Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 7.7e-86 320.5 165 100.0
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.8e-74 282.7 170 89.4
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 8.6e-69 263.8 186 78.5
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 8.6e-69 263.8 185 77.8
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.9e-68 262.7 192 75.5
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 4.3e-68 261.5 165 84.2
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 2.1e-67 259.2 185 76.8
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 6.1e-67 257.7 190 75.8
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.4e-66 256.5 182 77.5
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 5.2e-66 254.6 182 76.4
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.0e-65 252.7 185 74.1
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 9.8e-65 250.4 185 73.0
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 3.7e-64 248.4 190 72.6
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 3.7e-64 248.4 190 72.6
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 2.4e-63 245.7 189 74.6
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 7.0e-63 244.2 185 72.4
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 3.5e-62 241.9 195 68.2
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 3.5e-62 241.9 196 68.4
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 3.5e-62 241.9 195 68.2
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.3e-61 240.0 182 73.1
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 1.7e-61 239.6 197 69.0
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 1.7e-61 239.6 181 72.9
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 2.3e-61 239.2 192 69.3
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 1.9e-60 236.1 188 68.1
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 4.3e-60 235.0 194 69.1
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 7.3e-60 234.2 173 74.6
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-58 229.2 188 67.6
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-57 226.9 198 67.7
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 1.5e-52 209.9 186 64.0
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 1.5e-52 209.9 113 99.1
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-51 206.8 156 73.1
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-51 206.8 156 73.1
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-51 206.8 156 73.1
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-51 206.8 156 73.1
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 1.2e-51 206.8 156 73.1
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 8.9e-50 200.7 157 72.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 2.6e-49 199.1 113 92.9
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.6e-49 199.1 112 92.9
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 2.6e-49 199.1 112 92.9
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 9.8e-49 197.2 112 94.6
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 8.3e-48 194.1 112 90.2
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 8.3e-48 194.1 113 91.2
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.2e-46 190.3 166 67.5
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 5.1e-45 184.9 113 85.0
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 5.1e-45 184.9 103 95.1
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.6e-45 184.5 113 86.7
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 8.6e-45 184.1 114 86.8
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.9e-44 183.0 103 95.1
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-43 180.3 112 85.7
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-43 180.3 112 85.7
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 1.2e-43 180.3 112 85.7
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 2.1e-43 179.5 120 82.5
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 2.8e-43 179.1 113 85.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 3.6e-43 178.7 113 85.0
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.7e-43 178.3 98 95.9
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 8.1e-43 177.6 103 90.3
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.3e-42 176.0 106 88.7
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.0e-42 175.3 117 82.1
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.4e-41 172.2 113 83.2
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 7.6e-41 171.0 113 82.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 1.7e-40 169.9 110 80.9
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 3.8e-40 168.7 101 88.1
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 2.1e-38 162.9 116 76.7
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 1.0e-37 160.6 95 86.3
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.7e-37 159.8 96 86.5
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 2.3e-37 159.5 101 83.2
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 1.1e-36 157.1 102 82.4
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 1.1e-36 157.1 124 67.7
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 1.9e-36 156.4 135 65.9
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 2.5e-36 156.0 118 72.9
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 2.5e-36 156.0 118 72.9
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 2.5e-36 156.0 118 72.9
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 9.6e-36 154.1 91 85.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.6e-35 153.3 91 86.8
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.6e-33 146.0 153 58.8
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 9.9e-33 144.1 88 86.4
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-32 143.7 147 59.9
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.7e-32 143.3 141 58.2
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.4e-32 141.4 169 53.3
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.2e-31 138.7 120 67.5
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 5.4e-31 138.3 133 59.4
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 6.0e-30 134.8 81 88.9
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 6.0e-30 134.8 81 88.9
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 3.9e-29 132.1 110 67.3
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.5e-28 130.2 71 98.6
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 4.8e-27 125.2 80 80.0
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 5.3e-26 121.7 113 61.1
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 5.3e-26 121.7 113 61.1
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 9.0e-26 120.9 72 87.5
Gohir.D10G206350 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.5e-25 118.6 115 59.1
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.6e-25 117.9 72 88.9
Migut.D01410 Erythranthe guttata HOM05D005015 ORTHO05D005696 1.1e-23 114.0 145 49.0
Gorai.011G231900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.2e-23 112.1 99 65.7
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.4e-23 111.7 68 88.2
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 7.1e-23 111.3 77 79.2
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.1e-23 111.3 76 80.3
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.3e-23 110.9 66 86.4
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 4.6e-22 108.6 71 81.7
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.9e-21 105.5 76 73.7
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 3.9e-21 105.5 71 84.5
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.3e-20 102.4 89 67.4
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.3e-19 100.5 65 80.0
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.8e-19 98.6 68 77.9
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 6.2e-19 98.2 60 85.0
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.4e-18 97.1 60 81.7
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 4.0e-18 95.5 54 87.0
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.2e-17 94.0 89 64.0
HanXRQChr00c0746g0577131 Helianthus annuus HOM05D005015 ORTHO05D005696 2.0e-17 93.2 98 58.2
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 1.3e-16 90.5 74 64.9
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 1.7e-16 90.1 188 36.2
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 8.4e-16 87.8 69 69.6
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 5.5e-15 85.1 58 79.3
PSO548G0131 Papaver somniferum HOM05D005015 ORTHO05D005696 5.5e-15 85.1 46 87.0
Migut.D01335 Erythranthe guttata HOM05D005015 ORTHO05D005696 3.5e-14 82.4 46 82.6
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 1.8e-13 80.1 57 75.4
Gohir.A10G201450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.9e-13 79.0 46 82.6
Gohir.D01G157951 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.9e-13 79.0 46 80.4
Hma1.2p1_0414F.1_g147700 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 5.1e-13 78.6 46 78.3
BolSC29t60447H Brassica oleracea HOM05D005015 ORTHO05D005696 6.7e-13 78.2 93 45.2
SEGI_03619 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 1.5e-12 77.0 64 65.6
BraSC151t45691Z Brassica rapa HOM05D005015 ORTHO05D005696 1.9e-12 76.6 45 80.0
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.5e-12 76.3 49 81.6
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.3e-11 73.9 49 79.6
Lalb_Chr09g0335321 Lupinus albus HOM05D005015 ORTHO05D005696 4.8e-11 72.0 48 72.9
MD16G1272100 Malus domestica HOM05D005015 ORTHO05D005696 4.8e-11 72.0 45 77.8
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 2.4e-10 69.7 43 81.4
BolSC44t60844H Brassica oleracea HOM05D005015 ORTHO05D005696 5.3e-10 68.6 47 76.6
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 9.0e-10 67.8 37 89.2
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 9.0e-10 67.8 37 89.2
Nitab4.5_0003775g0050 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.2e-09 67.4 36 86.1
BraSC140t45611Z Brassica rapa HOM05D005015 ORTHO05D005696 2.6e-09 66.2 92 39.1
Lalb_Chr07g0191421 Lupinus albus HOM05D005015 ORTHO05D005696 1.0e-08 64.3 48 64.6
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 2.9e-08 62.8 83 49.4
CsaV3_UNG207830 Cucumis sativus L. HOM05D000216 ORTHO05D003638 3.8e-08 62.4 35 91.4
Lalb_Chr07g0192191 Lupinus albus HOM05D005015 ORTHO05D005696 7.1e-07 58.2 48 64.6
Lj2C1238T11 Lonicera japonica HOM05D000743 ORTHO05D000580 9.3e-07 57.8 36 77.8


User provided reference genes

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