Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006860.3 Solanum lycopersicum HOM05D001890 ORTHO05D008163 4.1e-145 518.1 268 100.0
Sopen01g002850 Solanum pennellii HOM05D001890 ORTHO05D008163 4.2e-142 508.1 268 97.8
PGSC0003DMG400021337 Solanum tuberosum HOM05D001890 ORTHO05D008163 8.3e-138 493.8 269 96.3
CAN.G911.27 Capsicum annuum HOM05D001890 ORTHO05D008163 1.6e-101 373.2 282 75.5
Nitab4.5_0009788g0030 Nicotiana tabacum HOM05D001890 ORTHO05D008163 5.8e-99 364.8 270 74.4
Nitab4.5_0005218g0010 Nicotiana tabacum HOM05D001890 ORTHO05D008163 3.0e-95 352.4 272 73.9
Dinv11885 Davidia involucrata HOM05D001890 ORTHO05D008163 3.5e-72 275.8 273 59.7
Manes.08G036100 Manihot esculenta HOM05D001890 ORTHO05D008163 1.1e-70 270.8 240 60.4
Rhsim03G0062200 Rhododendron simsii HOM05D001890 ORTHO05D008163 1.1e-70 270.8 218 67.9
TAR369G0922 Trochodendron aralioides HOM05D001890 ORTHO05D008163 5.6e-70 268.5 212 65.1
Migut.J00743 Erythranthe guttata HOM05D001890 ORTHO05D008163 7.4e-70 268.1 200 69.5
Gorai.002G233900 Gossypium raimondii HOM05D001890 ORTHO05D008163 9.6e-70 267.7 239 61.1
MSTRG.19331 Avicennia marina HOM05D001890 ORTHO05D008163 2.8e-69 266.2 243 60.9
Gohir.A01G200100 Gossypium hirsutum HOM05D001890 ORTHO05D008163 2.8e-69 266.2 239 61.5
Oeu045017.1 Olea europaea HOM05D001890 ORTHO05D008163 2.8e-69 266.2 200 67.5
SGA_v2.0_scaffold18G08441 Striga asiatica HOM05D001890 ORTHO05D008163 2.8e-69 266.2 200 67.0
FvH4_6g20780 Fragaria vesca HOM05D001890 ORTHO05D008163 1.4e-68 263.8 223 61.4
Prupe.7G091100 Prunus persica HOM05D001890 ORTHO05D008163 1.4e-68 263.8 234 62.0
FAN05G2088 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.8e-68 263.5 223 61.0
FAN14G3769 Fragaria x ananassa HOM05D001890 ORTHO05D008163 1.8e-68 263.5 223 61.4
Gohir.D01G190200 Gossypium hirsutum HOM05D001890 ORTHO05D008163 1.8e-68 263.5 239 60.7
FAN09G2968 Fragaria x ananassa HOM05D001890 ORTHO05D008163 2.4e-68 263.1 223 61.0
QL07p026864 Quercus lobata HOM05D001890 ORTHO05D008163 2.4e-68 263.1 228 63.6
RcHm_v2.0_Chr3g0476781 Rosa chinensis HOM05D001890 ORTHO05D008163 2.4e-68 263.1 267 54.3
Cc06_g06850 Coffea canephora HOM05D001890 ORTHO05D008163 6.9e-68 261.5 201 66.7
Haze_20108 Corylus avellana HOM05D001890 ORTHO05D008163 6.9e-68 261.5 276 54.0
Thecc.05G108500 Theobroma cacao HOM05D001890 ORTHO05D008163 6.9e-68 261.5 220 64.1
Actinidia03864 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.2e-67 260.8 263 57.8
Actinidia03972 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.2e-67 260.8 263 57.8
MD14G1043000 Malus domestica HOM05D001890 ORTHO05D008163 3.4e-67 259.2 244 57.0
Eucgr.A02558 Eucalyptus grandis HOM05D001890 ORTHO05D008163 4.5e-67 258.8 218 63.3
