Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006480.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.3e-131 473.0 237 100.0
Sopen01g002460 Solanum pennellii HOM05D004698 ORTHO05D005699 5.1e-131 471.1 237 99.2
PGSC0003DMG400032153 Solanum tuberosum HOM05D004698 ORTHO05D005699 6.6e-123 444.1 237 92.8
CAN.G649.13 Capsicum annuum HOM05D004698 ORTHO05D005699 2.5e-114 415.6 237 86.1
Nitab4.5_0013751g0010 Nicotiana tabacum HOM05D004698 ORTHO05D005699 8.7e-107 390.6 237 83.1
Nitab4.5_0001146g0120 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.1e-104 383.6 237 81.0
Peaxi162Scf00403g00114 Petunia axillaris HOM05D004698 ORTHO05D005699 7.4e-98 360.9 225 81.3
MELO3C015673.2 Cucumis melo HOM05D004698 ORTHO05D005699 3.9e-91 338.6 232 71.6
CsaV3_1G042380 Cucumis sativus L. HOM05D004698 ORTHO05D005699 3.9e-91 338.6 232 71.1
Prupe.6G018000 Prunus persica HOM05D004698 ORTHO05D005699 8.8e-91 337.4 232 71.1
Ciclev10016541m.g Citrus clementina HOM05D004698 ORTHO05D005699 4.3e-90 335.1 232 69.8
RcHm_v2.0_Chr5g0080391 Rosa chinensis HOM05D004698 ORTHO05D005699 1.3e-89 333.6 232 69.0
MD03G1018500 Malus domestica HOM05D004698 ORTHO05D005699 6.3e-89 331.3 232 72.8
Dinv08060 Davidia involucrata HOM05D004698 ORTHO05D005699 8.2e-89 330.9 237 69.2
Cfa009658 Carpinus fangiana HOM05D004698 ORTHO05D005699 1.4e-88 330.1 232 69.4
QL01p009119 Quercus lobata HOM05D004698 ORTHO05D005699 3.1e-88 328.9 231 68.8
Aqoxy1G00174 Aquilegia oxysepala HOM05D004698 ORTHO05D005699 4.1e-88 328.6 237 68.4
ClCG03G013670 Citrullus lanatus HOM05D004698 ORTHO05D005699 9.1e-88 327.4 228 69.3
Sc09g0000410 Simmondsia chinensis HOM05D004698 ORTHO05D005699 2.0e-87 326.2 237 67.5
FAN25G1145 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.4e-87 325.5 231 68.4
FvH4_3g44090 Fragaria vesca HOM05D004698 ORTHO05D005699 4.5e-87 325.1 232 67.7
FAN16G2726 Fragaria x ananassa HOM05D004698 ORTHO05D005699 7.7e-87 324.3 232 67.7
FAN11G2375 Fragaria x ananassa HOM05D004698 ORTHO05D005699 2.9e-86 322.4 232 66.8
Manes.06G169600 Manihot esculenta HOM05D004698 ORTHO05D005699 2.9e-86 322.4 232 67.2
Manes.14G015500 Manihot esculenta HOM05D004698 ORTHO05D005699 2.9e-86 322.4 232 67.2
FAN21G3006 Fragaria x ananassa HOM05D004698 ORTHO05D005699 3.8e-86 322.0 232 67.7
AL6G31140 Arabidopsis lyrata HOM05D004698 ORTHO05D005699 5.0e-86 321.6 237 64.6
Potri.003G212400 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.5e-86 320.9 232 68.1
Potri.T056064 Populus trichocarpa HOM05D004698 ORTHO05D005699 8.5e-86 320.9 232 68.1
Sed0023233 Sechium edule HOM05D004698 ORTHO05D005699 1.1e-85 320.5 232 68.5
