Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 5.9e-197 690.6 345 100.0
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 1.6e-178 629.4 315 99.4
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 3.8e-143 511.9 327 78.3
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 4.2e-134 481.9 324 75.9
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 2.5e-123 446.0 310 66.8
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 3.1e-121 439.1 337 65.6
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 2.5e-118 429.5 307 66.1
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 8.8e-116 421.0 297 67.3
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.5e-115 420.2 319 63.6
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 3.3e-115 419.1 322 61.8
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 9.7e-115 417.5 336 61.0
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 2.0e-112 409.8 335 59.4
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 1.0e-111 407.5 310 62.9
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 8.5e-111 404.4 233 83.3
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 3.2e-110 402.5 342 58.5
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 5.5e-110 401.7 345 59.4
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 3.6e-109 399.1 328 59.1
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 3.6e-109 399.1 322 60.6
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 1.0e-108 397.5 306 61.1
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 1.4e-108 397.1 295 62.7
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 1.8e-108 396.7 345 57.1
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 1.8e-108 396.7 319 60.2
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 6.7e-108 394.8 320 59.7
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 6.7e-108 394.8 336 58.6
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 2.0e-107 393.3 316 58.9
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 3.7e-106 389.0 311 59.5
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 1.1e-105 387.5 324 58.0
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 1.1e-105 387.5 314 58.9
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 3.1e-105 386.0 210 90.0
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 5.3e-105 385.2 304 58.6
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 9.1e-105 384.4 327 57.2
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 1.2e-104 384.0 309 61.8
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 1.6e-104 383.6 321 58.9
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 3.5e-104 382.5 311 58.2
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 3.5e-104 382.5 311 58.5
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 4.5e-104 382.1 313 57.5
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 1.0e-103 380.9 337 55.5
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.3e-103 380.6 284 62.3
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 1.7e-103 380.2 329 56.5
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 3.8e-103 379.0 337 55.2
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 3.8e-103 379.0 327 54.1
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 3.8e-103 379.0 325 56.9
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.5e-102 377.1 323 55.7
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 3.2e-102 375.9 318 55.0
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 7.2e-102 374.8 311 57.2
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 4.7e-101 372.1 311 55.9
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 6.1e-101 371.7 306 59.8
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 8.0e-101 371.3 295 57.3
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.0e-100 369.4 315 55.2
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 5.2e-100 368.6 305 58.4
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 5.2e-100 368.6 305 58.0
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 5.2e-100 368.6 311 55.9
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 6.7e-100 368.2 318 56.6
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 8.8e-100 367.9 311 58.8
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.0e-99 366.7 322 56.5
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 5.7e-99 365.2 283 60.8
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 7.5e-99 364.8 297 58.9
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 9.7e-99 364.4 315 56.2
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.1e-97 360.9 304 56.2
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 1.8e-97 360.1 284 59.2
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 2.4e-97 359.8 460 43.9
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 3.1e-97 359.4 282 60.6
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.3e-97 358.6 330 53.0
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 1.6e-96 357.1 326 55.5
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 2.0e-96 356.7 279 60.2
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 7.7e-96 354.8 305 54.8
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.8e-95 352.4 304 55.3
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 1.1e-94 350.9 298 55.0
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 4.2e-94 349.0 321 55.8
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 1.6e-93 347.1 305 55.1
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 3.0e-92 342.8 280 57.9
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 3.0e-92 342.8 291 58.8
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 2.8e-90 336.3 321 51.7
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 3.1e-89 332.8 295 54.9
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 4.1e-89 332.4 322 53.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 7.0e-89 331.6 284 58.5
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 1.3e-87 327.4 299 51.5
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 2.1e-85 320.1 396 42.9
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 2.8e-85 319.7 236 64.0
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 8.8e-84 314.7 261 54.8
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 2.6e-83 313.2 349 49.3
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 3.7e-82 309.3 339 51.9
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.4e-81 307.4 234 60.7
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 1.7e-79 300.4 151 97.4
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.9e-78 297.0 263 54.4
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.2e-77 294.3 235 57.0
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 6.1e-77 292.0 334 44.3
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 2.9e-74 283.1 202 69.8
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 4.9e-74 282.3 250 53.2
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 3.5e-72 276.2 231 60.6
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 4.6e-72 275.8 283 47.7
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 8.6e-71 271.6 349 45.6
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.7e-66 257.3 311 42.1
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 9.2e-65 251.5 207 59.4
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 5.8e-59 232.3 311 39.2
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 2.3e-55 220.3 172 60.5
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 1.1e-54 218.0 303 41.3
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 4.0e-52 209.5 201 53.2
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 5.8e-51 205.7 201 52.2
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 7.6e-51 205.3 446 35.0
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.2e-48 198.0 142 65.5
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 4.6e-48 196.1 326 36.5
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 6.6e-47 192.2 161 55.9
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 1.8e-44 184.1 308 36.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 4.8e-37 159.5 121 58.7
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 6.9e-36 155.6 160 50.6
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.8e-34 149.8 101 59.4
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 3.5e-32 143.3 94 68.1
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 4.3e-30 136.3 236 42.4
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 6.4e-26 122.5 95 55.8
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 7.1e-25 119.0 82 57.3
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 4.6e-24 116.3 234 32.1
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 8.7e-23 112.1 76 60.5
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 1.1e-22 111.7 73 65.8
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 7.4e-22 109.0 333 28.2
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 2.6e-19 100.5 314 27.1
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 3.7e-13 80.1 65 55.4
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 4.2e-09 66.6 66 51.5
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 8.8e-07 58.9 44 56.8


User provided reference genes

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