Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g010280.3 Solanum lycopersicum HOM05D011975 ORTHO05D001736 4.4e-178 628.2 334 100.0
Sopen01g005900 Solanum pennellii HOM05D011975 ORTHO05D001736 6.9e-171 604.4 332 97.3
PGSC0003DMG400021892 Solanum tuberosum HOM05D011975 ORTHO05D001736 7.2e-120 434.9 307 79.8
CAN.G1377.3 Capsicum annuum HOM05D011975 ORTHO05D001736 1.8e-91 340.5 339 63.1
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.6e-87 327.4 333 61.6
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 7.3e-72 275.4 332 55.4
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 4.9e-68 262.7 315 54.6
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 1.6e-42 177.9 323 43.0
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 2.1e-42 177.6 302 44.4
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 7.9e-42 175.6 351 40.5
PGSC0003DMG400017799 Solanum tuberosum HOM05D011975 ORTHO05D001736 1.8e-22 111.3 288 37.2
Solyc04g005410.3 Solanum lycopersicum HOM05D001391 ORTHO05D002605 9.0e-22 109.0 314 36.0
Sopen04g001390 Solanum pennellii HOM05D011975 ORTHO05D001736 1.8e-17 94.7 297 34.3
Dinv34065 Davidia involucrata HOM05D003787 ORTHO05D001736 9.1e-14 82.4 354 28.2
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.2e-13 82.0 89 52.8
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 3.4e-13 80.5 97 52.6
Oeu004587.1 Olea europaea HOM05D011975 ORTHO05D001736 4.5e-13 80.1 205 38.0
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 5.9e-13 79.7 164 37.2
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 1.3e-12 78.6 206 36.9
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 1.7e-12 78.2 216 35.6
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 5.0e-12 76.6 198 35.9
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 6.5e-12 76.3 289 31.8
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.1e-11 75.5 96 46.9
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 4.2e-11 73.6 207 36.2
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 4.2e-11 73.6 341 30.2
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 4.2e-11 73.6 113 45.1
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 5.5e-11 73.2 133 42.1
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 7.2e-11 72.8 140 40.0
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 2.1e-10 71.2 105 45.7
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 3.6e-10 70.5 217 32.7
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 3.6e-10 70.5 117 41.0
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 4.7e-10 70.1 158 41.1
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.7e-10 70.1 158 41.1
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.4e-09 68.6 128 43.0
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.8e-09 68.2 75 50.7
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 2.3e-09 67.8 321 29.6
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 8.8e-09 65.9 200 34.5
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 8.8e-09 65.9 141 41.1
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.1e-08 65.5 206 33.5
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 2.0e-08 64.7 250 32.8
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.0e-08 64.7 302 28.8
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 2.6e-08 64.3 212 32.5
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.7e-08 63.2 284 30.6
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 7.4e-08 62.8 317 29.7
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 7.4e-08 62.8 92 47.8
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 1.3e-07 62.0 173 38.2
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 1.3e-07 62.0 304 31.9
TPR.G24475 Trifolium pratense HOM05D003787 ORTHO05D000653 1.3e-07 62.0 94 44.7
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.7e-07 61.6 351 28.2
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 2.2e-07 61.2 93 45.2
DCAR_030042 Daucus carota HOM05D003787 ORTHO05D001736 2.2e-07 61.2 169 31.4
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.2e-07 61.2 56 58.9
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 2.8e-07 60.8 104 44.2
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 2.8e-07 60.8 89 46.1
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 2.8e-07 60.8 135 31.9
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 3.7e-07 60.5 271 34.7
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 3.7e-07 60.5 284 29.9
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 4.8e-07 60.1 52 59.6
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 4.8e-07 60.1 335 29.6
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 6.3e-07 59.7 65 58.5
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 6.3e-07 59.7 101 40.6
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 6.3e-07 59.7 229 32.8
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 8.2e-07 59.3 85 43.5
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 8.2e-07 59.3 302 29.5
AL5G13410 Arabidopsis lyrata HOM05D006637 ORTHO05D001736 1.1e-06 58.9 65 55.4
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 1.1e-06 58.9 204 34.3
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 1.4e-06 58.5 80 47.5
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 2.4e-06 57.8 77 46.8
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 2.4e-06 57.8 83 42.2
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 3.1e-06 57.4 232 31.5
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 4.1e-06 57.0 66 47.0
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 4.1e-06 57.0 270 29.6
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 5.3e-06 56.6 50 58.0
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 7.0e-06 56.2 123 40.7
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 9.1e-06 55.8 80 43.8
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 9.1e-06 55.8 80 43.8
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 9.1e-06 55.8 80 43.8
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 9.1e-06 55.8 80 43.8
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 9.1e-06 55.8 51 49.0
Peaxi162Scf00451g00113 Petunia axillaris HOM05D003787 ORTHO05D001736 9.1e-06 55.8 74 45.9


User provided reference genes

Program Settings