Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 0.0e+00 1258.4 636 100.0
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 0.0e+00 1201.4 639 96.1
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 0.0e+00 1184.9 637 94.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 3.2e-305 1051.2 640 84.7
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 2.7e-256 888.6 639 73.2
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 5.2e-255 884.4 639 72.9
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 8.8e-239 830.5 637 71.3
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 5.4e-196 688.3 637 57.3
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.0e-194 684.1 643 56.9
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 1.5e-185 653.7 661 54.5
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.2e-182 644.0 643 56.0
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.9e-178 629.0 640 54.1
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 1.4e-172 610.5 643 53.0
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 5.5e-172 608.6 690 51.4
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.0e-170 602.8 643 52.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.3e-165 587.4 639 51.6
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 3.8e-165 585.9 646 50.9
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.0e-162 577.8 640 50.6
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.9e-162 575.9 499 65.9
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 6.7e-162 575.1 641 51.0
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 1.1e-161 574.3 644 51.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 1.9e-161 573.5 639 51.2
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 3.3e-161 572.8 642 50.3
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 3.3e-161 572.8 647 49.8
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.1e-159 565.8 628 51.6
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 5.3e-159 565.5 642 50.9
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 7.7e-158 561.6 638 50.5
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 6.5e-157 558.5 648 49.8
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 1.4e-156 557.4 645 49.8
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 4.2e-156 555.8 637 49.8
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 5.5e-156 555.4 643 49.9
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 9.4e-156 554.7 638 50.2
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 1.4e-154 550.8 641 49.8
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 3.3e-153 546.2 505 58.4
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 3.3e-153 546.2 649 47.8
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 5.7e-153 545.4 642 50.8
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 2.8e-152 543.1 637 49.1
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 3.7e-152 542.7 640 49.2
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 8.2e-152 541.6 637 49.0
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 1.8e-151 540.4 640 49.4
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 2.4e-151 540.0 636 50.0
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 9.1e-151 538.1 638 49.1
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 3.4e-150 536.2 641 50.4
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 4.5e-150 535.8 623 49.1
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 2.3e-146 523.5 673 47.3
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.0e-146 523.1 639 48.0
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 3.0e-146 523.1 647 48.8
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.3e-145 519.6 639 47.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 9.7e-145 518.1 617 48.0
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.7e-144 517.3 639 47.9
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 4.1e-143 512.7 658 47.4
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 2.6e-142 510.0 633 48.5
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 1.3e-141 507.7 644 47.5
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 1.7e-141 507.3 638 45.6
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.8e-141 506.1 639 47.1
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 1.9e-140 503.8 706 44.1
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 1.9e-140 503.8 642 46.0
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 4.2e-140 502.7 641 46.8
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 1.2e-139 501.1 673 46.4
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 1.6e-139 500.7 639 47.4
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 2.1e-139 500.4 639 46.6
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 2.7e-139 500.0 640 46.9
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.4e-138 497.7 623 45.4
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 4.4e-137 492.7 618 47.6
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 7.5e-137 491.9 654 46.0
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 6.3e-136 488.8 614 47.4
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 2.4e-135 486.9 643 45.7
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 5.3e-135 485.7 612 47.5
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 7.0e-135 485.3 629 46.4
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 7.0e-135 485.3 640 45.2
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 2.7e-134 483.4 618 45.8
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 4.5e-134 482.6 639 45.5
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.3e-133 481.1 639 45.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.7e-133 480.7 643 45.4
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 8.5e-133 478.4 641 45.6
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.1e-132 478.0 649 45.0
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 1.5e-132 477.6 638 46.2
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 9.4e-132 474.9 610 45.9
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 9.4e-132 474.9 613 45.5
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 2.7e-131 473.4 639 45.7
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 4.7e-131 472.6 615 47.0
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 4.7e-131 472.6 650 43.5
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 3.0e-130 469.9 646 44.7
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 8.8e-130 468.4 616 45.1
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 1.2e-129 468.0 610 46.1
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 1.5e-129 467.6 638 45.9
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 1.5e-129 467.6 646 45.0
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 4.4e-129 466.1 647 45.0
