Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.7e-85 318.2 160 100.0
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.7e-85 318.2 160 100.0
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 4.1e-84 314.7 160 98.8
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 1.8e-79 299.3 155 96.1
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 9.8e-62 240.4 159 76.1
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 9.8e-62 240.4 159 74.8
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 4.9e-61 238.0 159 73.6
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 7.0e-60 234.2 159 74.2
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-58 229.6 159 73.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-57 226.9 158 70.9
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-55 219.9 150 72.0
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-55 218.8 159 70.4
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 5.2e-55 218.0 152 73.7
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-53 213.0 145 73.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.9e-52 209.5 159 63.5
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.9e-52 209.5 159 63.5
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 4.3e-49 198.4 131 72.5
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 2.1e-43 179.5 159 57.2
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 2.1e-43 179.5 159 57.2
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.7e-43 179.1 159 57.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 2.7e-43 179.1 159 57.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 2.7e-43 179.1 159 57.2
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 2.7e-43 179.1 159 56.6
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 5.1e-42 174.9 106 82.1
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.1e-40 169.5 150 57.3
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-40 168.3 119 70.6
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.0e-39 165.2 100 80.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 1.9e-33 146.4 168 48.8
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 3.3e-33 145.6 150 51.3
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.8e-32 141.7 157 49.7
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 8.1e-32 141.0 124 55.6
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.4e-31 139.4 161 48.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-31 138.7 179 46.9
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-31 137.9 99 67.7
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.2e-30 137.1 158 48.7
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-30 136.7 156 46.8
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 2.0e-30 136.3 156 46.8
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 2.0e-30 136.3 156 46.8
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.0e-30 136.3 156 46.8
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 4.5e-30 135.2 156 46.8
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 5.8e-30 134.8 147 51.0
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 9.9e-30 134.0 86 75.6
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-29 133.7 81 77.8
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 1.3e-29 133.7 81 77.8
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-29 133.3 72 86.1
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 4.9e-29 131.7 77 80.5
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 6.4e-29 131.3 159 45.3
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.9e-28 129.8 147 50.3
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 2.4e-28 129.4 74 79.7
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-27 126.7 77 76.6
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 7.9e-27 124.4 159 45.3
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 7.9e-27 124.4 159 45.3
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.1e-25 120.6 185 37.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-25 120.2 156 42.9
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 4.3e-25 118.6 159 44.0
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 2.1e-24 116.3 156 45.5
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.8e-24 115.9 159 42.8
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-23 112.5 75 72.0
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 4.0e-23 112.1 89 65.2
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.5e-22 110.2 127 48.8
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 9.9e-22 107.5 88 58.0
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 1.3e-21 107.1 114 49.1
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.8e-21 105.5 140 45.0
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 6.4e-21 104.8 132 47.0
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.5e-20 102.8 159 43.4
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.5e-20 102.8 159 43.4
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 3.2e-20 102.4 149 43.0
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 4.2e-20 102.1 113 49.6
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.5e-20 101.7 126 50.8
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 7.1e-20 101.3 131 45.8
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 9.3e-20 100.9 114 49.1
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-19 100.5 120 49.2
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.2e-19 100.5 159 38.4
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.2e-19 100.5 144 41.7
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.5e-19 99.0 151 39.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.5e-19 99.0 151 39.7
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 4.6e-19 98.6 105 53.3
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 6.0e-19 98.2 120 44.2
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.3e-16 90.5 154 42.2
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 2.8e-16 89.4 115 43.5
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.8e-16 88.6 75 58.7
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.4e-15 86.3 134 44.0
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.3e-15 85.1 153 36.6
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.5e-14 83.6 78 51.3
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.6e-14 82.8 128 37.5
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.4e-14 82.4 69 56.5
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 4.5e-14 82.0 61 72.1
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 2.9e-13 79.3 78 48.7
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.9e-13 78.6 145 36.6
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 8.4e-13 77.8 79 49.4
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.5e-12 76.3 58 62.1
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 4.2e-12 75.5 72 50.0
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.5e-12 75.1 69 50.7
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 7.1e-12 74.7 132 42.4
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 9.3e-12 74.3 128 37.5
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.3e-12 74.3 156 35.3
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.3e-12 74.3 156 35.3
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 9.3e-12 74.3 121 36.4
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 9.3e-12 74.3 121 36.4
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.1e-11 73.2 69 49.3
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 2.7e-11 72.8 76 43.4
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 2.7e-11 72.8 44 72.7
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 4.6e-11 72.0 125 36.8
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 7.9e-11 71.2 68 44.1
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.3e-10 70.5 66 51.5
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 2.2e-08 63.2 87 42.5
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.2e-08 63.2 109 39.4
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 3.7e-08 62.4 157 34.4
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.8e-08 62.0 39 61.5
Nitab4.5_0005831g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.8e-08 62.0 145 33.8
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 8.2e-08 61.2 59 44.1
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 2.4e-07 59.7 106 41.5
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 5.3e-07 58.5 68 39.7
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.9e-07 58.2 107 37.4
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 6.9e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 9.0e-07 57.8 92 43.5
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 9.0e-07 57.8 92 43.5
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 9.0e-07 57.8 92 43.5
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 9.0e-07 57.8 92 43.5
CAN.G70.3 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-06 57.4 35 80.0
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.2e-06 57.4 116 35.3
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 1.2e-06 57.4 74 36.5
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 2.6e-06 56.2 86 36.0
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.6e-06 56.2 49 49.0
Solyc09g056110.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.4e-06 55.8 45 66.7
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 5.9e-06 55.1 84 39.3
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 7.7e-06 54.7 56 44.6
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 7.7e-06 54.7 47 57.4
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 1.0e-05 54.3 63 42.9
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 1.0e-05 54.3 59 49.2


User provided reference genes

Program Settings