Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 3.4e-169 598.6 382 100.0
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.5e-153 546.6 358 98.0
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.8e-141 506.5 358 91.3
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.2e-107 393.3 367 72.5
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 2.4e-98 363.2 281 83.6
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 6.8e-93 345.1 344 67.4
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 4.4e-92 342.4 360 66.9
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 7.5e-92 341.7 366 65.0
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.7e-89 333.2 360 66.4
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.5e-89 332.4 339 68.1
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 4.5e-89 332.4 366 64.5
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 1.3e-88 330.9 287 77.7
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 5.0e-88 328.9 360 65.3
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 5.6e-87 325.5 358 65.6
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 5.6e-87 325.5 358 65.6
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.2e-86 324.3 287 76.3
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.8e-86 323.2 358 64.0
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 6.1e-86 322.0 354 66.1
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.0e-85 321.2 358 65.9
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.0e-85 321.2 282 76.2
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 1.4e-85 320.9 285 75.4
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 5.2e-85 318.9 364 64.0
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 6.8e-85 318.5 358 63.4
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 6.8e-85 318.5 356 63.5
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 3.4e-84 316.2 367 62.7
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 7.5e-84 315.1 358 65.1
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 9.8e-84 314.7 358 65.4
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.7e-83 313.9 358 64.2
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.7e-83 313.9 355 64.2
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 3.7e-83 312.8 283 75.6
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 3.7e-83 312.8 358 64.8
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 4.9e-83 312.4 286 74.1
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 4.9e-83 312.4 358 65.1
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 1.1e-82 311.2 381 59.3
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.1e-82 311.2 361 64.0
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 2.4e-82 310.1 287 74.2
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 9.2e-82 308.1 361 62.6
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 4.6e-81 305.8 286 74.1
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 4.6e-81 305.8 283 74.2
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 3.9e-80 302.8 358 62.3
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 5.0e-80 302.4 358 61.7
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 6.6e-80 302.0 285 73.7
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 1.1e-79 301.2 287 72.1
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 1.9e-79 300.4 285 74.7
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 2.5e-79 300.1 371 59.8
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 3.3e-79 299.7 282 73.4
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 4.3e-79 299.3 284 72.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 5.6e-79 298.9 285 74.4
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 9.5e-79 298.1 284 73.6
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 2.8e-78 296.6 285 72.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 3.6e-78 296.2 358 60.3
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 4.7e-78 295.8 284 73.2
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 6.2e-78 295.4 358 60.6
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 8.0e-78 295.0 288 71.5
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.0e-77 294.7 358 60.3
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 1.4e-77 294.3 360 60.8
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 8.9e-77 291.6 358 64.5
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 1.5e-76 290.8 283 66.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 2.0e-76 290.4 282 72.3
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 2.0e-76 290.4 283 70.7
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.6e-76 290.0 285 72.3
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 3.4e-76 289.7 308 51.0
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 3.4e-76 289.7 284 67.6
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 4.4e-76 289.3 358 62.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 5.8e-76 288.9 284 70.4
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 7.5e-76 288.5 358 63.7
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 9.8e-76 288.1 359 59.3
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.3e-75 287.7 358 60.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.3e-75 287.7 358 64.8
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 1.3e-75 287.7 283 61.5
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 1.7e-75 287.3 361 60.9
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 2.2e-75 287.0 287 68.6
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 4.9e-75 285.8 352 58.2
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 6.4e-75 285.4 283 70.0
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 1.1e-74 284.6 284 69.7
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 9.2e-74 281.6 293 67.2
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 4.6e-73 279.3 359 60.2
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.0e-72 278.1 239 60.3
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.3e-72 276.9 286 67.8
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 2.3e-72 276.9 349 59.9
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 3.0e-72 276.6 360 61.1
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 5.0e-72 275.8 361 57.9
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 1.9e-71 273.9 284 61.3
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 7.3e-71 271.9 355 58.6
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 2.8e-70 270.0 353 56.9
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.1e-69 266.5 241 57.7
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 3.1e-69 266.5 283 66.4
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.2e-69 265.8 167 74.3
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 6.8e-69 265.4 162 75.9
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.9e-67 260.0 240 58.8
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 4.1e-66 256.1 258 55.0
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 2.7e-65 253.4 313 63.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 3.5e-65 253.1 354 57.3
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 1.5e-63 247.7 282 64.2
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 1.5e-63 247.7 167 70.7
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 7.3e-63 245.4 283 58.7
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 7.3e-63 245.4 292 54.8
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 1.2e-62 244.6 355 55.5
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 1.6e-62 244.2 285 63.5
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 2.1e-62 243.8 354 55.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 3.1e-61 240.0 431 48.5
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 3.1e-61 240.0 279 66.3
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 1.2e-60 238.0 165 70.3
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 2.6e-60 236.9 356 53.1
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.4e-60 236.1 284 62.7
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.2e-59 233.8 381 38.3
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 8.4e-59 231.9 279 63.4
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 3.5e-57 226.5 244 70.5
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 6.0e-57 225.7 354 53.1
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 1.3e-56 224.6 316 42.1
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 3.1e-53 213.4 199 56.3
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.4e-52 209.5 355 51.5
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 7.3e-47 192.2 277 57.4
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 6.2e-46 189.1 262 59.5
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 9.3e-42 175.3 194 77.3
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 1.6e-41 174.5 123 66.7
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 4.6e-41 172.9 241 64.7
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.9e-40 169.9 141 58.2
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 6.6e-40 169.1 162 52.5
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.1e-39 168.3 194 75.3
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 1.4e-34 151.4 117 59.0
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 2.5e-31 140.6 286 49.7
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 7.4e-31 139.0 278 48.9
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.5e-28 129.8 174 43.1
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.2e-26 123.2 171 41.5
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.2e-25 121.7 177 40.7
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 3.9e-24 116.7 163 74.2
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 2.1e-22 110.9 86 58.1
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 1.3e-19 101.7 107 47.7
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.7e-19 101.3 155 73.5
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 4.2e-18 96.7 91 53.8
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 3.9e-16 90.1 111 48.6
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 2.2e-14 84.3 64 62.5
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 8.2e-14 82.4 126 77.8
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 5.9e-12 76.3 132 58.3
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.4e-08 65.1 124 75.0
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.1e-08 63.2 40 70.0
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 3.3e-07 60.5 44 59.1
FAN04G3213 Fragaria x ananassa HOM05D036052 ORTHO05D006215 5.7e-07 59.7 54 51.9
FAN09G1413 Fragaria x ananassa HOM05D036052 ORTHO05D006215 9.7e-07 58.9 51 52.9


User provided reference genes

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