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 5.7e-129 465.7 649 43.1
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 2.2e-128 463.8 646 44.4
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 2.8e-128 463.4 647 44.2
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.7e-128 463.0 636 43.9
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 4.8e-128 462.6 639 44.6
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 4.8e-128 462.6 665 44.2
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 8.3e-128 461.8 640 44.5
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 4.1e-127 459.5 645 44.7
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 9.1e-127 458.4 622 44.2
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.0e-126 457.2 644 44.7
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 3.5e-126 456.4 636 43.6
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 5.9e-126 455.7 617 45.4
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 7.7e-126 455.3 669 43.3
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 2.2e-125 453.8 611 44.5
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.5e-124 450.3 613 46.0
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.2e-124 449.9 645 44.5
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 3.2e-124 449.9 634 43.2
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 5.5e-124 449.1 611 46.3
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 5.5e-124 449.1 615 46.0
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 1.2e-123 448.0 639 43.0
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.6e-123 447.6 508 50.6
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 3.0e-122 443.4 646 43.3
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.0e-122 443.0 667 41.7
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 8.8e-122 441.8 646 43.5
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 8.8e-122 441.8 628 41.2
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 4.4e-121 439.5 410 56.6
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 2.2e-120 437.2 667 41.4
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.2e-118 431.4 454 57.5
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 2.7e-118 430.3 643 42.9
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 3.8e-117 426.4 611 44.7
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 5.0e-117 426.0 611 44.7
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 1.6e-115 421.0 395 56.5
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 3.6e-115 419.9 618 41.9
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 3.4e-113 413.3 645 40.6
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 8.6e-109 398.7 568 43.8
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 1.1e-108 398.3 611 39.9
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 2.8e-107 393.7 625 41.9
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 2.3e-106 390.6 385 55.8
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 3.7e-104 383.3 614 38.9
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 5.4e-103 379.4 489 47.0
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 1.2e-91 341.7 354 53.7
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 5.2e-90 336.3 376 49.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 8.9e-90 335.5 324 54.3
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 6.0e-86 322.8 568 37.9
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 6.2e-83 312.8 250 61.2
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 1.5e-81 308.1 625 36.3
Nitab4.5_0003430g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 1.0e-77 295.4 217 71.4
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 4.9e-72 276.6 390 44.1
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.1e-68 265.4 381 43.3
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 6.2e-67 259.6 689 31.9
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.1e-62 244.6 243 52.3
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 2.3e-61 241.1 516 36.2
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.3e-61 241.1 238 53.4
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 6.2e-59 233.0 259 54.1
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 6.2e-59 233.0 420 39.5
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 3.8e-56 223.8 438 35.2
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 7.1e-55 219.5 583 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 7.9e-54 216.1 503 32.0
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 2.3e-53 214.5 584 30.3
vmacro07512 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.1e-52 212.2 255 49.4
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 1.3e-51 208.8 206 51.0
Gohir.A04G055921 Gossypium hirsutum HOM05D003892 ORTHO05D004522 3.2e-47 194.1 262 46.9
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-43 181.8 188 51.6
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 9.4e-39 166.0 233 43.3
Actinidia37778 Actinidia chinensis HOM05D003892 ORTHO05D004522 2.6e-33 147.9 254 40.9
arahy.Tifrunner.gnm1.ann1.R2HNIM Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-32 144.4 283 36.4
arahy.Tifrunner.gnm1.ann1.84GXZP Arachis hypogaea HOM05D003892 ORTHO05D004522 8.5e-32 142.9 255 38.4
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 7.2e-31 139.8 95 70.5
arahy.Tifrunner.gnm1.ann1.C1NY7P Arachis hypogaea HOM05D003892 ORTHO05D004522 5.2e-29 133.7 264 36.7
TAR636G1189 Trochodendron aralioides HOM05D003892 ORTHO05D004522 6.7e-29 133.3 205 42.0
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 5.7e-28 130.2 366 29.5
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 7.4e-28 129.8 147 46.9
Aqoxy2G02169 Aquilegia oxysepala HOM05D001785 ORTHO05D001933 1.8e-26 125.2 291 35.7
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.4e-20 104.0 248 33.9
arahy.Tifrunner.gnm1.ann1.Z2YKN3 Arachis hypogaea HOM05D003892 ORTHO05D004522 9.7e-20 102.8 178 38.2
arahy.Tifrunner.gnm1.ann1.U7JCXR Arachis hypogaea HOM05D003892 ORTHO05D004522 1.7e-16 92.0 176 37.5
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 5.0e-16 90.5 83 54.2
Nitab4.5_0000123g0040 Nicotiana tabacum HOM05D003892 ORTHO05D004522 2.5e-15 88.2 112 50.0
ATR1154G016 Amborella trichopoda HOM05D003892 ORTHO05D004522 1.2e-12 79.3 107 40.2
Cre03.g197600 Chlamydomonas reinhardtii HOM05D003892 ORTHO05D004522 5.4e-10 70.5 289 26.0
arahy.Tifrunner.gnm1.ann1.RB1WVK Arachis hypogaea HOM05D003892 ORTHO05D004522 3.5e-09 67.8 157 34.4
Sabra17G0067200 Salix brachista HOM05D003892 ORTHO05D004522 1.0e-08 66.2 91 41.8
ATR1154G039 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.5e-08 63.5 150 32.0
Glyma.10G214400 Glycine max HOM05D003892 ORTHO05D004522 1.6e-06 58.9 39 66.7
CSS0023890 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 3.6e-06 57.8 54 48.1


User provided reference genes

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