Nn2g15650 Nelumbo nucifera HOM05D004698 ORTHO05D005699 1.4e-85 320.1 237 65.8
Duzib150G1219 Durio zibethinus HOM05D004698 ORTHO05D005699 1.9e-85 319.7 232 69.0
TAR633G2590 Trochodendron aralioides HOM05D004698 ORTHO05D005699 1.9e-85 319.7 231 67.5
TWI60G0418 Tripterygium wilfordii HOM05D004698 ORTHO05D005699 2.5e-85 319.3 232 69.0
AUR62000051 Chenopodium quinoa HOM05D004698 ORTHO05D005699 3.2e-85 318.9 230 68.3
PGR102G0099 Punica granatum HOM05D004698 ORTHO05D005699 4.2e-85 318.5 234 65.8
Sabra03G0155400 Salix brachista HOM05D004698 ORTHO05D005699 4.2e-85 318.5 232 68.1
Actinidia22026 Actinidia chinensis HOM05D004698 ORTHO05D005699 5.5e-85 318.2 229 65.1
THA.LOC104811123 Tarenaya hassleriana HOM05D004698 ORTHO05D005699 5.5e-85 318.2 237 64.6
AT5G19630 Arabidopsis thaliana HOM05D004698 ORTHO05D005699 7.2e-85 317.8 237 64.1
Eucgr.B03647 Eucalyptus grandis HOM05D004698 ORTHO05D005699 7.2e-85 317.8 232 65.5
Potri.001G013700 Populus trichocarpa HOM05D004698 ORTHO05D005699 1.6e-84 316.6 232 66.8
Sabra03G0158600 Salix brachista HOM05D004698 ORTHO05D005699 1.6e-84 316.6 232 67.7
Ah.06g193310 Amaranthus hybridus HOM05D004698 ORTHO05D005699 2.1e-84 316.2 230 67.4
CARHR193280 Cardamine hirsuta HOM05D004698 ORTHO05D005699 3.6e-84 315.5 237 63.7
CANSAT54G0070 Cannabis sativa HOM05D004698 ORTHO05D005699 1.4e-83 313.5 222 68.9
Duzib168G2110 Durio zibethinus HOM05D004698 ORTHO05D005699 1.8e-83 313.2 232 66.4
Medtr8g092560 Medicago truncatula HOM05D004698 ORTHO05D005699 1.8e-83 313.2 238 65.5
Thecc.09G219100 Theobroma cacao HOM05D004698 ORTHO05D005699 2.3e-83 312.8 231 67.5
PSO339G6590 Papaver somniferum HOM05D004698 ORTHO05D005699 3.0e-83 312.4 232 65.1
Atru.chr3.2431 Acer truncatum HOM05D004698 ORTHO05D005699 5.1e-83 311.6 232 65.9
Gorai.013G249300 Gossypium raimondii HOM05D004698 ORTHO05D005699 5.1e-83 311.6 232 66.4
Atru.chr3.2436 Acer truncatum HOM05D004698 ORTHO05D005699 8.8e-83 310.8 232 65.5
Lalb_Chr06g0164501 Lupinus albus HOM05D004698 ORTHO05D005699 1.1e-82 310.5 234 65.8
MD11G1019500 Malus domestica HOM05D004698 ORTHO05D005699 1.5e-82 310.1 256 63.7
Hund21659 Selenicereus undatus HOM05D004698 ORTHO05D005699 1.5e-82 310.1 228 65.8
Carub.0006s1798 Capsella rubella HOM05D004698 ORTHO05D005699 2.0e-82 309.7 237 62.4
EL10Ac4g10324 Beta vulgaris HOM05D004698 ORTHO05D005699 2.6e-82 309.3 230 64.8
AUR62019223 Chenopodium quinoa HOM05D004698 ORTHO05D005699 2.6e-82 309.3 230 67.4
VMungo0720G2032 Vigna mungo HOM05D004698 ORTHO05D005699 2.6e-82 309.3 237 65.0
Glyma.20G247000 Glycine max HOM05D004698 ORTHO05D005699 3.3e-82 308.9 237 65.4
