Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 0.0e+00 1161.0 597 100.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 9.4e-283 976.5 570 88.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.3e-281 971.8 567 89.2
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.4e-280 967.6 553 90.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.7e-268 929.1 566 83.9
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 5.5e-267 924.1 566 83.6
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.9e-261 904.0 621 77.1
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.2e-260 902.1 583 80.3
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.2e-259 897.9 566 81.3
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 8.0e-258 893.6 556 82.9
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 9.2e-246 853.6 568 77.1
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 1.2e-245 853.2 568 77.3
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.3e-244 849.0 570 77.0
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 3.8e-244 848.2 587 75.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 7.3e-243 844.0 564 77.5
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.4e-241 839.7 551 77.9
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.0e-241 838.2 551 77.5
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.8e-241 837.4 551 77.5
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.7e-239 832.8 567 75.3
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 2.9e-239 832.0 561 75.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 8.3e-239 830.5 568 75.7
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.1e-238 828.2 558 76.0
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 7.0e-238 827.4 562 74.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.5e-237 825.1 558 75.6
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.0e-236 823.5 570 74.4
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.3e-236 823.2 567 74.6
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 3.9e-236 821.6 551 76.8
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.1e-235 820.1 568 74.5
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.1e-235 820.1 558 76.5
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.5e-235 819.7 561 75.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.5e-235 818.9 560 76.1
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 4.3e-235 818.1 559 76.7
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 7.3e-235 817.4 603 71.8
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.2e-234 816.6 564 74.3
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.1e-234 815.8 556 74.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 5.2e-233 811.2 558 76.2
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.2e-233 811.2 562 73.7
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.5e-232 809.7 552 75.4
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 7.5e-232 807.4 556 74.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.7e-231 806.2 551 74.4
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.2e-231 805.8 550 74.5
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.7e-231 805.1 550 74.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 4.9e-231 804.7 570 73.5
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.9e-231 804.7 569 73.3
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.9e-230 802.7 562 72.1
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 4.1e-230 801.6 558 72.9
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 5.4e-230 801.2 558 73.1
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 7.0e-230 800.8 566 73.0
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 7.0e-230 800.8 566 73.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.2e-230 800.4 559 75.1
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 1.2e-229 800.0 559 75.1
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.7e-229 798.9 550 74.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.7e-229 798.9 568 71.8
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.5e-229 798.5 559 75.1
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 4.6e-229 798.1 575 72.2
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.0e-229 797.7 568 72.5
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 6.0e-229 797.7 562 71.9
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 7.8e-229 797.3 558 72.8
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.0e-228 797.0 558 72.4
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.0e-228 797.0 563 71.4
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.0e-228 797.0 602 70.3
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.0e-228 797.0 562 71.9
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.3e-228 796.6 619 68.5
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.3e-228 796.6 568 72.4
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-228 796.6 563 73.4
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.7e-228 796.2 568 72.5
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.6e-228 794.3 558 72.4
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 6.6e-228 794.3 560 72.9
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 6.6e-228 794.3 553 73.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.5e-227 793.1 553 73.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 2.5e-227 792.3 559 72.3
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 4.3e-227 791.6 571 73.9
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 7.3e-227 790.8 558 72.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.2e-226 790.0 560 73.4
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 6.2e-226 787.7 563 70.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 8.1e-226 787.3 562 72.2
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 8.1e-226 787.3 566 70.7
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.1e-225 786.9 563 72.3
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.1e-225 786.9 574 73.0
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.4e-225 786.6 576 72.4
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 2.3e-225 785.8 587 71.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 3.1e-225 785.4 560 70.5
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.0e-225 785.0 558 72.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.0e-225 785.0 590 68.5
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 5.2e-225 784.6 562 72.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 1.2e-224 783.5 563 70.7
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.5e-224 783.1 558 72.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 2.0e-224 782.7 556 71.6
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-223 779.6 563 71.6
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 2.2e-223 779.2 569 71.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 2.9e-223 778.9 566 70.0
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.4e-223 777.7 572 71.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.1e-222 776.9 574 71.3
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 4.1e-222 775.0 548 73.0
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 5.4e-222 774.6 563 71.2
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 5.4e-222 774.6 563 71.2
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 2.1e-221 772.7 566 70.7
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.5e-221 771.9 563 70.9
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 1.7e-220 769.6 559 70.8
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 3.0e-220 768.8 560 70.4
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 8.6e-220 767.3 558 70.1
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 2.5e-219 765.8 527 73.8
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 6.2e-218 761.1 535 72.1
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 6.8e-217 757.7 535 72.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.8e-216 754.6 571 68.1
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.9e-215 751.5 533 71.5
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 6.4e-215 751.1 565 69.7
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.1e-214 748.4 556 69.4
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 9.6e-211 737.3 641 61.8
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 3.1e-209 732.3 517 70.6
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.5e-208 729.9 603 64.2
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 3.4e-208 728.8 546 67.9
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.1e-206 723.8 583 66.0
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 2.1e-205 719.5 544 65.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.3e-203 711.1 478 74.5
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 5.8e-200 701.4 433 81.8
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 5.8e-200 701.4 546 65.2
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 3.5e-197 692.2 556 66.9
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.2e-192 677.2 553 64.9
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.3e-191 673.7 474 73.8
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 3.3e-187 659.1 548 60.9
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.4e-185 652.9 479 70.6
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 3.4e-184 649.0 341 96.5
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 2.9e-183 646.0 548 59.9
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.9e-183 646.0 496 64.1
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.1e-177 627.5 558 58.2
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.2e-166 588.2 407 72.0
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 1.7e-159 567.0 359 81.6
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 8.0e-157 558.1 400 70.5
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.0e-156 556.2 400 70.2
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 8.8e-156 554.7 400 70.2
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.2e-147 527.7 370 71.6
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 3.5e-144 516.2 549 49.7
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 2.9e-143 513.1 346 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 7.5e-131 471.9 532 46.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 4.1e-113 412.9 272 76.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.9e-95 353.2 220 79.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 5.2e-92 342.8 194 85.6
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.4e-81 308.1 200 82.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.1e-65 255.4 195 67.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 3.7e-61 240.4 152 80.3
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.5e-57 227.6 147 80.3
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 2.9e-50 204.1 117 86.3
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 6.5e-50 203.0 189 63.5
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.6e-48 197.2 141 71.6
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.1e-28 132.5 85 83.5
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 4.0e-23 114.0 98 66.3
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.4e-20 105.5 92 58.7
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 9.1e-20 102.8 109 51.4
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.5e-19 100.9 82 51.2
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 4.2e-17 94.0 99 47.5
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 4.0e-15 87.4 85 56.5
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 9.5e-09 66.2 110 38.2
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.2e-08 65.9 53 58.5


User provided reference genes

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