Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g005530.3 Solanum lycopersicum HOM05D007392 ORTHO05D009181 1.5e-68 262.7 126 100.0
Sopen01g001550 Solanum pennellii HOM05D007392 ORTHO05D009181 1.2e-67 259.6 126 98.4
PGSC0003DMG402032165 Solanum tuberosum HOM05D007392 ORTHO05D009181 2.9e-61 238.4 126 94.4
CAN.G1834.12 Capsicum annuum HOM05D007392 ORTHO05D009181 7.8e-54 213.8 126 82.5
Peaxi162Scf00705g00062 Petunia axillaris HOM05D007392 ORTHO05D009181 2.3e-37 159.1 135 69.6
Dinv13477 Davidia involucrata HOM05D007392 ORTHO05D009181 3.3e-36 155.2 145 60.7
Cc01_g00150 Coffea canephora HOM05D007392 ORTHO05D009181 9.9e-33 143.7 145 53.8
Nitab4.5_0006195g0060 Nicotiana tabacum HOM05D007392 ORTHO05D009181 9.9e-33 143.7 118 69.5
Nitab4.5_0000551g0100 Nicotiana tabacum HOM05D007392 ORTHO05D009181 3.2e-31 138.7 116 69.0
SalBow3G3897 Salvia bowleyana HOM05D007392 ORTHO05D009181 1.7e-29 132.9 138 53.6
GSVIVG01025476001 Vitis vinifera HOM05D007392 ORTHO05D009181 3.9e-29 131.7 138 57.2
Actinidia16241 Actinidia chinensis HOM05D007392 ORTHO05D009181 2.8e-27 125.6 139 51.8
Actinidia00905 Actinidia chinensis HOM05D007392 ORTHO05D009181 3.6e-27 125.2 143 48.3
Lsat_1_v5_gn_6_55560 Lactuca sativa HOM05D007392 ORTHO05D009181 6.2e-27 124.4 145 49.7
SGA_v2.0_scaffold6G03356 Striga asiatica HOM05D007392 ORTHO05D009181 1.1e-26 123.6 147 52.4
Migut.D02571 Erythranthe guttata HOM05D007392 ORTHO05D009181 4.0e-26 121.7 128 57.0
Migut.D02593 Erythranthe guttata HOM05D007392 ORTHO05D009181 5.8e-25 117.9 130 53.1
FvH4_3g45780 Fragaria vesca HOM05D007392 ORTHO05D009181 7.6e-25 117.5 145 49.0
Potri.001G003300 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.9e-24 115.5 143 48.3
FAN11G3804 Fragaria x ananassa HOM05D007392 ORTHO05D009181 3.8e-24 115.2 145 48.3
MD03G1003200 Malus domestica HOM05D007392 ORTHO05D009181 3.8e-24 115.2 150 44.7
Oeu004754.1 Olea europaea HOM05D007392 ORTHO05D009181 4.9e-24 114.8 117 58.1
ECA233G2404 Erigeron canadensis HOM05D007392 ORTHO05D009181 6.4e-24 114.4 145 47.6
RcHm_v2.0_Chr5g0083851 Rosa chinensis HOM05D007392 ORTHO05D009181 4.2e-23 111.7 144 50.0
FAN16G0802 Fragaria x ananassa HOM05D007392 ORTHO05D009181 7.1e-23 110.9 145 46.2
Cfa009557 Carpinus fangiana HOM05D007392 ORTHO05D009181 2.1e-22 109.4 139 52.5
CiPaw.13G177600 Carya illinoinensis HOM05D007392 ORTHO05D009181 4.6e-22 108.2 139 50.4
Rhsim13G0233100 Rhododendron simsii HOM05D007392 ORTHO05D009181 4.6e-22 108.2 122 52.5
TWI34G1824 Tripterygium wilfordii HOM05D007392 ORTHO05D009181 4.6e-22 108.2 144 47.9
Manes.15G109800 Manihot esculenta HOM05D007392 ORTHO05D009181 6.0e-22 107.8 153 45.1
Oeu059652.1 Olea europaea HOM05D007392 ORTHO05D009181 1.3e-21 106.7 115 53.9
Potri.003G221800 Populus trichocarpa HOM05D007392 ORTHO05D009181 2.3e-21 105.9 144 47.2
