Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006630.3 Solanum lycopersicum HOM05D006024 ORTHO05D007505 2.9e-202 708.4 360 100.0
Sopen01g002620 Solanum pennellii HOM05D006024 ORTHO05D007505 1.4e-201 706.1 360 99.2
Nitab4.5_0003796g0050 Nicotiana tabacum HOM05D006024 ORTHO05D007505 1.5e-179 632.9 359 89.4
CAN.G388.68 Capsicum annuum HOM05D006024 ORTHO05D007505 2.8e-173 612.1 388 81.4
Peaxi162Scf00559g00415 Petunia axillaris HOM05D006024 ORTHO05D007505 1.1e-172 610.1 359 86.1
Cc01_g04140 Coffea canephora HOM05D006024 ORTHO05D007505 1.0e-159 567.0 360 76.1
Oeu042179.3 Olea europaea HOM05D006024 ORTHO05D007505 4.8e-157 558.1 360 75.6
GSVIVG01025335001 Vitis vinifera HOM05D006024 ORTHO05D007505 3.4e-155 552.0 360 74.2
MSTRG.21409 Avicennia marina HOM05D006024 ORTHO05D007505 2.1e-152 542.7 358 75.4
Hma1.2p1_2304F.1_g319350 Hydrangea macrophylla HOM05D006024 ORTHO05D007505 4.3e-150 535.0 359 72.4
Manes.14G014400 Manihot esculenta HOM05D006024 ORTHO05D007505 4.3e-150 535.0 361 72.6
CiPaw.13G165500 Carya illinoinensis HOM05D006024 ORTHO05D007505 7.4e-150 534.3 355 73.0
Prupe.6G018500 Prunus persica HOM05D006024 ORTHO05D007505 7.4e-150 534.3 359 71.3
Potri.T085501 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.1e-148 530.4 358 70.1
RcHm_v2.0_Chr5g0078111 Rosa chinensis HOM05D006024 ORTHO05D007505 1.8e-148 529.6 360 72.5
FvH4_3g43551 Fragaria vesca HOM05D006024 ORTHO05D007505 2.4e-148 529.3 360 72.2
Cpa.g.sc84.110 Carica papaya HOM05D006024 ORTHO05D007505 3.1e-148 528.9 360 70.8
Aqoxy1G00184 Aquilegia oxysepala HOM05D006024 ORTHO05D007505 9.1e-148 527.3 360 70.6
CANSAT54G0336 Cannabis sativa HOM05D006024 ORTHO05D007505 9.1e-148 527.3 357 72.3
MD11G1022800 Malus domestica HOM05D006024 ORTHO05D007505 2.0e-147 526.2 356 71.9
CSS0019947 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.6e-147 525.8 360 72.8
CSS0045029 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.6e-147 525.8 360 72.8
TWI60G1552 Tripterygium wilfordii HOM05D006024 ORTHO05D007505 2.6e-147 525.8 360 71.4
Eucgr.J00813 Eucalyptus grandis HOM05D006024 ORTHO05D007505 1.0e-146 523.9 360 70.6
Potri.003G210900 Populus trichocarpa HOM05D006024 ORTHO05D007505 1.0e-146 523.9 358 69.8
PGR119G1295 Punica granatum HOM05D006024 ORTHO05D007505 2.2e-146 522.7 355 72.7
Sed0023125 Sechium edule HOM05D006024 ORTHO05D007505 2.9e-146 522.3 360 71.1
Cfa009695 Carpinus fangiana HOM05D006024 ORTHO05D007505 3.8e-146 521.9 355 72.1
Ciclev10015756m.g Citrus clementina HOM05D006024 ORTHO05D007505 1.9e-145 519.6 356 71.9
Gohir.D06G112300 Gossypium hirsutum HOM05D006024 ORTHO05D007505 1.9e-145 519.6 360 70.3
Gorai.010G128200 Gossypium raimondii HOM05D006024 ORTHO05D007505 1.9e-145 519.6 360 70.3
CsaV3_4G023790 Cucumis sativus L. HOM05D006024 ORTHO05D007505 2.5e-145 519.2 360 71.1
HanXRQChr02g0056471 Helianthus annuus HOM05D006024 ORTHO05D007505 2.5e-145 519.2 357 70.9