Ciclev10012448m.g Citrus clementina HOM05D001890 ORTHO05D008163 1.9e-65 253.4 222 62.2
MELO3C009561.2 Cucumis melo HOM05D001890 ORTHO05D008163 1.9e-65 253.4 284 54.2
GSVIVG01022555001 Vitis vinifera HOM05D001890 ORTHO05D008163 1.9e-65 253.4 246 57.3
TPR.G21244 Trifolium pratense HOM05D001890 ORTHO05D003442 2.5e-65 253.1 278 53.6
DCAR_013451 Daucus carota HOM05D001890 ORTHO05D008163 3.2e-65 252.7 208 62.5
MBI05_g37895_MAGBIO Magnolia biondii HOM05D001890 ORTHO05D008163 4.2e-65 252.3 217 59.9
CANSAT64G1416 Cannabis sativa HOM05D001890 ORTHO05D008163 5.5e-65 251.9 277 52.3
CsaV3_3G038180 Cucumis sativus L. HOM05D001890 ORTHO05D008163 7.1e-65 251.5 244 57.8
MD12G1044000 Malus domestica HOM05D001890 ORTHO05D008163 7.1e-65 251.5 207 62.8
Atru.chr8.1300 Acer truncatum HOM05D001890 ORTHO05D008163 9.3e-65 251.1 214 62.1
Potri.006G200900 Populus trichocarpa HOM05D001890 ORTHO05D008163 9.3e-65 251.1 286 54.5
TWI74G0853 Tripterygium wilfordii HOM05D001890 ORTHO05D008163 9.3e-65 251.1 259 54.8
arahy.Tifrunner.gnm1.ann1.59XBIZ Arachis hypogaea HOM05D001890 ORTHO05D008163 1.2e-64 250.8 239 56.5
Hma1.2p1_2851F.1_g329460 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.7e-64 249.6 178 70.2
Lj5g0002159 Lotus japonicus HOM05D001890 ORTHO05D008163 4.6e-64 248.8 275 53.5
COL.COLO4_29517 Corchorus olitorius HOM05D001890 ORTHO05D008163 7.9e-64 248.1 218 61.9
HanXRQChr02g0053101 Helianthus annuus HOM05D001890 ORTHO05D008163 1.0e-63 247.7 248 53.6
arahy.Tifrunner.gnm1.ann1.XW59SW Arachis hypogaea HOM05D001890 ORTHO05D008163 1.8e-63 246.9 240 56.7
Glyma.10G083800 Glycine max HOM05D001890 ORTHO05D008163 2.3e-63 246.5 211 61.6
VMungo0251G0199 Vigna mungo HOM05D001890 ORTHO05D008163 2.3e-63 246.5 210 59.5
Sabra06G0154600 Salix brachista HOM05D001890 ORTHO05D008163 3.0e-63 246.1 282 52.1
Lalb_Chr06g0173221 Lupinus albus HOM05D001890 ORTHO05D008163 8.7e-63 244.6 281 53.0
Nn2g14391 Nelumbo nucifera HOM05D001890 ORTHO05D008163 1.1e-62 244.2 192 63.5
PSO170G4460 Papaver somniferum HOM05D001890 ORTHO05D008163 1.1e-62 244.2 192 65.1
Sed0014416 Sechium edule HOM05D001890 ORTHO05D008163 2.5e-62 243.0 203 62.1
BcaB01g05992 Brassica carinata HOM05D001890 ORTHO05D008163 3.3e-62 242.7 213 61.5
C03p03150 Brassica napus HOM05D001890 ORTHO05D003442 4.3e-62 242.3 212 60.4
Glyma.02G193000 Glycine max HOM05D001890 ORTHO05D008163 4.3e-62 242.3 211 60.7
Oeu020166.1 Olea europaea HOM05D001890 ORTHO05D008163 4.3e-62 242.3 200 63.5
A03p02720 Brassica napus HOM05D001890 ORTHO05D008163 5.7e-62 241.9 271 52.8
SGA_v2.0_scaffold116G32259 Striga asiatica HOM05D001890 ORTHO05D008163 5.7e-62 241.9 253 53.4
