Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 1.4e-54 216.1 116 100.0
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.5e-53 211.5 116 97.4
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 9.4e-46 186.8 116 87.9
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 1.8e-41 172.6 118 82.2
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 2.2e-34 149.1 118 73.7
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 8.2e-26 120.6 116 62.9
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 9.4e-14 80.5 84 57.1
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.2e-11 73.6 94 50.0
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.0e-11 72.8 119 44.5
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 9.8e-11 70.5 119 42.0
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.7e-10 69.7 116 45.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 2.8e-10 68.9 114 40.4
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.8e-10 68.9 121 43.0
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.7e-10 68.6 116 40.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 6.3e-10 67.8 118 44.1
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 6.3e-10 67.8 116 38.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.3e-10 67.8 119 46.2
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 8.3e-10 67.4 80 50.0
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.1e-09 67.0 117 44.4
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 1.1e-09 67.0 115 39.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 1.4e-09 66.6 62 51.6
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.4e-09 66.6 117 44.4
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.4e-09 66.6 120 45.0
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 2.4e-09 65.9 119 41.2
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.4e-09 65.9 115 40.0
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 3.1e-09 65.5 71 54.9
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 3.1e-09 65.5 120 41.7
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 4.1e-09 65.1 117 43.6
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 4.1e-09 65.1 116 40.5
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.1e-09 65.1 113 40.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 5.4e-09 64.7 96 46.9
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 7.0e-09 64.3 117 45.3
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 7.0e-09 64.3 116 39.7
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 7.0e-09 64.3 116 38.8
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 7.0e-09 64.3 121 41.3
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 7.0e-09 64.3 117 41.9
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 9.1e-09 63.9 120 40.8
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 9.1e-09 63.9 118 44.9
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.2e-08 63.5 120 40.8
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.2e-08 63.5 126 43.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 1.6e-08 63.2 118 41.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-08 62.8 119 42.9
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.0e-08 62.8 119 42.9
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.0e-08 62.8 41 73.2
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 2.0e-08 62.8 41 73.2
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 2.0e-08 62.8 119 43.7
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 2.7e-08 62.4 118 41.5
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 2.7e-08 62.4 118 42.4
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 2.7e-08 62.4 117 40.2
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 4.5e-08 61.6 115 40.9
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 4.5e-08 61.6 115 42.6
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 4.5e-08 61.6 118 39.8
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.9e-08 61.2 117 39.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 5.9e-08 61.2 118 41.5
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 5.9e-08 61.2 93 49.5
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 7.7e-08 60.8 38 76.3
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 7.7e-08 60.8 118 40.7
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 7.7e-08 60.8 122 41.0
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.7e-08 60.8 118 40.7
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 7.7e-08 60.8 114 40.4
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 7.7e-08 60.8 115 40.0
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.0e-07 60.5 38 73.7
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.0e-07 60.5 121 43.0
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.3e-07 60.1 121 43.0
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.3e-07 60.1 116 42.2
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.3e-07 60.1 117 35.9
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.3e-07 60.1 116 41.4
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.7e-07 59.7 121 41.3
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.7e-07 59.7 66 59.1
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.7e-07 59.7 36 77.8
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.7e-07 59.7 75 46.7
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.7e-07 59.7 116 40.5
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 2.3e-07 59.3 118 39.8
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.3e-07 59.3 122 38.5
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 2.3e-07 59.3 116 39.7
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 2.3e-07 59.3 39 69.2
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 2.3e-07 59.3 38 76.3
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.3e-07 59.3 39 69.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 2.3e-07 59.3 94 43.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.9e-07 58.9 117 38.5
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.9e-07 58.9 120 36.7
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 2.9e-07 58.9 71 46.5
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.9e-07 58.9 80 46.2
Aqoxy1G00277 Aquilegia oxysepala HOM05D004268 ORTHO05D004958 3.8e-07 58.5 38 71.1
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 3.8e-07 58.5 120 38.3
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 3.8e-07 58.5 120 38.3
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 3.8e-07 58.5 119 40.3
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 3.8e-07 58.5 42 64.3
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 5.0e-07 58.2 68 51.5
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 5.0e-07 58.2 89 44.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 6.6e-07 57.8 90 42.2
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 6.6e-07 57.8 37 75.7
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 8.6e-07 57.4 118 40.7
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 8.6e-07 57.4 118 40.7
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 8.6e-07 57.4 118 40.7
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.6e-07 57.4 78 46.2
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 8.6e-07 57.4 116 38.8
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 8.6e-07 57.4 119 41.2
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 8.6e-07 57.4 38 68.4
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 8.6e-07 57.4 116 36.2
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 8.6e-07 57.4 114 41.2
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-06 57.0 89 50.6
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.1e-06 57.0 113 39.8
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.9e-06 56.2 114 41.2
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 1.9e-06 56.2 84 42.9
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 2.5e-06 55.8 79 48.1
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.5e-06 55.8 123 34.1
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.5e-06 55.8 120 37.5
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.5e-06 55.8 117 37.6
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 2.5e-06 55.8 86 44.2
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 2.5e-06 55.8 119 37.8
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 3.3e-06 55.5 39 74.4
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 4.2e-06 55.1 117 37.6
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 4.2e-06 55.1 120 39.2
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 4.2e-06 55.1 121 41.3
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 7.2e-06 54.3 115 39.1
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 7.2e-06 54.3 40 70.0
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 7.2e-06 54.3 37 64.9
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 9.5e-06 53.9 115 35.7
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 9.5e-06 53.9 115 35.7
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 9.5e-06 53.9 115 35.7


User provided reference genes

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