Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 6.9e-221 770.4 406 100.0
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 5.9e-220 767.3 406 99.5
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.9e-217 756.9 406 98.0
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 3.1e-205 718.4 406 91.6
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 5.2e-192 674.5 406 84.5
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.0e-184 650.2 406 81.3
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 4.9e-182 641.3 404 83.2
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 3.1e-181 638.6 406 82.0
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.3e-178 628.6 406 78.3
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.2e-176 621.3 406 77.6
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 3.7e-174 615.1 406 78.1
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 3.7e-174 615.1 406 78.6
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 4.1e-173 611.7 406 76.6
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 1.2e-172 610.1 406 75.1
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 2.0e-172 609.4 401 78.1
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-171 606.3 406 74.6
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-171 606.3 406 74.6
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-171 606.3 406 74.6
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 1.7e-171 606.3 407 75.2
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 3.9e-171 605.1 406 76.4
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 2.5e-170 602.4 403 76.9
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 7.3e-170 600.9 401 76.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 2.8e-169 599.0 421 71.7
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 1.8e-168 596.3 406 76.8
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 1.8e-168 596.3 407 75.2
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.1e-168 595.5 406 76.6
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 4.0e-168 595.1 409 76.3
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 6.8e-168 594.3 406 73.9
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 1.2e-167 593.6 409 74.6
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 7.5e-167 590.9 401 76.6
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 9.8e-167 590.5 406 73.6
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 2.9e-166 589.0 401 73.8
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 4.9e-166 588.2 410 74.9
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 1.4e-165 586.6 402 74.6
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.4e-165 585.9 410 73.2
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.2e-165 585.5 406 72.4
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 3.2e-165 585.5 401 74.8
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 7.0e-165 584.3 400 75.5
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 9.2e-165 583.9 410 73.9
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 1.2e-164 583.6 407 73.0
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 1.2e-164 583.6 407 73.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.2e-164 583.6 406 73.6
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 2.7e-164 582.4 406 73.6
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.5e-164 582.0 406 72.4
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.5e-164 582.0 410 73.7
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.0e-163 580.5 410 72.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.0e-163 580.5 406 73.6
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 1.3e-163 580.1 408 73.0
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 1.7e-163 579.7 406 72.4
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 1.7e-163 579.7 410 72.0
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.3e-163 579.3 406 73.4
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.3e-163 579.3 451 67.2
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 3.0e-163 578.9 410 72.2
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 3.0e-163 578.9 406 71.7
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 3.0e-163 578.9 402 73.6
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 5.0e-163 578.2 407 74.0
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.6e-163 577.4 410 71.7
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 8.6e-163 577.4 408 72.1
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.9e-162 576.2 410 72.2
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 1.9e-162 576.2 408 71.8
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 1.9e-162 576.2 408 71.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 2.5e-162 575.9 406 71.9
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 2.5e-162 575.9 406 73.2
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 3.3e-162 575.5 454 68.3
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 5.6e-162 574.7 410 71.5
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 2.8e-161 572.4 406 73.2
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.4e-160 570.1 444 69.1
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.4e-160 570.1 405 73.8
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.8e-160 569.7 401 72.8
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 1.8e-160 569.7 400 72.2
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.5e-159 566.6 403 72.2
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 3.4e-159 565.5 406 71.4
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 3.4e-159 565.5 406 73.9
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 4.4e-159 565.1 406 71.4
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 5.8e-159 564.7 406 71.7
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 5.8e-159 564.7 401 73.8
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 9.9e-159 563.9 401 72.3
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 2.9e-158 562.4 406 70.9
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 4.9e-158 561.6 406 70.9
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 8.3e-158 560.8 404 69.8
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 1.9e-157 559.7 407 72.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 2.4e-157 559.3 402 71.6
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 3.2e-157 558.9 410 72.2
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 70.9
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 5.4e-157 558.1 407 73.5
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.7e-156 555.8 412 69.9
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.0e-156 554.7 406 70.9
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 6.0e-156 554.7 402 72.1
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 7.8e-156 554.3 401 70.6
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.3e-155 553.5 412 70.4
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 1.3e-155 553.5 401 70.6
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.7e-155 553.1 406 69.7
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 1.7e-155 553.1 406 69.7
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 2.3e-155 552.7 407 70.8
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.6e-155 551.2 406 69.5
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.1e-154 550.4 406 70.2
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 5.6e-154 548.1 401 68.8
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 7.3e-154 547.7 441 64.2
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-153 546.6 406 66.5
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 1.6e-153 546.6 402 70.9
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 8.1e-153 544.3 390 70.5
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 5.2e-152 541.6 399 67.9
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 1.2e-151 540.4 406 68.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.0e-151 539.7 432 64.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.4e-151 538.9 408 71.3
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.4e-151 538.5 406 68.0
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 1.3e-150 537.0 401 68.8
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 3.2e-149 532.3 406 68.7
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 1.2e-148 530.4 407 70.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 1.6e-148 530.0 399 65.9
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 1.5e-146 523.5 406 64.3
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 7.3e-146 521.2 406 65.0
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 8.4e-142 507.7 406 66.0
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 8.4e-142 507.7 443 67.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 2.1e-140 503.1 399 63.7
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.7e-140 502.7 417 67.9
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 2.3e-139 499.6 406 60.3
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 3.3e-138 495.7 403 67.0
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 4.9e-134 481.9 296 82.1
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 3.9e-131 472.2 362 64.9
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 6.7e-131 471.5 519 53.8
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 1.3e-123 447.2 335 71.0
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 3.9e-123 445.7 362 64.6
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 6.2e-121 438.3 378 61.6
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 1.5e-114 417.2 405 58.8
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 2.5e-114 416.4 435 55.4
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 6.3e-113 411.8 406 53.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.1e-108 396.7 408 52.9
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 2.1e-108 396.7 408 52.9
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 5.3e-96 355.5 404 54.7
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 7.2e-93 345.1 400 48.2
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 2.0e-90 337.0 408 45.6
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.5e-82 310.8 406 48.3
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 4.1e-80 302.8 203 76.8
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 2.5e-69 266.9 430 41.6
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 4.0e-67 259.6 358 43.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 3.5e-63 246.5 277 53.8
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 2.3e-59 233.8 299 44.8
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.1e-53 214.9 147 74.8
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 7.5e-42 175.6 143 67.1
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 7.6e-34 149.1 102 75.5
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 7.6e-26 122.5 421 30.4
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 1.3e-25 121.7 128 51.6
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 1.1e-24 118.6 95 60.0
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 5.4e-24 116.3 82 79.3
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 3.5e-23 113.6 70 78.6
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 4.3e-21 106.7 187 40.1
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.1e-19 102.1 95 57.9
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 1.8e-19 101.3 73 69.9
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 8.4e-17 92.4 441 25.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 5.4e-16 89.7 374 26.2
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 1.6e-15 88.2 84 57.1
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 1.3e-14 85.1 258 29.1
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 3.9e-14 83.6 68 55.9
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 4.3e-13 80.1 456 22.1
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 1.5e-10 71.6 55 69.1
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 6.0e-07 59.7 86 41.9
A02p41980 Brassica napus HOM05D028671 ORTHO05D005321 7.9e-07 59.3 71 43.7
CAN.G73.7 Capsicum annuum HOM05D003767 ORTHO05D000047 1.3e-06 58.5 47 70.2
Rhsim03G0259700 Rhododendron simsii HOM05D004576 ORTHO05D005321 3.9e-06 57.0 28 85.7


User provided reference genes

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