Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 0.0e+00 1249.2 609 100.0
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 0.0e+00 1249.2 609 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 0.0e+00 1125.2 590 94.7
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 0.0e+00 1083.6 612 88.4
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.3e-305 1051.6 570 92.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 5.0e-300 1033.9 573 90.4
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.5e-296 1022.3 570 89.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.5e-296 1022.3 570 89.6
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.8e-296 1020.4 568 90.3
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.1e-294 1016.1 571 89.7
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.4e-294 1015.8 569 90.2
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-294 1015.4 566 89.8
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.9e-294 1015.4 566 89.8
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 6.2e-290 1000.3 566 88.3
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 2.2e-287 991.9 568 87.1
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 3.2e-286 988.0 583 86.6
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-286 987.6 567 88.2
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-286 987.6 567 88.2
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-286 987.6 567 88.2
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 4.1e-286 987.6 567 88.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 8.6e-284 979.9 579 86.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.3e-283 977.6 546 89.7
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.1e-281 971.5 575 86.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.9e-281 969.9 570 86.7
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 4.4e-280 967.6 570 86.3
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 9.9e-280 966.5 570 86.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 6.6e-276 953.7 568 84.7
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.3e-275 951.4 543 87.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 2.6e-272 941.8 551 86.4
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 6.0e-269 930.6 550 85.6
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 1.0e-268 929.9 603 81.1
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 7.4e-259 897.1 546 83.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.3e-258 896.3 598 78.9
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-257 892.1 567 81.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 3.5e-253 878.2 573 80.1
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 2.9e-247 858.6 497 87.3
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 5.9e-240 834.3 532 80.6
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 5.7e-227 791.2 476 85.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.1e-214 750.4 386 96.9
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 5.5e-206 721.5 386 93.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.0e-196 690.6 480 76.5
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 1.4e-196 690.3 357 95.2
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.1e-193 678.7 469 77.6
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-187 660.6 552 65.8
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.3e-182 642.5 399 82.2
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 4.3e-182 642.1 373 86.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 4.3e-182 642.1 373 86.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 9.5e-182 641.0 315 98.7
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.1e-180 636.0 373 86.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.8e-180 634.8 373 86.1
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.4e-179 632.5 373 85.8
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 7.1e-177 624.8 318 95.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.8e-170 602.4 361 85.6
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-167 594.3 566 59.2
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 3.0e-167 592.8 293 99.7
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 9.9e-163 577.8 459 67.8
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 2.5e-158 563.1 390 77.4
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 2.8e-157 559.7 399 75.2
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 3.4e-155 552.7 544 57.5
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-154 550.8 372 78.8
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.2e-154 550.1 544 57.4
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 6.4e-146 521.9 257 99.2
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 8.4e-146 521.5 306 85.9
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.1e-145 518.5 300 87.7
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.7e-138 497.3 349 75.1
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.1e-135 485.7 302 80.5
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.8e-133 479.9 286 84.6
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.0e-131 473.8 271 87.1
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.2e-129 466.5 287 82.6
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.3e-122 444.5 243 90.5
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 2.9e-122 443.4 293 79.2
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 3.2e-121 439.9 391 62.7
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.7e-117 426.4 239 92.1
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-114 415.6 266 81.6
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.5e-114 415.6 266 81.6
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.9e-113 414.1 259 79.2
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-110 403.7 273 75.1
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 4.8e-109 399.4 198 97.0
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 8.2e-109 398.7 212 92.9
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 7.7e-107 392.1 194 97.4
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 7.7e-107 392.1 194 97.4
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 2.9e-106 390.2 194 96.9
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 3.0e-103 380.2 187 97.9
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.6e-102 377.1 187 97.3
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 5.7e-102 375.9 195 96.9
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 6.1e-96 355.9 859 36.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.4e-95 354.8 272 71.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 8.8e-95 352.1 172 97.1
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-92 345.1 176 93.8
