Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g010215.1 Solanum lycopersicum HOM05D010760 ORTHO05D014669 3.1e-97 358.6 198 100.0
Sopen01g005810 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-63 245.7 144 92.4
PGSC0003DMG400021884 Solanum tuberosum HOM05D010760 ORTHO05D014669 1.4e-44 183.7 199 56.8
Solyc01g010185.1 Solanum lycopersicum HOM05D010760 ORTHO05D014669 2.5e-38 162.9 200 50.5
Solyc01g010220.3 Solanum lycopersicum HOM05D010760 ORTHO05D014669 7.0e-25 118.2 150 46.7
Nitab4.5_0000509g0070 Nicotiana tabacum HOM05D010760 ORTHO05D014669 5.9e-24 115.2 103 58.3
Nitab4.5_0001118g0110 Nicotiana tabacum HOM05D010760 ORTHO05D014669 3.8e-23 112.5 174 43.1
Sopen01g005790 Solanum pennellii HOM05D010760 ORTHO05D014669 1.1e-22 110.9 94 62.8
PGSC0003DMG400021883 Solanum tuberosum HOM05D010760 ORTHO05D014669 1.5e-22 110.5 134 49.3
PGSC0003DMG400021886 Solanum tuberosum HOM05D010760 ORTHO05D014669 1.9e-22 110.2 155 47.7
Nitab4.5_0000509g0050 Nicotiana tabacum HOM05D010760 ORTHO05D014669 5.5e-22 108.6 115 53.9
Sopen01g005820 Solanum pennellii HOM05D010760 ORTHO05D014669 8.0e-21 104.8 144 45.1
Peaxi162Scf00026g00083 Petunia axillaris HOM05D010760 ORTHO05D014669 1.2e-19 100.9 164 39.0
Sopen01g005800 Solanum pennellii HOM05D010760 ORTHO05D014669 8.5e-15 84.7 135 45.2
Nitab4.5_0000305g0090 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.1e-14 84.3 87 48.3
Nitab4.5_0005846g0030 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.9e-14 83.6 87 48.3
Nitab4.5_0000871g0050 Nicotiana tabacum HOM05D002833 ORTHO05D003210 3.2e-14 82.8 108 41.7
Peaxi162Scf00023g01122 Petunia axillaris HOM05D010760 ORTHO05D000001 5.5e-14 82.0 87 48.3
Peaxi162Scf00202g00046 Petunia axillaris HOM05D002833 ORTHO05D003210 2.1e-13 80.1 108 42.6
Nitab4.5_0000523g0100 Nicotiana tabacum HOM05D002833 ORTHO05D000001 2.7e-13 79.7 72 56.9
Nitab4.5_0004147g0060 Nicotiana tabacum HOM05D002833 ORTHO05D000001 6.1e-13 78.6 87 46.0
Nitab4.5_0000164g0090 Nicotiana tabacum HOM05D002833 ORTHO05D003210 1.4e-12 77.4 87 47.1
Peaxi162Scf00031g00297 Petunia axillaris HOM05D010760 ORTHO05D003210 1.4e-12 77.4 118 38.1
Peaxi162Scf00019g00041 Petunia axillaris HOM05D002833 ORTHO05D000001 1.8e-12 77.0 94 46.8
Nitab4.5_0009589g0010 Nicotiana tabacum HOM05D010760 ORTHO05D003210 2.3e-12 76.6 91 46.2
Nitab4.5_0000498g0210 Nicotiana tabacum HOM05D002833 ORTHO05D000001 4.0e-12 75.9 87 47.1
Nitab4.5_0003766g0020 Nicotiana tabacum HOM05D002833 ORTHO05D000001 4.0e-12 75.9 87 46.0
Peaxi162Scf00460g00045 Petunia axillaris HOM05D002833 ORTHO05D000001 6.8e-12 75.1 84 47.6
Peaxi162Scf00026g00913 Petunia axillaris HOM05D010760 ORTHO05D014669 2.0e-11 73.6 139 36.7
Nitab4.5_0003362g0070 Nicotiana tabacum HOM05D002833 ORTHO05D000001 2.8e-10 69.7 81 46.9
Peaxi162Scf01254g00010 Petunia axillaris HOM05D015337 ORTHO05D019322 8.3e-10 68.2 56 58.9
Solyc02g061920.2 Solanum lycopersicum HOM05D002833 ORTHO05D003210 1.8e-09 67.0 116 32.8
Sopen01g021080 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen01g035850 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen02g003650 Solanum pennellii HOM05D002833 ORTHO05D003210 9.2e-09 64.7 122 31.1