CiPaw.13G168500 Carya illinoinensis HOM05D004698 ORTHO05D005699 4.4e-82 308.5 219 68.0
Lj5g0001870 Lotus japonicus HOM05D004698 ORTHO05D005699 4.4e-82 308.5 231 67.5
TPR.G32598 Trifolium pratense HOM05D004698 ORTHO05D005699 4.4e-82 308.5 234 65.4
Gohir.A13G214800 Gossypium hirsutum HOM05D004698 ORTHO05D005699 7.4e-82 307.8 232 65.5
A03p09560 Brassica napus HOM05D004698 ORTHO05D005699 9.7e-82 307.4 236 62.7
BraA03t10273Z Brassica rapa HOM05D004698 ORTHO05D005699 9.7e-82 307.4 236 62.7
Actinidia40436 Actinidia chinensis HOM05D004698 ORTHO05D005699 2.2e-81 306.2 229 62.9
MSTRG.26088 Avicennia marina HOM05D004698 ORTHO05D005699 2.8e-81 305.8 236 62.3
Aa31LG7G13160 Aethionema arabicum HOM05D004698 ORTHO05D005699 3.7e-81 305.4 237 61.6
Thhalv10014585m.g Eutrema salsugineum HOM05D004698 ORTHO05D005699 3.7e-81 305.4 232 63.4
BolC3t13583H Brassica oleracea HOM05D004698 ORTHO05D005699 4.8e-81 305.1 236 61.4
C03p11130 Brassica napus HOM05D004698 ORTHO05D005699 6.3e-81 304.7 236 61.4
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 8.2e-81 304.3 231 64.5
BcaB01g04838 Brassica carinata HOM05D004698 ORTHO05D005699 1.4e-80 303.5 231 62.3
Lalb_Chr02g0144411 Lupinus albus HOM05D004698 ORTHO05D005699 2.4e-80 302.8 235 64.7
Phvul.007G003200 Phaseolus vulgaris HOM05D004698 ORTHO05D005699 2.4e-80 302.8 237 65.0
Hma1.2p1_0183F.1_g080820 Hydrangea macrophylla HOM05D004698 ORTHO05D005699 3.1e-80 302.4 233 63.1
Sp6g24760 Schrenkiella parvula HOM05D004698 ORTHO05D005699 3.1e-80 302.4 236 61.0
Hund07554 Selenicereus undatus HOM05D004698 ORTHO05D005699 3.1e-80 302.4 229 65.1
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 7.0e-80 301.2 236 59.7
arahy.Tifrunner.gnm1.ann1.5V818H Arachis hypogaea HOM05D004698 ORTHO05D005699 2.0e-79 299.7 232 63.4
arahy.Tifrunner.gnm1.ann1.Y8WF3A Arachis hypogaea HOM05D004698 ORTHO05D005699 2.0e-79 299.7 232 63.4
Gohir.D05G069500 Gossypium hirsutum HOM05D004698 ORTHO05D005699 4.5e-79 298.5 232 64.2
CDE10G0673 Ceratophyllum demersum HOM05D004698 ORTHO05D005699 1.7e-78 296.6 231 62.8
Gorai.009G070500 Gossypium raimondii HOM05D004698 ORTHO05D005699 2.2e-78 296.2 232 63.8
DCAR_003213 Daucus carota HOM05D004698 ORTHO05D005699 6.5e-78 294.7 232 61.6
Zm00001eb252760 Zea mays HOM05D004698 ORTHO05D005699 8.5e-78 294.3 225 64.9
BcaC03g13695 Brassica carinata HOM05D004698 ORTHO05D005699 1.5e-77 293.5 236 60.2
Lsat_1_v5_gn_9_26700 Lactuca sativa HOM05D004698 ORTHO05D005699 1.5e-77 293.5 232 60.3
ATR0605G157 Amborella trichopoda HOM05D004698 ORTHO05D005699 4.2e-77 292.0 235 62.6
Lju124A28T33 Lonicera japonica HOM05D004698 ORTHO05D005699 5.5e-77 291.6 232 62.5