EL10Ac5g11823 Beta vulgaris HOM05D001890 ORTHO05D008163 7.4e-62 241.5 192 64.1
BolC3t12860H Brassica oleracea HOM05D001890 ORTHO05D003442 9.7e-62 241.1 214 61.2
BraA03t09635Z Brassica rapa HOM05D001890 ORTHO05D008163 9.7e-62 241.1 213 60.6
Phvul.007G266300 Phaseolus vulgaris HOM05D001890 ORTHO05D008163 1.6e-61 240.4 212 59.0
CiPaw.09G022900 Carya illinoinensis HOM05D001890 ORTHO05D008163 2.2e-61 240.0 200 64.0
PSO407G0155 Papaver somniferum HOM05D001890 ORTHO05D008163 2.2e-61 240.0 192 65.6
Lsat_1_v5_gn_6_34681 Lactuca sativa HOM05D001890 ORTHO05D008163 2.8e-61 239.6 202 60.4
vmacro07500 Vaccinium macrocarpon HOM05D001890 ORTHO05D008163 1.8e-60 236.9 254 56.7
BolC9t59784H Brassica oleracea HOM05D001890 ORTHO05D008163 2.4e-60 236.5 212 59.0
Ah.12g054380 Amaranthus hybridus HOM05D001890 ORTHO05D008163 4.1e-60 235.7 199 63.3
CARHR207150 Cardamine hirsuta HOM05D001890 ORTHO05D008163 4.1e-60 235.7 211 58.8
THA.LOC104816627 Tarenaya hassleriana HOM05D001890 ORTHO05D008163 9.0e-60 234.6 215 58.6
Aa31LG5G17190 Aethionema arabicum HOM05D001890 ORTHO05D008163 2.0e-59 233.4 207 57.5
BraA10t45037Z Brassica rapa HOM05D001890 ORTHO05D008163 2.0e-59 233.4 212 58.5
AT5G06410 Arabidopsis thaliana HOM05D001890 ORTHO05D008163 4.5e-59 232.3 210 59.0
ECA233G0010 Erigeron canadensis HOM05D001890 ORTHO05D008163 4.5e-59 232.3 276 51.1
unitig_578.g15805 Utricularia gibba HOM05D001890 ORTHO05D008163 4.5e-59 232.3 197 61.4
SHI39226 Sapria himalayana HOM05D001890 ORTHO05D008163 5.9e-59 231.9 207 58.0
AL6G16500 Arabidopsis lyrata HOM05D001890 ORTHO05D008163 7.7e-59 231.5 213 58.2
Thhalv10014422m.g Eutrema salsugineum HOM05D001890 ORTHO05D008163 2.2e-58 229.9 210 57.1
Medtr1g055300 Medicago truncatula HOM05D001890 ORTHO05D008163 2.2e-58 229.9 197 60.9
Aqoxy1G01947 Aquilegia oxysepala HOM05D001890 ORTHO05D008163 3.8e-58 229.2 256 50.4
HPP92_018252 Vanilla planifolia HOM05D001890 ORTHO05D008163 9.4e-57 224.6 194 60.8
ATR0697G265 Amborella trichopoda HOM05D001890 ORTHO05D008163 1.4e-55 220.7 205 56.1
Zm00001eb161520 Zea mays HOM05D001890 ORTHO05D008163 2.3e-55 219.9 231 53.2
ClCG10G018120 Citrullus lanatus HOM05D001890 ORTHO05D008163 1.5e-54 217.2 244 53.3
FAN02G4586 Fragaria x ananassa HOM05D001890 ORTHO05D003442 1.7e-53 213.8 205 56.1
RcHm_v2.0_Chr3g0476751 Rosa chinensis HOM05D001890 ORTHO05D008163 3.7e-53 212.6 272 48.5
CSS0004156 Camellia sinensis var. sinensis HOM05D001890 ORTHO05D008163 4.8e-53 212.2 154 75.3
Os12g0456200 Oryza sativa ssp. japonica HOM05D001890 ORTHO05D008163 1.0e-50 204.5 167 62.9
Psat6g128200 Pisum sativum HOM05D001890 ORTHO05D008163 8.5e-50 201.4 277 46.6
SEGI_25149 Sequoiadendron giganteum HOM05D001890 ORTHO05D008163 9.4e-49 198.0 192 50.0