PSO339G6331 Papaver somniferum HOM05D006024 ORTHO05D007505 7.2e-145 517.7 361 67.9
MELO3C014640.2 Cucumis melo HOM05D006024 ORTHO05D007505 7.9e-144 514.2 361 70.4
Glyma.13G342800 Glycine max HOM05D006024 ORTHO05D007505 1.4e-143 513.5 358 71.2
Thecc.09G223300 Theobroma cacao HOM05D006024 ORTHO05D007505 5.1e-143 511.5 360 69.4
QL01p006224 Quercus lobata HOM05D006024 ORTHO05D007505 8.8e-143 510.8 385 66.5
DCAR_002037 Daucus carota HOM05D006024 ORTHO05D007505 1.5e-142 510.0 356 69.9
Lj4g0026168 Lotus japonicus HOM05D006024 ORTHO05D007505 2.0e-142 509.6 356 70.2
arahy.Tifrunner.gnm1.ann1.7L1RE9 Arachis hypogaea HOM05D006024 ORTHO05D007505 2.6e-142 509.2 354 69.8
Lj3g0007180 Lotus japonicus HOM05D006024 ORTHO05D007505 7.4e-142 507.7 356 70.2
A05p27990 Brassica napus HOM05D006024 ORTHO05D007505 1.3e-141 506.9 359 68.5
Ca_01271_v3 Cicer arietinum L. HOM05D006024 ORTHO05D007505 2.2e-141 506.1 356 69.9
FAN11G3540 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.8e-141 505.8 363 70.5
MSTRG.12483 Avicennia marina HOM05D006024 ORTHO05D007505 4.8e-141 505.0 356 69.4
Lsat_1_v5_gn_6_50101 Lactuca sativa HOM05D006024 ORTHO05D007505 6.3e-141 504.6 356 69.1
Nn7g36060 Nelumbo nucifera HOM05D006024 ORTHO05D007505 8.2e-141 504.2 360 67.2
Phvul.005G150400 Phaseolus vulgaris HOM05D006024 ORTHO05D007505 8.2e-141 504.2 358 69.6
Atru.chr3.2505 Acer truncatum HOM05D006024 ORTHO05D007505 1.1e-140 503.8 362 69.1
Sp3g18810 Schrenkiella parvula HOM05D006024 ORTHO05D007505 7.0e-140 501.1 356 67.4
Carub.0003s2075 Capsella rubella HOM05D006024 ORTHO05D007505 1.2e-139 500.4 356 67.7
AL3G34710 Arabidopsis lyrata HOM05D006024 ORTHO05D007505 1.5e-139 500.0 356 68.0
Thhalv10021019m.g Eutrema salsugineum HOM05D006024 ORTHO05D007505 1.5e-139 500.0 356 67.1
THA.LOC104816910 Tarenaya hassleriana HOM05D006024 ORTHO05D007505 2.0e-139 499.6 356 67.4
CARHR096620 Cardamine hirsuta HOM05D006024 ORTHO05D007505 2.6e-139 499.2 356 67.4
TPR.G18832 Trifolium pratense HOM05D006024 ORTHO05D007505 2.6e-139 499.2 357 70.0
AT3G20790 Arabidopsis thaliana HOM05D006024 ORTHO05D007505 2.2e-138 496.1 356 67.1
Duzib168G0763 Durio zibethinus HOM05D006024 ORTHO05D007505 7.2e-137 491.1 360 68.1
VMungo1080G1755 Vigna mungo HOM05D004763 ORTHO05D007492 9.4e-137 490.7 358 68.2
COL.COLO4_09894 Corchorus olitorius HOM05D006024 ORTHO05D007505 1.6e-136 490.0 360 66.7
BraA05t21682Z Brassica rapa HOM05D006024 ORTHO05D007505 6.1e-136 488.0 359 66.9
Lalb_Chr24g0396941 Lupinus albus HOM05D006024 ORTHO05D007505 6.1e-136 488.0 356 67.4
BolC5t33061H Brassica oleracea HOM05D006024 ORTHO05D007505 3.0e-135 485.7 356 66.9
BcaB06g26149 Brassica carinata HOM05D006024 ORTHO05D007505 3.9e-135 485.3 356 66.6
BcaC05g28281 Brassica carinata HOM05D006024 ORTHO05D007505 5.2e-135 485.0 356 66.6
Medtr2g098500 Medicago truncatula HOM05D006024 ORTHO05D007505 8.8e-135 484.2 356 68.5
