Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.6e-109 397.1 194 100.0
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.7e-79 299.7 164 89.6
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.2e-75 285.4 187 76.5
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.6e-74 282.0 187 75.4
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 1.8e-73 279.6 188 72.9
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 8.8e-65 250.8 191 63.9
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 1.5e-64 250.0 191 64.4
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.6e-64 249.2 191 63.9
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 3.4e-64 248.8 191 63.9
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 3.4e-64 248.8 191 63.9
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 3.5e-61 238.8 193 64.2
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 7.7e-61 237.7 195 63.1
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 1.0e-60 237.3 193 62.2
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 1.7e-60 236.5 197 60.9
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 1.7e-60 236.5 195 62.6
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 3.8e-60 235.3 191 60.7
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 5.0e-60 235.0 191 60.7
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 6.5e-60 234.6 194 63.4
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 1.5e-59 233.4 195 61.0
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 1.5e-59 233.4 195 61.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 1.5e-59 233.4 195 61.0
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 2.5e-59 232.6 195 61.5
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 3.2e-59 232.3 199 60.8
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 3.2e-59 232.3 193 61.1
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.2e-59 231.9 193 60.6
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 5.5e-59 231.5 194 62.4
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 5.5e-59 231.5 195 61.5
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 7.2e-59 231.1 195 60.0
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 7.2e-59 231.1 197 59.9
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 1.2e-58 230.3 193 60.1
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 1.2e-58 230.3 194 61.3
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 1.6e-58 229.9 193 61.1
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 2.1e-58 229.6 195 60.0
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 3.6e-58 228.8 193 61.1
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 4.7e-58 228.4 200 59.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 6.1e-58 228.0 196 60.2
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 6.1e-58 228.0 197 58.4
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 6.1e-58 228.0 197 59.9
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 8.0e-58 227.6 194 59.3
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.0e-57 227.3 191 58.6
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.4e-57 226.9 193 59.6
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 1.4e-57 226.9 196 60.7
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 1.8e-57 226.5 191 58.6
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 1.8e-57 226.5 193 60.6
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.3e-57 226.1 195 59.5
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 2.3e-57 226.1 200 58.5
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 4.0e-57 225.3 197 57.9
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 4.0e-57 225.3 193 61.1
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 4.0e-57 225.3 195 60.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 5.2e-57 224.9 193 60.6
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 8.8e-57 224.2 196 57.1
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.2e-56 223.8 197 57.9
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 2.0e-56 223.0 195 59.0
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 2.6e-56 222.6 197 56.3
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 2.6e-56 222.6 200 57.5
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 2.6e-56 222.6 198 59.6
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 3.4e-56 222.2 195 59.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 3.4e-56 222.2 197 58.4
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 4.4e-56 221.9 198 58.1
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 4.4e-56 221.9 191 57.1
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 4.4e-56 221.9 191 57.6
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 4.4e-56 221.9 193 61.1
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 5.7e-56 221.5 193 59.6
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 5.7e-56 221.5 195 57.9
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 5.7e-56 221.5 197 57.4
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 7.5e-56 221.1 197 56.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 7.5e-56 221.1 199 58.8
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 1.3e-55 220.3 196 58.7
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.2e-55 219.5 199 57.3
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 2.2e-55 219.5 197 57.4
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 2.2e-55 219.5 197 57.4
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 3.7e-55 218.8 200 57.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.7e-55 218.8 195 57.4
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 4.9e-55 218.4 196 57.1
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.3e-55 217.6 196 56.6
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 8.3e-55 217.6 196 56.6
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 8.3e-55 217.6 195 57.4
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 8.3e-55 217.6 200 56.5
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 1.4e-54 216.9 200 55.5
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.4e-54 216.9 200 56.0
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.4e-54 216.9 199 57.3
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 2.4e-54 216.1 207 57.0
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 2.4e-54 216.1 196 56.1
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 3.1e-54 215.7 201 55.7
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 3.1e-54 215.7 194 57.2
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 4.1e-54 215.3 200 55.5
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 4.1e-54 215.3 201 57.7
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 5.4e-54 214.9 193 57.5
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.4e-54 214.9 196 58.2
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.4e-54 214.9 196 58.2
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 5.4e-54 214.9 200 55.0
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 7.0e-54 214.5 200 55.5
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 7.0e-54 214.5 196 57.7
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 9.2e-54 214.2 199 54.8
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 1.2e-53 213.8 200 55.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 1.6e-53 213.4 195 55.9
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 2.0e-53 213.0 201 54.2
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.5e-53 211.8 195 56.4
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 1.0e-52 210.7 199 55.3
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 3.8e-52 208.8 195 57.9
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 4.3e-51 205.3 198 54.5
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 4.3e-51 205.3 198 54.5
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 9.5e-51 204.1 221 51.1
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 1.2e-48 197.2 170 58.8
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.2e-47 193.0 183 54.1
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 1.8e-46 189.9 194 48.5
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 5.4e-46 188.3 191 53.4
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 5.9e-45 184.9 189 52.9
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 2.1e-42 176.4 159 59.1
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 2.8e-42 176.0 163 57.1
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 4.0e-41 172.2 200 45.5
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.1e-38 164.1 181 44.8
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 1.9e-38 163.3 195 48.2
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 1.3e-36 157.1 190 44.2
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.3e-36 156.4 154 52.6
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 1.5e-35 153.7 122 60.7
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 3.6e-34 149.1 138 57.2
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 5.2e-33 145.2 140 56.4
CAN.G282.51 Capsicum annuum HOM05D005624 ORTHO05D006896 1.7e-31 140.2 197 46.7
Migut.L00595 Erythranthe guttata HOM05D005624 ORTHO05D006896 2.9e-31 139.4 97 66.0
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 9.2e-30 134.4 145 53.8
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.6e-29 133.7 149 51.7
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 8.6e-28 127.9 124 56.5
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 9.5e-27 124.4 121 54.5
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.2e-26 124.0 121 54.5
Cre03.g189100 Chlamydomonas reinhardtii HOM05D005624 ORTHO05D006896 3.1e-25 119.4 196 34.2
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 3.2e-22 109.4 158 41.1
Cc10_g16310 Coffea canephora HOM05D005624 ORTHO05D006896 1.8e-17 93.6 75 58.7
SEGI_14660 Sequoiadendron giganteum HOM05D005624 ORTHO05D006896 1.8e-17 93.6 59 71.2
Cc08_g00010 Coffea canephora HOM05D005624 ORTHO05D006896 4.4e-16 89.0 75 56.0
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 5.4e-14 82.0 90 53.3
Cc06_g22650 Coffea canephora HOM05D005624 ORTHO05D006896 2.7e-13 79.7 75 56.0
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 6.9e-09 65.1 88 44.3
Dinv02968 Davidia involucrata HOM05D005624 ORTHO05D006896 2.6e-08 63.2 57 50.9


User provided reference genes

Program Settings