Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 3.2e-72 275.0 140 100.0
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 6.6e-70 267.3 138 98.6
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 1.8e-67 259.2 138 96.4
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 1.3e-57 226.5 139 82.7
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 2.1e-36 156.0 133 57.1
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 6.2e-36 154.5 96 81.2
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.4e-35 152.5 133 57.9
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.9e-33 145.6 133 60.2
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 2.9e-33 145.6 126 57.9
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.4e-32 143.3 121 59.5
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 4.2e-32 141.7 139 51.1
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 1.2e-31 140.2 139 54.7
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 7.9e-31 137.5 142 52.1
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 3.3e-29 132.1 132 49.2
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 7.4e-29 131.0 123 56.1
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.6e-28 129.8 122 55.7
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 8.1e-28 127.5 151 47.7
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 8.1e-28 127.5 132 51.5
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.1e-27 127.1 122 54.1
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 1.4e-27 126.7 123 55.3
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 9.0e-27 124.0 136 47.8
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.2e-26 123.6 91 63.7
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 2.6e-26 122.5 120 55.0
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 9.9e-26 120.6 134 50.7
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 9.9e-26 120.6 121 52.9
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.3e-25 120.2 123 52.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 2.2e-25 119.4 129 52.7
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 8.4e-25 117.5 115 53.9
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 1.1e-24 117.1 122 50.0
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.9e-24 116.3 117 48.7
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 2.4e-24 115.9 122 49.2
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 5.5e-24 114.8 116 51.7
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 5.5e-24 114.8 116 52.6
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 7.1e-24 114.4 122 49.2
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 9.3e-24 114.0 119 52.1
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 9.3e-24 114.0 137 47.4
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 1.2e-23 113.6 120 55.0
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 1.6e-23 113.2 117 47.9
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.6e-23 113.2 120 53.3
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 1.6e-23 113.2 134 44.0
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 2.7e-23 112.5 121 52.1
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 3.5e-23 112.1 127 48.0
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.5e-23 112.1 120 53.3
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 6.0e-23 111.3 138 44.9
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 7.9e-23 110.9 120 53.3
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.3e-22 110.2 138 44.2
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 1.3e-22 110.2 127 48.8
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 1.3e-22 110.2 133 45.9
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 1.8e-22 109.8 91 59.3
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 3.9e-22 108.6 124 49.2
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 5.1e-22 108.2 144 46.5
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 5.1e-22 108.2 127 48.0
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 5.1e-22 108.2 112 47.3
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 6.7e-22 107.8 126 46.0
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 1.5e-21 106.7 106 51.9
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 1.9e-21 106.3 129 47.3
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 5.6e-21 104.8 84 61.9
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 7.4e-21 104.4 132 45.5
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 9.6e-21 104.0 84 60.7
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 9.6e-21 104.0 138 44.2
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 1.3e-20 103.6 84 60.7
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 1.3e-20 103.6 83 61.4
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 1.3e-20 103.6 111 49.5
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 4.8e-20 101.7 125 48.8
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 4.8e-20 101.7 111 47.7
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 6.2e-20 101.3 123 47.2
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 6.2e-20 101.3 123 47.2
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 8.1e-20 100.9 115 49.6
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.4e-19 100.1 115 47.8
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.8e-19 99.8 107 48.6
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.8e-19 99.8 122 45.9
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.8e-19 99.8 131 44.3
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 1.8e-19 99.8 138 42.0
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 2.4e-19 99.4 93 55.9
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 6.9e-19 97.8 122 47.5
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 6.9e-19 97.8 119 48.7
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 9.0e-19 97.4 121 47.9
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 1.5e-18 96.7 120 47.5
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 1.5e-18 96.7 112 44.6
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 2.0e-18 96.3 119 47.9
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 3.4e-18 95.5 122 46.7
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 4.5e-18 95.1 119 47.9
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 4.5e-18 95.1 123 46.3
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 5.8e-18 94.7 123 46.3
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 5.8e-18 94.7 122 44.3
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 7.6e-18 94.4 124 46.8
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.7e-17 93.2 114 46.5
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.7e-17 93.2 84 58.3
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 2.2e-17 92.8 121 46.3
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 2.9e-17 92.4 131 42.7
Nitab4.5_0000978g0250 Nicotiana tabacum HOM05D007217 ORTHO05D009092 6.5e-17 91.3 116 46.6
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-16 90.5 106 48.1
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 2.5e-16 89.4 127 44.9
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 4.2e-16 88.6 82 53.7
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 7.1e-16 87.8 127 44.1
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 6.0e-15 84.7 103 48.5
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 7.9e-15 84.3 103 41.7
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 3.9e-14 82.0 112 38.4
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.9e-13 79.7 113 41.6
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 7.4e-13 77.8 87 47.1
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 7.4e-13 77.8 87 47.1
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 4.8e-12 75.1 150 36.7
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 1.4e-11 73.6 53 69.8
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 9.0e-11 70.9 58 56.9
Zm00001eb228930 Zea mays HOM05D007217 ORTHO05D009092 1.2e-07 60.5 77 44.2
C02p14430 Brassica napus HOM05D007217 ORTHO05D009092 1.6e-07 60.1 61 50.8
BolC2t07567H Brassica oleracea HOM05D007217 ORTHO05D009092 1.6e-07 60.1 61 50.8
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 2.1e-07 59.7 66 48.5
Peaxi162Scf00378g00634 Petunia axillaris HOM05D007217 ORTHO05D009092 2.1e-07 59.7 85 43.5
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 2.7e-07 59.3 66 48.5
ATR0763G267 Amborella trichopoda HOM05D007217 ORTHO05D009092 1.0e-06 57.4 71 45.1


User provided reference genes

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