SGA_v2.0_scaffold6G03313 Striga asiatica HOM05D007392 ORTHO05D009181 5.1e-21 104.8 136 48.5
PSO339G3225 Papaver somniferum HOM05D007392 ORTHO05D009181 6.6e-21 104.4 139 46.0
DCAR_032194 Daucus carota HOM05D007392 ORTHO05D009181 1.1e-20 103.6 129 49.6
PSO384G3152 Papaver somniferum HOM05D007392 ORTHO05D009181 1.5e-20 103.2 138 45.7
Ciclev10017000m.g Citrus clementina HOM05D007392 ORTHO05D009181 4.3e-20 101.7 157 43.9
MSTRG.20935 Avicennia marina HOM05D000287 ORTHO05D000319 7.3e-20 100.9 122 52.5
Eucgr.J01763 Eucalyptus grandis HOM05D007392 ORTHO05D009181 1.6e-19 99.8 138 47.1
Sc09g0000040 Simmondsia chinensis HOM05D007392 ORTHO05D009181 1.6e-19 99.8 162 39.5
Nn2g15869 Nelumbo nucifera HOM05D007392 ORTHO05D009181 4.8e-19 98.2 141 46.8
TAR623G1707 Trochodendron aralioides HOM05D007392 ORTHO05D009181 4.8e-19 98.2 136 49.3
Aqoxy2G00525 Aquilegia oxysepala HOM05D007392 ORTHO05D009181 4.0e-18 95.1 133 47.4
FAN25G2102 Fragaria x ananassa HOM05D007392 ORTHO05D009181 1.2e-17 93.6 124 45.2
Migut.N00543 Erythranthe guttata HOM05D007392 ORTHO05D009181 2.0e-17 92.8 120 48.3
Prupe.6G002800 Prunus persica HOM05D007392 ORTHO05D009181 4.4e-17 91.7 135 48.9
CANSAT11G0973 Cannabis sativa HOM05D007392 ORTHO05D009181 9.9e-17 90.5 140 45.0
MD11G1003000 Malus domestica HOM05D007392 ORTHO05D009181 1.3e-16 90.1 148 39.9
EL10Ac4g10390 Beta vulgaris HOM05D007392 ORTHO05D009181 2.2e-16 89.4 137 39.4
QL01p003594 Quercus lobata HOM05D007392 ORTHO05D009181 2.2e-16 89.4 165 40.6
vmacro04261 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 8.4e-16 87.4 104 48.1
Sabra03G0165000 Salix brachista HOM05D007392 ORTHO05D009181 1.9e-15 86.3 122 47.5
Thhalv10021633m.g Eutrema salsugineum HOM05D007392 ORTHO05D009181 9.3e-15 84.0 170 37.6
C01p51590 Brassica napus HOM05D007392 ORTHO05D009181 1.6e-14 83.2 155 39.4
Nn7g35849 Nelumbo nucifera HOM05D007392 ORTHO05D009181 1.6e-14 83.2 117 45.3
Sed0020032 Sechium edule HOM05D007392 ORTHO05D009181 3.5e-14 82.0 138 39.1
THA.LOC104810320 Tarenaya hassleriana HOM05D007392 ORTHO05D009181 3.5e-14 82.0 152 39.5
BolC1t05102H Brassica oleracea HOM05D007392 ORTHO05D009181 4.6e-14 81.6 155 39.4
AT3G13480 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 6.0e-14 81.3 168 39.3
A01p40100 Brassica napus HOM05D007392 ORTHO05D009181 6.0e-14 81.3 160 38.1
BraA01t04052Z Brassica rapa HOM05D007392 ORTHO05D009181 6.0e-14 81.3 160 38.1
Sabra01G0002400 Salix brachista HOM05D007392 ORTHO05D009181 7.9e-14 80.9 128 42.2
BcaB04g18766 Brassica carinata HOM05D007392 ORTHO05D009181 1.0e-13 80.5 155 39.4
CsaV3_1G041630 Cucumis sativus L. HOM05D007392 ORTHO05D009181 1.3e-13 80.1 141 39.0
Carub.0003s1294 Capsella rubella HOM05D007392 ORTHO05D009181 1.7e-13 79.7 162 38.9
BraA03t12977Z Brassica rapa HOM05D007392 ORTHO05D009181 2.3e-13 79.3 168 35.7
CARHR088140 Cardamine hirsuta HOM05D007392 ORTHO05D009181 2.3e-13 79.3 164 37.8
