Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 8.5e-252 873.2 457 100.0
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 7.5e-240 833.6 457 96.1
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 8.0e-234 813.5 457 93.9
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 1.5e-192 676.4 464 80.2
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 2.9e-191 672.2 464 79.5
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 1.9e-179 632.9 522 70.1
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 3.7e-178 628.6 452 76.1
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 7.9e-157 557.8 472 63.8
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 6.3e-154 548.1 477 63.5
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 1.6e-152 543.5 486 61.1
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.3e-151 540.4 486 62.6
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 3.2e-150 535.8 476 60.9
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.8e-148 530.0 476 60.5
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 7.5e-147 524.6 477 60.2
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 6.3e-146 521.5 502 57.8
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 6.3e-146 521.5 480 60.0
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 4.1e-145 518.8 475 60.8
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.1e-145 518.8 466 60.7
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 7.0e-145 518.1 475 61.1
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 2.7e-144 516.2 471 60.7
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 2.7e-144 516.2 484 61.2
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 4.5e-144 515.4 477 60.4
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 7.7e-144 514.6 481 59.7
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 7.7e-144 514.6 481 59.7
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 2.9e-143 512.7 503 59.4
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 6.5e-143 511.5 460 61.1
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.5e-143 511.5 477 60.8
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 4.2e-142 508.8 465 61.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 4.7e-141 505.4 471 59.4
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 6.8e-140 501.5 481 59.3
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 6.8e-140 501.5 476 57.6
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 8.8e-140 501.1 488 57.2
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.2e-139 500.7 469 58.0
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 4.4e-139 498.8 486 58.0
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 4.4e-139 498.8 470 58.9
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 5.7e-139 498.4 465 59.8
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 7.5e-139 498.0 472 58.7
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 2.2e-138 496.5 485 55.9
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 2.8e-138 496.1 473 59.8
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 3.7e-138 495.7 470 57.9
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 3.7e-138 495.7 477 58.1
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 4.8e-138 495.4 490 56.7
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 8.3e-138 494.6 475 57.7
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 1.1e-137 494.2 479 58.5
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 5.4e-137 491.9 477 57.9
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 5.4e-137 491.9 494 56.3
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 9.1e-137 491.1 474 58.2
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.6e-136 490.3 489 55.6
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 1.6e-136 490.3 501 56.5
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 3.5e-136 489.2 522 56.7
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 3.5e-136 489.2 485 58.6
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 4.5e-136 488.8 476 57.6
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.7e-135 486.9 476 57.8
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 2.9e-135 486.1 481 55.7
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.8e-135 485.7 465 58.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 5.0e-135 485.3 473 57.7
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 8.6e-135 484.6 470 57.7
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 8.6e-135 484.6 484 56.2
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 2.5e-134 483.0 468 57.5
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 2.5e-134 483.0 480 56.5
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 4.2e-134 482.3 475 56.4
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 9.5e-134 481.1 476 57.6
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 9.5e-134 481.1 485 56.7
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-133 480.7 462 58.0
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-133 480.7 470 57.2
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.2e-133 480.7 470 57.2
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 3.6e-133 479.2 460 57.2
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 8.8e-132 474.6 466 55.6
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.5e-131 473.8 471 56.3
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 2.6e-131 473.0 472 56.4
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.4e-131 472.6 474 57.4
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 2.8e-130 469.5 479 54.3
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 2.8e-130 469.5 492 55.1
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 4.9e-130 468.8 461 57.3
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.4e-129 466.5 468 55.3
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 4.1e-129 465.7 470 56.0
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 4.1e-129 465.7 476 56.1
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.0e-129 464.9 476 56.1
