Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 3.1e-153 545.0 266 100.0
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 3.1e-153 545.0 266 100.0
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 7.2e-150 533.9 266 98.9
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 3.3e-147 525.0 266 96.6
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 4.8e-146 521.2 266 96.2
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 1.4e-145 519.6 266 95.9
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 1.4e-145 519.6 266 95.5
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 5.3e-145 517.7 263 95.8
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 3.4e-144 515.0 266 95.1
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 7.7e-144 513.8 266 95.5
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.0e-143 513.5 266 94.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 1.3e-143 513.1 264 95.1
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 95.1
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 1.7e-143 512.7 266 94.4
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 2.9e-143 511.9 266 95.1
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 6.5e-143 510.8 264 94.7
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 1.4e-142 509.6 266 94.4
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 2.5e-142 508.8 266 94.4
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 2.5e-142 508.8 266 94.4
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 94.0
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 3.2e-142 508.4 266 94.0
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 9.4e-142 506.9 266 94.4
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.1e-141 505.8 266 94.4
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 3.0e-140 501.9 266 92.9
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 3.0e-140 501.9 266 92.9
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 1.1e-139 500.0 266 93.2
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 2.0e-139 499.2 263 93.2
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 4.1e-137 491.5 252 96.0
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-135 486.9 252 94.8
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 2.2e-135 485.7 252 94.8
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.9e-135 485.3 252 94.4
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 5.0e-135 484.6 252 94.4
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 5.0e-135 484.6 255 93.7
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.2e-133 479.9 243 96.3
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 1.2e-133 479.9 243 96.3
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 5.7e-131 471.1 264 89.4
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 6.3e-130 467.6 265 87.9
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 4.1e-129 464.9 265 89.1
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.6e-128 462.2 266 87.2
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 1.0e-127 460.3 240 93.8
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 2.2e-127 459.1 239 94.6
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 2.9e-127 458.8 240 93.3
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-126 456.1 263 85.2
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 1.6e-125 453.0 262 84.7
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 1.5e-123 446.4 253 88.5
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.4e-115 418.7 261 81.6
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.4e-113 413.3 257 82.9
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 3.2e-110 402.1 209 93.8
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.2e-109 400.2 209 93.3
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 1.2e-109 400.2 216 92.6
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 6.8e-108 394.4 211 93.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 6.8e-108 394.4 211 93.4
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 8.3e-106 387.5 252 79.4
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.3e-103 379.4 204 92.6
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 2.1e-101 372.9 206 91.3
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 4.0e-100 368.6 209 86.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 5.0e-95 351.7 187 94.7
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.6e-93 345.5 184 92.4
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 6.2e-85 318.2 161 96.3
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.3e-79 300.4 145 100.0
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 5.1e-79 298.5 148 97.3
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.4e-76 290.4 156 92.3
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 2.4e-76 289.7 150 95.3
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 5.8e-75 285.0 249 64.3
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.1e-73 280.8 159 88.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 1.4e-73 280.4 148 93.9
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-73 279.6 196 76.5
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 9.2e-73 277.7 145 92.4
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 3.4e-67 259.2 213 65.3
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 8.4e-66 254.6 279 48.4
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.4e-65 253.1 130 96.2
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.8e-61 239.6 160 77.5
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 3.4e-59 232.6 119 95.0
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 7.6e-59 231.5 122 93.4
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 4.2e-57 225.7 120 95.0
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 2.7e-56 223.0 108 100.0
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 7.9e-56 221.5 116 91.4
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 1.9e-49 200.3 117 88.9
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.4e-49 199.9 103 94.2
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 5.5e-49 198.7 106 93.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 6.0e-48 195.3 179 60.9
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 3.3e-46 189.5 105 89.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 8.2e-45 184.9 101 87.1
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 4.9e-42 175.6 85 96.5
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.5e-42 175.3 184 54.9
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-42 175.3 210 48.1
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 2.4e-36 156.8 81 91.4
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 2.0e-35 153.7 260 33.8
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.4e-35 152.9 108 74.1
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.5e-35 152.5 149 59.1
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 1.2e-32 144.4 101 73.3
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 1.6e-32 144.1 82 89.0
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 3.0e-31 139.8 83 85.5
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 5.7e-30 135.6 82 80.5
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 1.7e-29 134.0 153 52.3
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.2e-27 127.9 79 82.3
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 8.5e-26 121.7 63 88.9
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 2.7e-24 116.7 58 96.6
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 1.8e-23 114.0 154 46.8
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.1e-23 112.5 63 84.1
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 8.8e-23 111.7 68 79.4
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.7e-21 106.3 67 79.1
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 2.4e-20 103.6 57 87.7
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 1.5e-19 100.9 172 41.9
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.0e-18 95.9 65 76.9
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 1.9e-17 94.0 48 87.5
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-17 93.2 53 90.6
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 5.5e-17 92.4 56 83.9
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 5.2e-15 85.9 61 63.9
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 6.7e-15 85.5 40 90.0
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.7e-15 85.5 65 63.1
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 1.5e-14 84.3 53 86.8
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 2.0e-14 84.0 119 43.7
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 1.4e-12 77.8 59 72.9
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-10 70.5 84 46.4
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-09 67.0 31 90.3
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.7e-08 63.5 29 96.6
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.7e-08 63.5 70 44.3
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.0e-08 62.0 74 47.3
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-07 61.6 30 83.3
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 2.6e-06 57.0 32 78.1
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 7.5e-06 55.5 31 77.4


User provided reference genes

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