Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.6e-72 275.4 148 100.0
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.6e-72 275.4 148 100.0
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 3.7e-71 271.6 148 98.6
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 1.4e-70 269.6 148 97.3
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.3e-68 263.1 141 97.9
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 5.9e-61 237.7 138 87.7
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 5.9e-61 237.7 143 86.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 7.7e-61 237.3 140 86.4
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 7.7e-61 237.3 147 83.7
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.7e-60 236.1 145 83.4
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 2.2e-60 235.7 148 81.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 2.9e-60 235.3 141 85.8
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.9e-60 235.3 141 84.4
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 2.9e-60 235.3 142 84.5
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 5.0e-60 234.6 143 83.9
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 6.5e-60 234.2 147 81.6
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.9e-59 232.6 141 85.1
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 2.5e-59 232.3 142 82.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 2.5e-59 232.3 138 86.2
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 4.2e-59 231.5 145 82.1
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 5.5e-59 231.1 145 82.1
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 2.7e-58 228.8 143 80.4
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 2.7e-58 228.8 142 81.7
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 4.7e-58 228.0 147 81.0
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 4.7e-58 228.0 141 83.7
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 4.7e-58 228.0 136 86.0
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 8.0e-58 227.3 143 81.1
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 8.0e-58 227.3 141 83.0
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 1.0e-57 226.9 139 82.7
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 1.0e-57 226.9 140 81.4
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.4e-57 226.5 138 84.8
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 1.4e-57 226.5 141 82.3
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.8e-57 226.1 139 83.5
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.8e-57 226.1 139 84.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 2.3e-57 225.7 139 83.5
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 2.3e-57 225.7 139 83.5
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 3.0e-57 225.3 139 83.5
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 3.0e-57 225.3 141 80.9
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 3.0e-57 225.3 127 93.7
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 6.7e-57 224.2 142 78.9
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 6.7e-57 224.2 140 81.4
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 6.7e-57 224.2 140 80.7
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 6.7e-57 224.2 140 80.7
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 6.7e-57 224.2 140 80.0
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 6.7e-57 224.2 145 77.9
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 6.7e-57 224.2 148 84.5
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 8.8e-57 223.8 140 80.0
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 8.8e-57 223.8 140 80.7
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 8.8e-57 223.8 140 80.7
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 8.8e-57 223.8 140 80.7
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 8.8e-57 223.8 147 78.2
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 8.8e-57 223.8 139 82.0
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 1.2e-56 223.4 137 83.9
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.6e-56 222.2 143 81.1
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.6e-56 222.2 140 80.0
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 145 78.6
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 2.6e-56 222.2 145 78.6
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.3e-56 221.9 140 79.3
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 3.3e-56 221.9 137 83.9
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 4.4e-56 221.5 140 80.0
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 4.4e-56 221.5 140 80.0
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 4.4e-56 221.5 141 80.1
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.7e-56 221.1 139 81.3
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 5.7e-56 221.1 139 81.3
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 5.7e-56 221.1 139 81.3
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 5.7e-56 221.1 140 80.7
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 9.7e-56 220.3 173 69.9
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 9.7e-56 220.3 141 79.4
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 9.7e-56 220.3 138 82.6
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 3.7e-55 218.4 138 79.7
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 3.7e-55 218.4 137 80.3
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-55 218.0 139 78.4
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 6.3e-55 217.6 140 77.9
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.3e-55 217.6 139 78.4
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 6.3e-55 217.6 137 80.3
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.1e-54 216.9 144 77.8
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 1.4e-54 216.5 138 79.7
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 2.4e-54 215.7 143 78.3
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 2.4e-54 215.7 138 78.3
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.4e-54 215.7 137 81.0
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 3.1e-54 215.3 140 76.4
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 4.1e-54 214.9 142 76.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 5.3e-54 214.5 139 77.7
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 5.3e-54 214.5 145 77.2
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.3e-54 214.5 138 76.8
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 1.6e-53 213.0 150 74.0
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-53 213.0 138 75.4
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-53 212.2 138 75.4
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.7e-53 212.2 138 75.4
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 4.5e-53 211.5 135 79.3
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 4.5e-53 211.5 147 72.8
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 4.5e-53 211.5 146 74.0
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 7.7e-53 210.7 146 75.3
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.0e-52 210.3 138 75.4
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 1.3e-52 209.9 147 74.1
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 2.2e-52 209.1 146 75.3
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 2.9e-52 208.8 183 63.9
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 2.9e-52 208.8 141 75.9
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 2.9e-52 208.8 186 63.4
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 6.5e-52 207.6 192 60.9
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 1.5e-51 206.5 146 71.9
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.5e-51 206.5 143 75.5
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 3.2e-51 205.3 118 89.0
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 4.2e-51 204.9 208 58.2
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 5.5e-51 204.5 116 88.8
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 7.2e-51 204.1 121 86.8
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 8.0e-50 200.7 115 87.8
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 1.4e-49 199.9 121 83.5
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 1.4e-49 199.9 213 55.9
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 5.2e-49 198.0 155 68.4
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.0e-48 196.1 140 74.3
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 3.4e-48 195.3 138 71.0
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 4.4e-48 194.9 125 77.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.4e-48 194.9 138 71.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 7.5e-48 194.1 118 84.7
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.3e-47 193.4 120 81.7
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 2.8e-47 192.2 116 83.6
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.1e-46 190.3 138 69.6
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-46 188.7 115 82.6
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 3.1e-46 188.7 115 82.6
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 4.1e-46 188.3 227 52.4
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 5.4e-46 188.0 115 82.6
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 9.1e-46 187.2 115 81.7
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.6e-45 186.4 120 79.2
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.5e-45 184.9 142 65.5
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 7.7e-45 184.1 115 80.9
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.0e-44 183.7 115 80.9
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.3e-44 183.3 115 80.0
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.7e-44 183.0 115 80.0
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 2.3e-44 182.6 142 59.9
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-43 179.9 109 82.6
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-43 179.9 109 82.6
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.6e-42 176.4 114 77.2
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.0e-41 173.7 138 60.1
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 4.0e-41 171.8 146 60.3
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 4.9e-39 164.9 156 60.3
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 1.1e-38 163.7 135 57.8
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 1.1e-35 153.7 91 87.9
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 2.8e-34 149.1 87 88.5
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.8e-33 146.4 99 77.8
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 1.3e-31 140.2 96 83.3
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.2e-29 133.7 200 43.5
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.0e-29 131.3 82 74.4
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 8.6e-28 127.5 134 55.2
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.9e-27 126.3 140 44.3
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.1e-26 122.9 145 40.7
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 1.1e-25 120.6 70 85.7
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-25 118.6 71 87.3
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 4.0e-25 118.6 71 87.3
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 2.0e-24 116.3 76 72.4
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 2.6e-24 115.9 71 84.5
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.4e-22 109.4 64 87.5
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 6.0e-21 104.8 65 84.6
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.3e-19 97.8 65 72.3
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 7.3e-19 97.8 65 72.3
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.9e-17 90.9 66 75.8
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.4e-16 89.0 65 63.1
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 3.4e-16 89.0 144 32.6
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 5.8e-16 88.2 66 74.2
Oeu013194.1 Olea europaea HOM05D004221 ORTHO05D004998 3.7e-15 85.5 52 80.8
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 1.1e-14 84.0 57 77.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 1.2e-13 80.5 135 31.1
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.5e-11 72.8 53 62.3
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-10 70.1 49 75.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.6e-10 70.1 49 75.5
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 2.2e-07 59.7 47 70.2


User provided reference genes

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