Sc22g0003100 Simmondsia chinensis HOM05D001890 ORTHO05D008163 1.2e-48 197.6 153 69.3
PGR004G2365 Punica granatum HOM05D001890 ORTHO05D008163 1.4e-47 194.1 216 51.4
Dinv25069 Davidia involucrata HOM05D001890 ORTHO05D003442 5.1e-47 192.2 222 51.8
AUR62036336 Chenopodium quinoa HOM05D001890 ORTHO05D008163 1.1e-46 191.0 154 64.3
FAN05G2830 Fragaria x ananassa HOM05D001890 ORTHO05D008163 3.3e-46 189.5 143 68.5
Lj3C241T9 Lonicera japonica HOM05D001890 ORTHO05D008163 2.2e-45 186.8 143 66.4
Hund10835 Selenicereus undatus HOM05D001890 ORTHO05D008163 1.4e-44 184.1 177 57.6
CDE06G1636 Ceratophyllum demersum HOM05D001890 ORTHO05D000511 3.1e-44 183.0 167 56.9
Psat2g142840 Pisum sativum HOM05D001890 ORTHO05D008163 1.0e-42 177.9 136 64.0
Actinidia37766 Actinidia chinensis HOM05D001890 ORTHO05D008163 1.9e-41 173.7 150 64.0
Sp6g36440 Schrenkiella parvula HOM05D001890 ORTHO05D008163 1.9e-41 173.7 179 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1093 Anthoceros agrestis HOM05D001890 ORTHO05D008163 8.0e-40 168.3 208 42.8
Cpa.g.sc104.2 Carica papaya HOM05D001890 ORTHO05D008163 2.0e-38 163.7 149 61.1
Pp3c16_9340 Physcomitrium patens HOM05D001890 ORTHO05D008163 4.4e-38 162.5 207 44.4
Peaxi162Scf00675g00610 Petunia axillaris HOM05D001890 ORTHO05D008163 5.3e-36 155.6 180 56.7
AUR62030695 Chenopodium quinoa HOM05D001890 ORTHO05D008163 8.5e-34 148.3 122 59.8
Hma1.2p1_2851F.1_g329450 Hydrangea macrophylla HOM05D001890 ORTHO05D008163 2.7e-32 143.3 154 53.2
CBR_g70174 Chara braunii HOM05D001890 ORTHO05D008163 2.0e-30 137.1 197 42.1
Mapoly0055s0040 Marchantia polymorpha HOM05D001890 ORTHO05D008163 8.3e-29 131.7 200 38.0
Peaxi162Scf00767g00522 Petunia axillaris HOM05D001890 ORTHO05D008163 5.0e-26 122.5 255 36.1
Peaxi162Scf00675g00611 Petunia axillaris HOM05D001890 ORTHO05D008163 1.1e-25 121.3 100 69.0
Psat1g223560 Pisum sativum HOM05D001890 ORTHO05D008163 1.3e-21 107.8 91 56.0
Cre11.g467718 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 6.3e-21 105.5 179 37.4
Cre12.g507559 Chlamydomonas reinhardtii HOM05D001890 ORTHO05D008163 6.3e-21 105.5 179 37.4
Lj1g0015991 Lotus japonicus HOM05D001890 ORTHO05D008163 1.6e-16 90.9 86 55.8
SMO353G0218 Selaginella moellendorffii HOM05D001890 ORTHO05D008163 2.8e-16 90.1 123 39.0
MCO10G285 Micromonas commoda HOM05D001890 ORTHO05D008163 5.7e-14 82.4 237 30.8
CBR_g31284 Chara braunii HOM05D001890 ORTHO05D008163 2.2e-13 80.5 185 31.9
Lalb_Chr25g0282121 Lupinus albus HOM05D001890 ORTHO05D008163 5.4e-12 75.9 103 46.6
Lj3C241T8 Lonicera japonica HOM05D001890 ORTHO05D008163 8.9e-07 58.5 54 53.7


User provided reference genes

Program Settings