D008892 4.4e-54 215.3 181 65.7
Lj2g0006172 Lotus japonicus HOM05D007070 ORTHO05D008892 4.4e-54 215.3 134 80.6
Sp1g12710 Schrenkiella parvula HOM05D007070 ORTHO05D008892 1.3e-53 213.8 164 67.7
C05p12140 Brassica napus HOM05D007070 ORTHO05D008892 2.2e-53 213.0 143 76.9
BolC5t29966H Brassica oleracea HOM05D007070 ORTHO05D008892 2.2e-53 213.0 143 76.9
BraA06t24215Z Brassica rapa HOM05D007070 ORTHO05D008892 2.8e-53 212.6 143 76.9
A06p10330 Brassica napus HOM05D007070 ORTHO05D008892 3.7e-53 212.2 185 64.9
CDE05G3277 Ceratophyllum demersum HOM05D007070 ORTHO05D008892 1.4e-52 210.3 130 76.2
TPR.G36542 Trifolium pratense HOM05D007070 ORTHO05D008892 1.4e-52 210.3 118 84.7
Aa31LG1G700 Aethionema arabicum HOM05D007070 ORTHO05D008892 5.0e-50 201.8 195 58.5
HPP92_018585 Vanilla planifolia HOM05D007070 ORTHO05D008892 7.2e-49 198.0 186 56.5
MSTRG.684 Avicennia marina HOM05D007070 ORTHO05D008892 2.7e-48 196.1 186 61.8
THA.LOC104805942 Tarenaya hassleriana HOM05D007070 ORTHO05D008892 3.6e-48 195.7 127 78.7
AagrBONN_evm.TU.Sc2ySwM_362.2904 Anthoceros agrestis HOM05D007070 ORTHO05D008892 6.7e-47 191.4 150 60.7
HPP92_018595 Vanilla planifolia HOM05D007070 ORTHO05D008892 6.7e-47 191.4 190 55.8
SEGI_28311 Sequoiadendron giganteum HOM05D007070 ORTHO05D008892 1.3e-45 187.2 121 72.7
unitig_699.g19919 Utricularia gibba HOM05D007070 ORTHO05D008892 1.3e-45 187.2 146 66.4
SMO329G0045 Selaginella moellendorffii HOM05D007070 ORTHO05D008892 3.7e-45 185.7 133 66.9
Zm00001eb402240 Zea mays HOM05D007070 ORTHO05D008892 1.4e-44 183.7 118 72.9
Os03g0170500 Oryza sativa ssp. japonica HOM05D007070 ORTHO05D008892 4.1e-44 182.2 118 73.7
Mapoly0002s0258 Marchantia polymorpha HOM05D007070 ORTHO05D008892 7.0e-44 181.4 136 64.7
BcaC05g25332 Brassica carinata HOM05D007070 ORTHO05D008892 7.7e-43 177.9 143 69.2
CBR_g47945 Chara braunii HOM05D007070 ORTHO05D008892 1.6e-35 153.7 132 53.8
Sc04g0008340 Simmondsia chinensis HOM05D007070 ORTHO05D008892 1.9e-33 146.7 191 51.3
AUR62028813 Chenopodium quinoa HOM05D007070 ORTHO05D008892 3.4e-30 136.0 138 57.2
Cre08.g358540 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 6.4e-21 105.1 134 36.6
MCO16G462 Micromonas commoda HOM05D007070 ORTHO05D008892 4.3e-17 92.4 112 39.3
PRCOL_00004582 Prasinoderma coloniale HOM05D007070 ORTHO05D008892 8.0e-16 88.2 110 42.7
Atru.chr2.2148 Acer truncatum HOM05D007070 ORTHO05D008892 3.4e-14 82.8 45 82.2
Cre07.g321300 Chlamydomonas reinhardtii HOM05D007070 ORTHO05D008892 8.3e-13 78.2 135 30.4


User provided reference genes

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