Sopen02g020210 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen03g035230 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen04g026030 Solanum pennellii HOM05D000013 ORTHO05D000011 9.2e-09 64.7 122 31.1
Sopen06g001090 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen06g016120 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen06g023450 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen08g029170 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen09g028170 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
Sopen12g019720 Solanum pennellii HOM05D000002 ORTHO05D000001 9.2e-09 64.7 122 31.1
ECA236G1804 Erigeron canadensis HOM05D000031 ORTHO05D000001 2.0e-08 63.5 123 31.7
PGSC0003DMG400021882 Solanum tuberosum HOM05D042358 ORTHO05D037689 2.0e-08 63.5 64 59.4
Sopen00g009240 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-08 63.2 89 38.2
Sopen10g028380 Solanum pennellii HOM05D000002 ORTHO05D000001 2.7e-08 63.2 89 38.2
Solyc11g016945.1 Solanum lycopersicum HOM05D002833 ORTHO05D003210 3.5e-08 62.8 118 31.4
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.9e-08 62.0 94 36.2
AT5G48050 Arabidopsis thaliana HOM05D002833 ORTHO05D003210 1.0e-07 61.2 99 35.4
TPR.G529 Trifolium pratense HOM05D007933 ORTHO05D000001 1.0e-07 61.2 94 38.3
Sp4g03150 Schrenkiella parvula HOM05D002833 ORTHO05D003210 1.3e-07 60.8 96 35.4
THA.LOC109116961 Tarenaya hassleriana HOM05D002833 ORTHO05D003210 1.3e-07 60.8 105 33.3
AUR62023882 Chenopodium quinoa HOM05D002833 ORTHO05D003210 3.8e-07 59.3 89 32.6
AUR62037648 Chenopodium quinoa HOM05D002833 ORTHO05D003210 3.8e-07 59.3 119 31.9
TPR.G36530 Trifolium pratense HOM05D007933 ORTHO05D000001 3.8e-07 59.3 92 38.0
ECA233G0728 Erigeron canadensis HOM05D002833 ORTHO05D003210 6.6e-07 58.5 96 35.4
Ah.14g080650 Amaranthus hybridus HOM05D002833 ORTHO05D003210 8.6e-07 58.2 100 33.0
Psat6g037960 Pisum sativum HOM05D008404 ORTHO05D000001 1.1e-06 57.8 97 34.0
Nitab4.5_0000061g0370 Nicotiana tabacum HOM05D002833 ORTHO05D000001 1.9e-06 57.0 87 39.1
ECA233G3460 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.5e-06 56.6 123 28.5
Nitab4.5_0007140g0030 Nicotiana tabacum HOM05D010760 ORTHO05D000001 3.3e-06 56.2 70 40.0
THA.LOC109116033 Tarenaya hassleriana HOM05D002833 ORTHO05D003210 3.3e-06 56.2 105 30.5
VMungo0464G1997 Vigna mungo HOM05D002833 ORTHO05D003210 3.3e-06 56.2 93 36.6
Nitab4.5_0003319g0020 Nicotiana tabacum HOM05D002833 ORTHO05D000001 4.3e-06 55.8 50 56.0
RcHm_v2.0_Chr5g0038991 Rosa chinensis HOM05D000002 ORTHO05D000001 4.3e-06 55.8 77 37.7
TWI39G0276 Tripterygium wilfordii HOM05D010760 ORTHO05D000001 4.3e-06 55.8 64 43.8
ECA240G2389 Erigeron canadensis HOM05D000002 ORTHO05D003210 5.6e-06 55.5 92 34.8
GSVIVG01036343001 Vitis vinifera HOM05D000067 ORTHO05D000097 5.6e-06 55.5 95 34.7
Nitab4.5_0005858g0080 Nicotiana tabacum HOM05D010760 ORTHO05D000001 7.3e-06 55.1 80 37.5
Lalb_Chr09g0335481 Lupinus albus HOM05D002833 ORTHO05D003210 9.5e-06 54.7 82 35.4


User provided reference genes

Program Settings