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 4.5e-91 339.7 190 91.1
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 7.7e-91 339.0 235 74.0
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 1.9e-89 334.3 176 91.5
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 7.2e-89 332.4 181 93.9
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.8e-88 330.5 175 90.3
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 3.4e-86 323.6 264 65.2
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.4e-84 317.4 238 69.7
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 7.0e-84 315.8 263 64.6
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 6.6e-82 309.3 264 62.5
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-80 305.1 144 97.9
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 8.9e-79 298.9 163 90.2
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 9.8e-78 295.4 355 49.3
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 2.9e-77 293.9 212 75.5
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-75 288.5 192 76.0
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-75 288.5 192 76.0
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-73 282.0 172 81.4
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-73 282.0 172 81.4
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.3e-73 280.4 222 68.9
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.1e-72 277.7 171 84.8
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.3e-71 274.2 279 59.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.8e-70 269.6 143 91.6
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 3.6e-64 250.4 136 93.4
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.1e-64 249.2 128 95.3
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.4e-63 248.4 126 96.8
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 6.0e-59 233.0 159 78.0
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 5.1e-58 229.9 122 95.9
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-57 228.0 120 94.2
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-55 222.2 118 86.4
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.1e-55 220.7 114 98.2
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 5.2e-55 219.9 112 93.8
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 5.8e-54 216.5 130 83.8
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 4.9e-53 213.4 129 86.0
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 3.5e-51 207.2 105 90.5
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 3.5e-51 207.2 105 90.5
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 7.8e-51 206.1 116 90.5
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.5e-49 201.8 122 85.2
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 2.1e-48 198.0 118 79.7
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.8e-48 197.6 123 82.9
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 2.8e-48 197.6 110 92.7
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.6e-48 197.2 331 44.4
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 1.1e-47 195.7 118 83.9
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.6e-46 189.5 161 64.6
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-43 179.9 94 96.8
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 3.9e-42 177.2 98 86.7
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.3e-41 172.9 91 94.5
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 3.4e-38 164.1 91 90.1
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 7.9e-35 152.9 75 97.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 2.8e-32 144.4 137 59.1
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 9.0e-31 139.4 90 78.9
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 9.0e-31 139.4 77 83.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 5.8e-30 136.7 65 98.5
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 2.9e-29 134.4 245 38.4
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.9e-28 131.7 66 95.5
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 7.1e-28 129.8 99 67.7
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 5.1e-26 123.6 103 65.0
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.3e-25 120.6 62 93.5
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 3.7e-24 117.5 199 39.2
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-23 115.9 74 81.1
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 5.3e-23 113.6 144 47.9
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 1.9e-20 105.1 71 70.4
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.9e-20 105.1 64 73.4
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 7.1e-20 103.2 70 70.0
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 1.0e-18 99.4 97 56.7
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 5.1e-18 97.1 49 93.9
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.4e-17 93.2 115 49.6
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 9.7e-17 92.8 51 72.5
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 4.1e-15 87.4 84 53.6
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-15 86.7 146 40.4
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 9.0e-15 86.3 48 83.3
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 7.6e-14 83.2 58 79.3
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 3.8e-13 80.9 48 91.7
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 5.0e-13 80.5 67 61.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 8.5e-13 79.7 49 79.6
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-12 77.0 58 75.9
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 5.5e-12 77.0 65 66.2
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 9.3e-12 76.3 52 75.0
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-11 75.5 63 60.3
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 1.4e-10 72.4 54 70.4
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 3.9e-10 70.9 68 52.9
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-09 68.9 194 30.9
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.5e-09 68.2 45 77.8
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 4.3e-09 67.4 53 64.2
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 5.7e-09 67.0 29 96.6
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 1.3e-08 65.9 34 85.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 1.7e-08 65.5 47 72.3
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 2.8e-08 64.7 37 89.2
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.1e-07 62.8 83 42.2
BolSC28t60417H Brassica oleracea HOM05D000216 ORTHO05D001131 4.1e-07 60.8 33 81.8
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 4.1e-07 60.8 28 96.4
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.9e-06 57.0 27 96.3


User provided reference genes

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