Sp3g11690 Schrenkiella parvula HOM05D007392 ORTHO05D009181 1.1e-12 77.0 174 37.4
vmacro23199 Vaccinium macrocarpon HOM05D007392 ORTHO05D009181 1.1e-12 77.0 101 45.5
AL3G25390 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 1.5e-12 76.6 166 38.6
MELO3C015574.2 Cucumis melo HOM05D007392 ORTHO05D009181 1.5e-12 76.6 141 38.3
PGR119G0135 Punica granatum HOM05D007392 ORTHO05D009181 2.5e-12 75.9 143 38.5
BcaC05g29176 Brassica carinata HOM05D007392 ORTHO05D009181 3.3e-12 75.5 167 35.9
A05p36050 Brassica napus HOM05D007392 ORTHO05D009181 5.6e-12 74.7 163 36.2
ClCG03G014560 Citrullus lanatus HOM05D007392 ORTHO05D009181 2.8e-11 72.4 134 36.6
HPP92_015638 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.8e-11 72.4 129 38.8
HPP92_024836 Vanilla planifolia HOM05D007392 ORTHO05D009181 2.6e-09 65.9 135 37.8
Cpa.g.sc119.37 Carica papaya HOM05D007392 ORTHO05D009181 4.5e-09 65.1 41 80.5
BcaC01g03991 Brassica carinata HOM05D007392 ORTHO05D009181 5.8e-09 64.7 143 37.1
HPP92_026624 Vanilla planifolia HOM05D007392 ORTHO05D009181 5.8e-09 64.7 135 37.8
C03p46430 Brassica napus HOM05D007392 ORTHO05D009181 1.3e-08 63.5 111 41.4
Aa31LG8G680 Aethionema arabicum HOM05D007392 ORTHO05D009181 6.4e-08 61.2 134 33.6
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 2.4e-07 59.3 139 34.5
C03p46400 Brassica napus HOM05D007392 ORTHO05D009181 4.2e-07 58.5 143 36.4
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 4.2e-07 58.5 139 34.5
Aa31LG10G780 Aethionema arabicum HOM05D007392 ORTHO05D009181 7.1e-07 57.8 68 52.9
C05p54400 Brassica napus HOM05D007392 ORTHO05D009181 7.1e-07 57.8 145 33.8
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 9.3e-07 57.4 137 35.0
Carub.0001s4396 Capsella rubella HOM05D007392 ORTHO05D009181 1.2e-06 57.0 73 45.2
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 1.2e-06 57.0 141 32.6
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.6e-06 56.6 141 29.1
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 1.6e-06 56.6 141 34.8
AL1G63490 Arabidopsis lyrata HOM05D007392 ORTHO05D009181 2.7e-06 55.8 62 50.0
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 2.7e-06 55.8 141 29.1
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 3.5e-06 55.5 139 31.7
AT1G55475 Arabidopsis thaliana HOM05D007392 ORTHO05D009181 4.6e-06 55.1 62 51.6
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 4.6e-06 55.1 128 35.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 4.6e-06 55.1 138 31.9
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 4.6e-06 55.1 139 30.9
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 7.9e-06 54.3 139 33.1
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 7.9e-06 54.3 141 31.2
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 7.9e-06 54.3 139 30.9


User provided reference genes

Program Settings