C05p43290 Brassica napus HOM05D006024 ORTHO05D007505 2.6e-134 482.6 356 66.3
Migut.D00559 Erythranthe guttata HOM05D006024 ORTHO05D007505 2.6e-134 482.6 356 68.8
Dinv36303 Davidia involucrata HOM05D006024 ORTHO05D007505 4.4e-134 481.9 317 73.5
Migut.N02293 Erythranthe guttata HOM05D006024 ORTHO05D007505 4.4e-134 481.9 358 67.3
AUR62019251 Chenopodium quinoa HOM05D006024 ORTHO05D007505 4.1e-132 475.3 361 66.5
EL10Ac4g10317 Beta vulgaris HOM05D006024 ORTHO05D007505 5.9e-131 471.5 360 65.3
AUR62000078 Chenopodium quinoa HOM05D006024 ORTHO05D007505 1.7e-130 469.9 361 65.7
Os09g0280300 Oryza sativa ssp. japonica HOM05D006024 ORTHO05D007505 2.2e-130 469.5 357 63.0
Hund22080 Selenicereus undatus HOM05D006024 ORTHO05D007505 1.5e-129 466.8 360 65.6
FAN11G0987 Fragaria x ananassa HOM05D006024 ORTHO05D007505 2.7e-128 462.6 363 66.1
ATR0605G294 Amborella trichopoda HOM05D006024 ORTHO05D007505 2.2e-125 453.0 357 60.5
Aa31LG8G7600 Aethionema arabicum HOM05D006024 ORTHO05D007505 3.7e-125 452.2 355 63.1
Lju1319A3G40 Lonicera japonica HOM05D006024 ORTHO05D007505 4.8e-125 451.8 375 61.9
Gohir.A06G108500 Gossypium hirsutum HOM05D006024 ORTHO05D007505 2.4e-124 449.5 360 63.1
Lj1A365G18 Lonicera japonica HOM05D006024 ORTHO05D007505 3.1e-124 449.1 379 60.9
VMungo0251G0909 Vigna mungo HOM05D006024 ORTHO05D007505 2.0e-123 446.4 358 62.6
vmacro04169 Vaccinium macrocarpon HOM05D006024 ORTHO05D007505 2.2e-122 443.0 473 53.3
VMungo1080G1390 Vigna mungo HOM05D006024 ORTHO05D007505 1.5e-121 440.3 358 60.9
SGA_v2.0_scaffold1G00800 Striga asiatica HOM05D006024 ORTHO05D007505 5.5e-121 438.3 356 64.0
arahy.Tifrunner.gnm1.ann1.3AB71G Arachis hypogaea HOM05D006024 ORTHO05D007505 6.8e-119 431.4 352 62.5
Nitab4.5_0008137g0040 Nicotiana tabacum HOM05D006024 ORTHO05D007505 8.8e-119 431.0 359 67.1
MBI04_g27131_MAGBIO Magnolia biondii HOM05D006024 ORTHO05D007505 4.4e-118 428.7 361 58.2
SEGI_39854 Sequoiadendron giganteum HOM05D006024 ORTHO05D007505 4.5e-115 418.7 356 57.0
unitig_8.g3081 Utricularia gibba HOM05D006024 ORTHO05D007505 1.3e-109 400.6 357 59.4
Rhsim13G0225400 Rhododendron simsii HOM05D006024 ORTHO05D007505 1.2e-99 367.5 258 69.0
Sc06g0004470 Simmondsia chinensis HOM05D006024 ORTHO05D007505 3.5e-99 365.9 257 66.5
Pp3c6_24290 Physcomitrium patens HOM05D006024 ORTHO05D007505 3.0e-98 362.8 351 49.3
ECA233G0904 Erigeron canadensis HOM05D006024 ORTHO05D007505 9.5e-97 357.8 251 68.1
TAR636G0774 Trochodendron aralioides HOM05D006024 ORTHO05D007505 1.1e-95 354.4 252 65.9
Mapoly0150s0011 Marchantia polymorpha HOM05D006024 ORTHO05D007505 7.1e-92 341.7 357 47.3
Pp3c16_13070 Physcomitrium patens HOM05D006024 ORTHO05D007505 4.7e-88 328.9 374 45.2
AagrBONN_evm.TU.Sc2ySwM_344.3372 Anthoceros agrestis HOM05D006024 ORTHO05D007505 9.9e-86 321.2 355 46.5
Haze_23046 Corylus avellana HOM05D006024 ORTHO05D007505 1.3e-85 320.9 293 58.0
