Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 2.7e-294 1014.6 515 100.0
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.6e-286 988.8 515 97.7
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 2.0e-273 945.3 515 93.2
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 1.4e-237 826.2 518 82.0
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-233 812.4 515 81.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.2e-225 786.6 551 75.0
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 1.2e-188 663.7 521 66.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 3.6e-174 615.5 504 62.5
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 8.9e-173 610.9 517 62.7
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 7.5e-172 607.8 505 61.4
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 4.1e-170 602.1 512 59.4
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 1.6e-169 600.1 505 61.6
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 7.8e-169 597.8 510 61.0
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 1.0e-168 597.4 355 83.7
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 5.1e-168 595.1 506 61.1
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 6.6e-168 594.7 516 60.7
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 8.6e-168 594.3 534 58.8
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.3e-167 592.4 504 60.5
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 1.6e-166 590.1 507 60.9
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 1.4e-165 587.0 507 60.0
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 2.4e-165 586.3 511 61.3
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.0e-165 585.5 520 59.8
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 2.6e-164 582.8 499 60.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 2.6e-164 582.8 500 59.8
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.4e-164 582.4 511 60.9
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-163 580.5 503 60.4
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.3e-163 580.5 515 58.3
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.9e-163 579.3 504 59.3
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 4.2e-162 575.5 506 60.3
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 5.4e-162 575.1 505 60.2
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 9.2e-162 574.3 502 61.6
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 1.6e-161 573.5 502 62.0
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 2.1e-161 573.2 512 58.4
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 3.5e-161 572.4 503 59.6
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 4.6e-161 572.0 500 59.2
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 6.0e-161 571.6 503 58.6
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 7.8e-161 571.2 492 59.8
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 1.3e-160 570.5 501 58.3
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 2.3e-160 569.7 503 59.0
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 5.1e-160 568.5 504 60.3
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 1.1e-159 567.4 507 58.4
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.2e-158 563.9 502 58.2
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 1.6e-158 563.5 513 58.1
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 1.6e-158 563.5 502 57.2
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 2.1e-158 563.1 503 59.0
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 2.1e-158 563.1 514 57.8
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 4.7e-158 562.0 502 57.6
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.7e-158 562.0 504 58.9
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 6.2e-158 561.6 502 59.0
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 1.1e-157 560.8 508 58.7
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 1.4e-157 560.5 508 57.9
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 5.3e-157 558.5 506 57.1
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 6.9e-157 558.1 512 57.6
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.2e-156 557.4 504 58.9
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.5e-156 557.0 512 58.8
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 2.6e-156 556.2 505 56.8
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 2.6e-156 556.2 505 56.8
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 3.4e-156 555.8 579 55.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.9e-155 552.0 504 57.5
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 1.4e-154 550.4 510 57.6
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 4.2e-154 548.9 500 55.0
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 4.2e-154 548.9 500 55.0
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 7.1e-154 548.1 504 58.1
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 1.2e-153 547.4 500 55.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.6e-153 547.0 504 55.8
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 2.1e-153 546.6 504 55.8
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 1.3e-152 543.9 501 56.7
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.3e-152 543.9 500 56.8
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.3e-150 537.3 500 54.8
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.4e-149 533.9 505 57.2
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.5e-148 530.4 505 56.4
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 7.6e-148 528.1 514 55.4
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 7.6e-148 528.1 504 55.8
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 2.9e-147 526.2 457 60.6
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 4.9e-147 525.4 503 56.7
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.4e-147 524.6 470 58.1
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.6e-145 520.4 503 55.9
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 9.6e-143 511.1 506 54.0
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 4.8e-142 508.8 513 56.3
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 9.0e-141 504.6 504 54.2
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 1.5e-140 503.8 449 58.4
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 2.9e-139 499.6 460 57.6
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.8e-136 490.3 460 56.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 5.1e-136 488.8 459 56.4
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 3.3e-135 486.1 484 52.7
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 2.1e-134 483.4 459 56.2
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 2.8e-134 483.0 448 56.2
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 2.0e-132 476.9 503 51.5
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.9e-130 470.3 496 51.2
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 1.6e-126 457.2 494 50.0
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-125 453.8 422 58.5
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 3.1e-125 453.0 362 61.9
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 2.6e-124 449.9 393 59.3
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 2.7e-121 439.9 392 58.2
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 9.4e-114 414.8 493 48.5
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 5.1e-112 409.1 384 56.0
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.4e-109 401.0 501 48.7
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.2e-108 397.9 389 54.0
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.0e-107 392.5 503 47.3
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 1.5e-106 391.0 515 45.2
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 1.2e-105 387.9 394 52.5
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.8e-104 384.0 503 41.9
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 6.7e-104 382.1 511 42.5
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 1.1e-103 381.3 343 56.6
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-102 377.9 344 59.3
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 3.7e-102 376.3 352 55.7
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 7.7e-100 368.6 600 41.0
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-96 358.2 395 49.6
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 4.0e-96 356.3 445 46.7
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 2.7e-92 343.6 502 40.6
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.9e-91 340.1 321 54.2
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.2e-90 336.7 265 66.0
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 1.6e-84 317.8 302 53.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 8.6e-83 312.0 342 51.5
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-82 311.6 293 56.7
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 2.0e-79 300.8 253 62.5
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.8e-79 298.5 375 48.0
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 9.8e-79 298.5 367 44.4
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-77 295.0 272 58.1
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 6.6e-75 285.8 241 63.1
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 9.5e-74 282.0 245 56.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-72 278.1 241 60.2
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.4e-72 278.1 584 35.4
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-71 275.0 361 46.3
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.4e-61 239.6 223 53.8
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 3.9e-59 233.4 370 40.8
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-58 231.9 160 68.1
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-58 230.7 178 63.5
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.1e-56 223.8 198 63.6
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.4e-55 220.3 184 62.5
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.9e-54 217.2 217 54.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 3.7e-54 216.9 405 38.5
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 8.3e-54 215.7 268 49.6
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 3.5e-52 210.3 196 54.6
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.0e-48 196.8 193 55.4
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 1.2e-47 195.3 516 30.2
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-46 190.7 206 54.4
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.3e-43 181.8 226 47.8
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 3.8e-38 163.7 119 75.6
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 3.2e-37 160.6 114 66.7
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 6.0e-36 156.4 152 51.3
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 1.3e-33 148.7 486 27.8
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.5e-31 141.7 620 26.9
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 6.4e-30 136.3 104 67.3
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-28 132.1 118 60.2
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-28 130.6 118 59.3
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-27 127.5 118 57.6
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 8.1e-25 119.4 151 42.4
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 3.1e-24 117.5 96 63.5
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-18 98.2 64 76.6
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-17 94.7 93 55.9
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.3e-16 90.1 91 44.0
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 4.5e-15 87.0 195 32.8
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-14 84.3 125 44.0
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-14 83.6 88 54.5
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-13 81.6 90 48.9
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-13 80.5 89 47.2
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-11 75.9 86 51.2
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 1.5e-10 72.0 88 40.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 1.8e-08 65.1 54 55.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 5.3e-08 63.5 40 75.0
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 2.9e-06 57.8 129 37.2


User provided reference genes

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