Os02g0717100 Oryza sativa ssp. japonica HOM05D004698 ORTHO05D005699 1.6e-76 290.0 225 62.7
Gohir.A05G066748 Gossypium hirsutum HOM05D004698 ORTHO05D005699 6.1e-76 288.1 232 62.5
ECA247G2042 Erigeron canadensis HOM05D004698 ORTHO05D005699 1.8e-75 286.6 232 60.8
AagrBONN_evm.TU.Sc2ySwM_228.4678 Anthoceros agrestis HOM05D004698 ORTHO05D005699 1.5e-74 283.5 230 57.4
HanXRQChr10g0300701 Helianthus annuus HOM05D004698 ORTHO05D005699 1.5e-74 283.5 232 60.8
SGA_v2.0_scaffold94G28426 Striga asiatica HOM05D004698 ORTHO05D005699 2.0e-74 283.1 228 58.8
Lj2C370G0 Lonicera japonica HOM05D004698 ORTHO05D005699 2.6e-74 282.7 237 59.5
SEGI_09892 Sequoiadendron giganteum HOM05D004698 ORTHO05D005699 9.7e-74 280.8 228 60.5
Peaxi162Scf00258g00313 Petunia axillaris HOM05D004698 ORTHO05D005699 2.2e-73 279.6 237 59.5
Sopen03g015850 Solanum pennellii HOM05D004698 ORTHO05D005699 3.7e-73 278.9 235 57.4
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 6.3e-73 278.1 229 57.6
Solyc03g063290.3 Solanum lycopersicum HOM05D004698 ORTHO05D005699 1.1e-72 277.3 235 57.0
Psat6g242840 Pisum sativum HOM05D004698 ORTHO05D005699 3.1e-72 275.8 237 59.5
Manes.08G046200 Manihot esculenta HOM05D004698 ORTHO05D005699 5.3e-72 275.0 231 60.6
COL.COLO4_10392 Corchorus olitorius HOM05D004698 ORTHO05D005699 7.0e-72 274.6 333 47.4
Manes.08G045900 Manihot esculenta HOM05D004698 ORTHO05D005699 7.0e-72 274.6 232 59.5
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 1.2e-71 273.9 236 57.6
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 2.0e-71 273.1 235 56.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 3.5e-71 272.3 235 56.6
unitig_0.g767 Utricularia gibba HOM05D004698 ORTHO05D005699 5.9e-71 271.6 229 55.0
Psat2g056640 Pisum sativum HOM05D004698 ORTHO05D005699 1.1e-69 267.3 237 58.2
vmacro07926 Vaccinium macrocarpon HOM05D004698 ORTHO05D005699 1.9e-69 266.5 316 45.6
Mapoly0046s0043 Marchantia polymorpha HOM05D004698 ORTHO05D005699 1.2e-68 263.8 230 54.3
BcaB05g23400 Brassica carinata HOM05D004698 ORTHO05D005699 6.1e-68 261.5 235 54.5
CAN.G364.5 Capsicum annuum HOM05D004698 ORTHO05D005699 1.0e-67 260.8 234 54.3
Pp3c7_25270 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.0e-66 256.5 193 60.1
Sabra01G0010100 Salix brachista HOM05D004698 ORTHO05D005699 2.0e-66 256.5 364 42.3
SMO117G0218 Selaginella moellendorffii HOM05D004698 ORTHO05D005699 9.7e-66 254.2 226 53.1
Pp3c25_340 Physcomitrium patens HOM05D004698 ORTHO05D005699 2.8e-65 252.7 225 55.1
GSVIVG01025354001 Vitis vinifera HOM05D004698 ORTHO05D005699 1.3e-62 243.8 153 75.2