SMO116G0160 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 1.2e-80 304.3 364 45.1
SMO146G0097 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.8e-79 298.5 343 42.3
Zm00001eb094580 Zea mays HOM05D006024 ORTHO05D007505 2.9e-77 293.1 204 66.7
ClCG02G023630 Citrullus lanatus HOM05D006024 ORTHO05D007505 9.3e-76 288.1 201 69.7
SMO144G0113 Selaginella moellendorffii HOM05D006024 ORTHO05D007505 6.6e-74 282.0 343 42.0
AagrBONN_evm.TU.Sc2ySwM_344.254 Anthoceros agrestis HOM05D006024 ORTHO05D007505 3.1e-71 273.1 355 40.3
Pp3c3_20310 Physcomitrium patens HOM05D006024 ORTHO05D007505 6.9e-71 271.9 360 40.8
Mapoly0033s0066 Marchantia polymorpha HOM05D006024 ORTHO05D007505 6.0e-67 258.8 354 41.2
FAN16G2307 Fragaria x ananassa HOM05D006024 ORTHO05D007505 1.1e-49 201.4 149 69.8
HPP92_000457 Vanilla planifolia HOM05D006024 ORTHO05D007505 7.2e-44 182.2 148 60.8
TAR636G1381 Trochodendron aralioides HOM05D006024 ORTHO05D007505 2.4e-39 167.2 186 52.2
Psat7g086040 Pisum sativum HOM05D006024 ORTHO05D007505 3.8e-37 159.8 224 43.8
Cre01.g023300 Chlamydomonas reinhardtii HOM05D006024 ORTHO05D007505 1.9e-36 157.5 404 30.4
Sc06g0004480 Simmondsia chinensis HOM05D006024 ORTHO05D007505 2.3e-34 150.6 104 69.2
ECA233G1997 Erigeron canadensis HOM05D006024 ORTHO05D007505 1.3e-32 144.8 98 72.4
Psat6g204000 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-30 137.5 153 52.3
Psat5g288680 Pisum sativum HOM05D006024 ORTHO05D007505 2.5e-28 130.6 93 71.0
Rhsim13G0225300 Rhododendron simsii HOM05D006024 ORTHO05D007505 3.2e-28 130.2 83 74.7
Cfa023900 Carpinus fangiana HOM05D006024 ORTHO05D007505 9.4e-28 128.6 357 28.3
FAN25G0441 Fragaria x ananassa HOM05D006024 ORTHO05D007505 3.9e-26 123.2 128 50.0
Glyma.15G031500 Glycine max HOM05D006024 ORTHO05D007505 5.1e-26 122.9 136 54.4
Actinidia16298 Actinidia chinensis HOM05D006024 ORTHO05D007505 1.3e-24 118.2 91 62.6
Medtr8g016390 Medicago truncatula HOM05D006024 ORTHO05D007505 2.6e-22 110.5 98 60.2
CSS0042824 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 2.5e-20 104.0 87 63.2
CSS0049558 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 4.2e-20 103.2 87 63.2
C01p43430 Brassica napus HOM05D006024 ORTHO05D007505 8.0e-19 99.0 105 49.5
BolC1t04302H Brassica oleracea HOM05D006024 ORTHO05D007505 8.0e-19 99.0 105 49.5
Psat5g288640 Pisum sativum HOM05D006024 ORTHO05D007505 2.0e-17 94.4 131 46.6
CSS0043067 Camellia sinensis var. sinensis HOM05D006024 ORTHO05D007505 1.8e-15 87.8 83 57.8
Oeu037561.1 Olea europaea HOM05D006024 ORTHO05D007505 3.8e-13 80.1 51 68.6
BcaC09g49021 Brassica carinata HOM05D006024 ORTHO05D007505 1.6e-11 74.7 92 50.0
Cfa023857 Carpinus fangiana HOM05D057041 ORTHO05D018939 2.0e-06 57.8 204 24.0
Mapoly0041s0070 Marchantia polymorpha HOM05D057041 ORTHO05D018939 3.5e-06 57.0 212 22.6


User provided reference genes

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