Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 2.0e-59 232.3 121 100.0
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 8.0e-48 193.7 103 100.0
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 8.0e-48 193.7 103 100.0
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 5.7e-46 187.6 103 97.1
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.2e-45 185.7 103 95.1
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 2.2e-45 185.7 103 94.2
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 2.2e-45 185.7 103 94.2
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 2.8e-45 185.3 103 94.2
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 4.8e-45 184.5 103 93.2
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 4.8e-45 184.5 103 93.2
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 4.8e-45 184.5 104 94.2
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 6.3e-45 184.1 103 94.2
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 6.3e-45 184.1 103 93.2
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 6.3e-45 184.1 103 94.2
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 8.3e-45 183.7 103 93.2
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.1e-44 183.3 103 93.2
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 1.1e-44 183.3 103 92.2
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 1.1e-44 183.3 103 92.2
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 1.4e-44 183.0 103 93.2
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 1.4e-44 183.0 104 92.3
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.4e-44 183.0 110 87.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 1.8e-44 182.6 103 90.3
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 1.8e-44 182.6 103 93.2
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.8e-44 182.6 103 92.2
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.8e-44 182.6 103 92.2
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 1.8e-44 182.6 103 92.2
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 90.3
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 91.3
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 91.3
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 91.3
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 93.2
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 2.4e-44 182.2 104 93.3
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 2.4e-44 182.2 103 92.2
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 3.1e-44 181.8 103 89.3
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 3.1e-44 181.8 103 91.3
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 3.1e-44 181.8 103 91.3
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 4.1e-44 181.4 103 91.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 5.4e-44 181.0 103 90.3
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 5.4e-44 181.0 103 90.3
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 5.4e-44 181.0 103 91.3
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 5.4e-44 181.0 103 90.3
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 91.3
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 90.3
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 93.2
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 91.3
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 91.3
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 7.0e-44 180.6 103 91.3
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 90.3
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 90.3
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 90.3
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 90.3
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 91.3
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 9.1e-44 180.3 103 91.3
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.2e-43 179.9 103 91.3
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.2e-43 179.9 103 91.3
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.2e-43 179.9 103 89.3
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 1.2e-43 179.9 103 90.3
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 1.2e-43 179.9 103 88.3
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.0e-43 179.1 103 90.3
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.0e-43 179.1 103 89.3
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 90.3
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 90.3
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 90.3
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 89.3
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 90.3
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 90.3
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 2.7e-43 178.7 103 89.3
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 3.5e-43 178.3 103 90.3
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 3.5e-43 178.3 103 90.3
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 3.5e-43 178.3 103 89.3
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 88.3
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 88.3
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 88.3
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 89.3
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 4.5e-43 177.9 103 88.3
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 5.9e-43 177.6 103 89.3
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 7.7e-43 177.2 103 89.3
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 7.7e-43 177.2 103 90.3
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 7.7e-43 177.2 103 86.4
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 7.7e-43 177.2 103 87.4
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 7.7e-43 177.2 103 89.3
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.0e-42 176.8 103 87.4
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 1.0e-42 176.8 103 88.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 1.0e-42 176.8 103 86.4
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.3e-42 176.4 103 88.3
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.3e-42 176.4 103 88.3
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.3e-42 176.4 103 88.3
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 1.3e-42 176.4 102 88.2
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 1.7e-42 176.0 103 89.3
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 1.7e-42 176.0 103 89.3
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.7e-42 176.0 103 91.3
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 2.2e-42 175.6 104 88.5
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.2e-42 175.6 103 87.4
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 2.2e-42 175.6 103 86.4
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 2.2e-42 175.6 106 83.0
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.2e-42 175.6 103 87.4
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 2.9e-42 175.3 103 88.3
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.9e-42 175.3 102 88.2
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 3.8e-42 174.9 103 87.4
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 5.0e-42 174.5 102 88.2
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 5.0e-42 174.5 103 86.4
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 5.0e-42 174.5 103 86.4
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.0e-42 174.5 104 87.5
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 6.5e-42 174.1 103 86.4
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 6.5e-42 174.1 103 86.4
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 8.5e-42 173.7 102 87.3
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 8.5e-42 173.7 103 87.4
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 1.1e-41 173.3 103 85.4
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 1.1e-41 173.3 102 88.2
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.9e-41 172.6 103 83.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 1.9e-41 172.6 101 89.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 2.5e-41 172.2 103 85.4
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 3.2e-41 171.8 103 84.5
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 3.2e-41 171.8 103 85.4
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 4.2e-41 171.4 103 83.5
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 7.2e-41 170.6 103 83.5
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 1.2e-40 169.9 103 82.5
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.6e-40 169.5 104 82.7
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 2.8e-40 168.7 103 83.5
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 1.4e-39 166.4 103 82.5
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 8.8e-39 163.7 95 89.5
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 5.7e-38 161.0 103 81.6
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 3.1e-36 155.2 104 76.0
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 5.9e-35 151.0 96 79.2
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 3.8e-34 148.3 83 90.4
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 5.0e-34 147.9 104 76.0
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-33 146.7 103 73.8
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 1.9e-33 146.0 83 89.2
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 3.6e-32 141.7 104 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.0e-31 140.2 104 74.0
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.4e-31 139.8 83 86.7
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 3.0e-31 138.7 104 73.1
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.7e-27 125.6 77 80.5
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 9.5e-25 117.1 79 78.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.5e-17 92.4 63 74.6
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 2.1e-11 72.8 39 97.4
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 4.7e-08 61.6 128 36.7


User provided reference genes

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