SHI30529 Sapria himalayana HOM05D004698 ORTHO05D005699 1.5e-61 240.4 235 53.6
MBI01_g33892_MAGBIO Magnolia biondii HOM05D004698 ORTHO05D005699 3.2e-61 239.2 191 61.8
Cc06_g16050 Coffea canephora HOM05D004698 ORTHO05D005699 9.8e-58 227.6 153 68.0
BNapus_Darmor_BZH_scaffold_38p02250 Brassica napus HOM05D004698 ORTHO05D005699 7.0e-56 221.5 152 69.1
Dinv36316 Davidia involucrata HOM05D004698 ORTHO05D005699 4.2e-53 212.2 154 69.5
BolC2t06975H Brassica oleracea HOM05D004698 ORTHO05D005699 4.7e-52 208.8 152 65.8
Cc01_g03800 Coffea canephora HOM05D004698 ORTHO05D005699 2.3e-51 206.5 130 76.9
SalBow1G8507 Salvia bowleyana HOM05D004698 ORTHO05D005699 8.9e-51 204.5 185 53.0
HPP92_022782 Vanilla planifolia HOM05D004698 ORTHO05D005699 7.5e-50 201.4 177 55.9
TAR636G0496 Trochodendron aralioides HOM05D004698 ORTHO05D005699 3.9e-46 189.1 125 72.0
Glyma.18G020100 Glycine max HOM05D004698 ORTHO05D005699 2.5e-45 186.4 188 55.3
Haze_23028 Corylus avellana HOM05D004698 ORTHO05D005699 2.0e-42 176.8 231 45.0
CSS0002150 Camellia sinensis var. sinensis HOM05D004698 ORTHO05D005699 3.4e-42 176.0 107 75.7
A02p05700 Brassica napus HOM05D004698 ORTHO05D005699 1.4e-40 170.6 111 73.9
BraA02t05522Z Brassica rapa HOM05D004698 ORTHO05D005699 1.4e-40 170.6 111 73.9
Cpa.g.sc117.1 Carica papaya HOM05D004698 ORTHO05D005699 1.3e-38 164.1 101 72.3
Manes.10G126700 Manihot esculenta HOM05D004698 ORTHO05D005699 6.6e-38 161.8 125 64.0
Nn7g36023 Nelumbo nucifera HOM05D004698 ORTHO05D005699 2.8e-36 156.4 131 59.5
MD03G1017600 Malus domestica HOM05D004698 ORTHO05D005699 3.1e-35 152.9 95 73.7
Eucgr.L01569 Eucalyptus grandis HOM05D004698 ORTHO05D005699 4.4e-34 149.1 124 58.1
Duzib170G0131 Durio zibethinus HOM05D004698 ORTHO05D005699 1.4e-32 144.1 126 61.1
MD03G1115900 Malus domestica HOM05D004698 ORTHO05D005699 1.2e-31 141.0 124 60.5
PRCOL_00006777 Prasinoderma coloniale HOM05D004698 ORTHO05D005699 4.6e-31 139.0 192 34.9
RcHm_v2.0_Chr5g0080421 Rosa chinensis HOM05D004698 ORTHO05D005699 2.5e-29 133.3 88 70.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 8.3e-25 118.2 113 53.1
Dinv15836 Davidia involucrata HOM05D004698 ORTHO05D005699 5.1e-22 109.0 81 66.7
Sabra16G0026900 Salix brachista HOM05D004698 ORTHO05D005699 2.8e-20 103.2 135 46.7
RcHm_v2.0_Chr1g0343461 Rosa chinensis HOM05D004698 ORTHO05D005699 7.8e-15 85.1 57 71.9
Potri.006G191700 Populus trichocarpa HOM05D004698 ORTHO05D005699 5.6e-13 79.0 92 44.6
MD03G1017500 Malus domestica HOM05D004698 ORTHO05D005699 1.4e-11 74.3 61 59.0
MD13G1112600 Malus domestica HOM05D000829 ORTHO05D000690 7.9e-07 58.5 48 58.3


User provided reference genes

Program Settings