Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 9.9e-195 683.3 360 100.0
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 3.8e-194 681.4 360 99.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 4.6e-192 674.5 360 98.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 1.2e-179 633.3 361 93.9
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.9e-177 625.9 377 89.4
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-176 623.2 377 89.1
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 3.0e-175 618.6 359 90.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 1.5e-166 589.7 346 88.7
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.3e-165 586.6 384 81.8
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 1.6e-165 586.3 377 81.7
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 1.6e-165 586.3 348 87.9
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.1e-164 583.6 369 82.9
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.4e-164 583.2 368 82.9
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.8e-164 582.8 341 89.1
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 2.4e-164 582.4 346 87.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.1e-164 582.0 346 87.3
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 6.9e-164 580.9 346 87.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.6e-163 578.9 368 82.3
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 3.4e-163 578.6 365 82.7
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 3.4e-163 578.6 367 83.7
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 5.8e-163 577.8 336 88.4
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.8e-163 577.8 371 83.0
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.2e-162 575.9 368 83.7
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 8.4e-162 573.9 369 83.7
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 8.4e-162 573.9 368 83.4
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 1.9e-161 572.8 377 80.6
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 1.9e-161 572.8 346 85.8
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 3.2e-161 572.0 350 86.0
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.2e-160 570.1 366 82.8
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 1.6e-160 569.7 367 81.2
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 2.1e-160 569.3 368 82.9
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 6.1e-160 567.8 364 81.6
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.3e-159 566.6 367 81.7
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 1.8e-159 566.2 378 81.0
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 1.8e-159 566.2 367 80.9
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.3e-159 565.8 351 84.9
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.3e-159 565.8 376 81.1
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.3e-159 565.8 362 82.9
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 3.9e-159 565.1 352 84.4
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 6.7e-159 564.3 346 85.3
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 1.1e-158 563.5 361 81.7
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.5e-158 563.1 366 80.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.5e-158 563.1 361 82.8
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.5e-158 563.1 361 82.8
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.9e-158 562.8 366 80.6
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.9e-158 562.8 366 81.4
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 3.3e-158 562.0 336 87.2
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 4.3e-158 561.6 327 89.0
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 5.7e-158 561.2 365 81.1
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 5.7e-158 561.2 371 80.6
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 7.4e-158 560.8 385 78.7
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 7.4e-158 560.8 366 81.1
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.3e-157 560.1 360 82.8
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 1.3e-157 560.1 366 80.3
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.6e-157 559.7 334 86.8
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.6e-157 559.7 367 80.4
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 4.8e-157 558.1 365 81.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 6.3e-157 557.8 379 78.9
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 8.2e-157 557.4 359 80.8
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 8.2e-157 557.4 379 78.6
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 3.1e-156 555.4 359 82.2
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 3.1e-156 555.4 367 81.7
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 4.1e-156 555.1 364 81.0
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 6.9e-156 554.3 390 76.4
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 6.9e-156 554.3 380 79.7
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 9.0e-156 553.9 361 81.7
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.2e-155 553.5 364 80.5
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.2e-155 553.5 362 80.7
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.2e-155 553.5 361 82.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-155 553.1 390 76.2
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.5e-155 553.1 390 76.2
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 2.0e-155 552.7 371 79.5
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 2.0e-155 552.7 366 80.1
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.6e-155 552.4 362 80.1
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 4.5e-155 551.6 367 79.6
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 4.5e-155 551.6 362 81.2
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 5.9e-155 551.2 375 78.9
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.9e-155 551.2 390 75.9
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 5.9e-155 551.2 390 75.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 5.9e-155 551.2 359 80.8
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 7.7e-155 550.8 363 81.5
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 1.0e-154 550.4 363 81.3
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 1.0e-154 550.4 362 81.5
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.3e-154 550.1 362 80.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 1.7e-154 549.7 364 80.5
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.7e-154 549.7 354 79.7
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.2e-154 549.3 368 80.4
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 2.9e-154 548.9 363 81.0
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 2.9e-154 548.9 365 80.0
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 2.9e-154 548.9 365 80.0
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 2.9e-154 548.9 387 77.5
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 3.8e-154 548.5 346 82.7
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 8.5e-154 547.4 390 75.9
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.2e-153 545.4 340 84.7
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 4.2e-153 545.0 366 79.2
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 5.5e-153 544.7 365 79.2
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 7.2e-153 544.3 327 84.1
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-152 543.1 378 77.0
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 7.9e-152 540.8 362 80.7
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.8e-151 539.7 378 76.5
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 2.3e-151 539.3 365 78.4
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 3.9e-151 538.5 334 81.4
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.5e-150 535.8 378 75.7
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 3.3e-150 535.4 297 92.3
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.8e-149 532.3 377 77.7
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 4.8e-149 531.6 356 78.4
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 1.1e-148 530.4 348 81.6
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.7e-146 523.1 384 75.0
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 1.4e-143 513.5 307 85.0
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.4e-142 508.4 297 86.2
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 5.7e-142 508.1 378 74.6
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 9.7e-142 507.3 361 76.5
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 8.2e-141 504.2 297 86.5
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 2.4e-140 502.7 364 73.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 3.5e-139 498.8 367 74.4
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 5.0e-138 495.0 334 76.3
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 8.5e-138 494.2 336 77.4
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 3.6e-136 488.8 362 71.8
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 2.2e-133 479.6 324 77.5
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 4.5e-131 471.9 318 79.2
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 1.7e-130 469.9 314 80.6
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.6e-128 462.2 354 72.0
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 5.7e-126 454.9 364 67.3
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 6.3e-125 451.4 353 67.4
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 8.0e-120 434.5 246 92.3
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-117 427.2 272 82.7
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 3.1e-116 422.5 367 68.1
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.0e-114 417.5 321 69.2
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.5e-107 392.5 316 69.0
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 1.0e-106 391.0 366 57.7
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.9e-106 389.0 279 68.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 5.6e-97 358.6 326 58.9
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 6.4e-93 345.1 198 90.4
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 1.4e-79 300.8 198 80.3
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 1.4e-79 300.8 198 80.3
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 3.2e-76 289.7 166 88.0
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 3.8e-69 266.2 357 50.1
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.4e-63 246.9 294 44.9
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 1.8e-58 230.7 293 44.0
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 4.3e-57 226.1 129 87.6
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.0e-55 219.5 154 77.3
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 2.2e-53 213.8 324 41.0
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.3e-50 204.5 178 65.2
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 1.6e-48 197.6 216 59.3
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.6e-40 171.0 149 65.1
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.8e-39 167.5 213 50.7
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 5.5e-36 156.0 125 71.2
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.2e-30 138.3 80 88.8
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 1.4e-26 124.8 93 65.6
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.8e-18 97.8 75 70.7
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 1.4e-15 88.2 48 93.8
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 2.7e-14 84.0 90 53.3
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.5e-12 78.2 64 65.6
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 7.2e-12 75.9 52 78.8
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.2e-09 68.6 42 69.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 1.2e-09 68.6 43 79.1


User provided reference genes

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