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 9.2e-129 464.5 462 56.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 1.2e-128 464.2 463 56.8
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.7e-128 463.0 470 55.3
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.5e-128 462.2 469 55.9
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.7e-127 460.3 471 55.2
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 8.6e-127 458.0 471 55.0
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 5.6e-126 455.3 483 54.2
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 5.6e-126 455.3 484 54.8
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.1e-125 453.4 469 55.0
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 8.0e-125 451.4 381 61.7
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 8.3e-122 441.4 465 55.5
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 3.2e-121 439.5 480 54.8
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.9e-118 430.3 488 52.0
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 5.6e-118 428.7 469 53.9
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.6e-117 426.0 474 52.7
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 9.8e-115 417.9 485 53.2
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.2e-112 411.0 462 51.5
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.2e-112 411.0 475 50.3
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 1.3e-111 407.5 395 57.0
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 3.9e-111 406.0 423 54.6
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.9e-102 377.1 427 52.0
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 9.5e-102 374.8 407 54.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.4e-100 370.9 405 53.6
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.2e-98 363.6 407 54.3
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 2.1e-93 347.1 408 48.8
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 2.1e-93 347.1 467 46.9
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.7e-90 337.4 482 44.8
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.7e-87 327.4 291 56.4
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 4.0e-84 316.2 462 45.2
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.8e-76 290.8 310 56.1
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 4.5e-75 286.2 196 75.0
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 3.8e-74 283.1 386 44.8
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 4.6e-72 276.2 302 55.3
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 4.3e-70 269.6 461 39.9
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.1e-65 255.0 229 59.4
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 8.7e-63 245.4 300 52.0
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 9.0e-60 235.3 237 54.4
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 5.9e-59 232.6 231 55.4
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 4.2e-57 226.5 228 55.3
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 1.1e-54 218.4 336 39.0
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 2.2e-45 187.6 377 32.9
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 2.0e-43 181.0 306 41.8
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 3.8e-42 176.8 224 50.0
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 6.1e-40 169.5 201 54.7
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 6.3e-37 159.5 300 38.7
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.0e-36 156.0 151 56.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 9.4e-25 119.0 109 58.7
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 2.3e-23 114.4 141 45.4
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 1.4e-20 105.1 94 55.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 2.4e-20 104.4 348 29.3
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 7.7e-19 99.4 179 39.1
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.2e-16 92.0 74 64.9
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 7.3e-09 66.2 127 33.9
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 1.6e-08 65.1 132 33.3
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.4e-07 62.0 135 33.3
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.4e-07 62.0 130 33.1
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 1.8e-07 61.6 121 33.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-07 61.6 125 30.4
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.8e-07 61.6 116 31.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 8.9e-07 59.3 135 32.6
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-06 58.9 129 29.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 2.0e-06 58.2 115 32.2
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.6e-06 57.8 142 31.7
COL.COLO4_15646 Corchorus olitorius HOM05D002747 ORTHO05D003069 3.4e-06 57.4 66 43.9
FAN07G2519 Fragaria x ananassa HOM05D002747 ORTHO05D003069 3.4e-06 57.4 137 29.2
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 4.4e-06 57.0 125 31.2
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 4.4e-06 57.0 101 31.7
Eucgr.H02771 Eucalyptus grandis HOM05D002747 ORTHO05D003069 5.8e-06 56.6 79 43.0
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 5.8e-06 56.6 135 31.9
GSVIVG01003278001 Vitis vinifera HOM05D002747 ORTHO05D003069 5.8e-06 56.6 48 47.9
Ciclev10021209m.g Citrus clementina HOM05D002747 ORTHO05D003069 7.5e-06 56.2 59 47.5
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 7.5e-06 56.2 161 25.5
FAN15G0280 Fragaria x ananassa HOM05D002747 ORTHO05D003069 7.5e-06 56.2 104 31.7
Peaxi162Scf00753g00333 Petunia axillaris HOM05D002747 ORTHO05D003069 7.5e-06 56.2 80 36.2
RcHm_v2.0_Chr6g0284441 Rosa chinensis HOM05D002747 ORTHO05D003069 7.5e-06 56.2 46 50.0
GSVIVG01020909001 Vitis vinifera HOM05D002747 ORTHO05D003069 7.5e-06 56.2 79 41.8
CANSAT01G0798 Cannabis sativa HOM05D002747 ORTHO05D003069 9.8e-06 55.8 53 47.2
CANSAT01G2415 Cannabis sativa HOM05D002747 ORTHO05D003069 9.8e-06 55.8 53 47.2
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 9.8e-06 55.8 133 30.1


User provided reference genes

Program Settings