Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 6.9e-262 906.7 452 100.0
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 6.9e-262 906.7 452 100.0
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 6.9e-262 906.7 452 100.0
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 6.9e-262 906.7 452 100.0
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 6.9e-262 906.7 452 100.0
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 2.2e-252 875.2 510 88.0
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.8e-233 812.4 510 83.1
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 1.7e-191 672.9 513 71.0
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.5e-179 633.3 510 68.0
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 7.6e-176 620.9 513 67.1
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 1.3e-172 610.1 507 65.3
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.7e-172 609.8 500 67.2
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.1e-172 608.2 500 67.0
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.3e-171 605.5 507 64.5
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 8.1e-170 600.9 509 64.6
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-168 594.3 496 65.3
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 7.6e-168 594.3 496 65.3
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.6e-168 594.3 514 64.4
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-164 583.9 514 64.0
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.9e-163 579.7 507 61.3
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 1.6e-162 576.6 514 61.5
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 3.4e-160 568.9 511 61.6
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 5.8e-160 568.2 505 63.0
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.6e-160 567.8 514 62.8
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 3.9e-156 555.4 512 61.1
Medtr7g021760 Medicago truncatula HOM05D004473 ORTHO05D005652 1.8e-153 546.6 494 61.5
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 3.1e-153 545.8 497 61.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 4.0e-153 545.4 511 59.7
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-152 543.5 514 60.7
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 9.9e-152 540.8 514 60.3
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.1e-150 537.3 512 59.8
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 1.1e-147 527.3 447 64.0
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 2.4e-145 519.6 510 58.2
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 2.6e-144 516.2 475 63.4
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 4.5e-144 515.4 457 61.7
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 5.8e-144 515.0 513 56.3
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 2.5e-142 509.6 513 55.8
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 4.2e-142 508.8 513 55.8
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 9.3e-142 507.7 513 55.8
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.6e-141 506.9 514 58.4
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 2.7e-141 506.1 510 56.9
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 1.3e-140 503.8 441 62.1
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 3.0e-140 502.7 511 56.8
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 2.4e-137 493.0 513 56.5
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 8.8e-132 474.6 517 56.5
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 5.7e-131 471.9 496 55.4
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 8.2e-130 468.0 427 60.2
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 1.9e-126 456.8 512 52.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.5e-126 456.4 408 62.7
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.6e-125 452.6 424 60.4
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 1.7e-122 443.7 473 54.8
LjContig00318g0021272 Lotus japonicus HOM05D004473 ORTHO05D005652 6.3e-122 441.8 486 53.5
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 7.0e-113 411.8 369 61.0
CAN.G386.22 Capsicum annuum HOM05D004473 ORTHO05D005652 3.8e-111 406.0 223 90.6
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 6.1e-109 398.7 338 64.2
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 8.8e-108 394.8 438 55.3
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.6e-104 384.0 362 63.8
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 8.5e-103 378.3 395 55.7
Peaxi162Scf00211g00244 Petunia axillaris HOM05D004473 ORTHO05D005652 7.5e-99 365.2 280 72.9
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.1e-97 361.3 498 46.8
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 9.5e-94 348.2 396 52.0
Hund11181 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.8e-92 344.0 452 48.9
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.7e-90 337.4 179 93.9
arahy.Tifrunner.gnm1.ann1.40BINF Arachis hypogaea HOM05D004473 ORTHO05D005652 5.9e-88 328.9 453 45.9
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 7.8e-88 328.6 400 51.5
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 1.0e-84 318.2 177 89.8
HanXRQChr00c0572g0575931 Helianthus annuus HOM05D004473 ORTHO05D005652 1.7e-82 310.8 307 57.3
CAN.G85.6 Capsicum annuum HOM05D004473 ORTHO05D005652 4.6e-80 302.8 159 95.0
CAN.G100.39 Capsicum annuum HOM05D004473 ORTHO05D005652 2.2e-74 283.9 159 89.9
Migut.D01408 Erythranthe guttata HOM05D004473 ORTHO05D005652 3.7e-74 283.1 250 61.6
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 3.7e-74 283.1 292 56.2
CAN.G1738.12 Capsicum annuum HOM05D004473 ORTHO05D005652 8.6e-71 271.9 145 93.1
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 4.7e-69 266.2 306 51.6
Nitab4.5_0007979g0030 Nicotiana tabacum HOM05D001387 ORTHO05D001250 2.7e-64 250.4 417 43.2
BcaB03g16404 Brassica carinata HOM05D004473 ORTHO05D005652 2.1e-61 240.7 228 59.6
Peaxi162Scf00211g00223 Petunia axillaris HOM05D004473 ORTHO05D005652 8.9e-60 235.3 122 95.9
Hund10683 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.2e-58 230.7 286 50.3
Psat0s1330g0240 Pisum sativum HOM05D004473 ORTHO05D005652 4.9e-58 229.6 211 60.7
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 8.4e-58 228.8 171 67.3
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 8.4e-58 228.8 171 67.3
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 8.4e-58 228.8 171 67.3
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 8.4e-58 228.8 171 67.3
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 8.4e-58 228.8 171 67.3
Solyc09g061390.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 4.2e-57 226.5 120 95.0
HanXRQChr00c0126g0571831 Helianthus annuus HOM05D004473 ORTHO05D005652 7.1e-57 225.7 143 75.5
arahy.Tifrunner.gnm1.ann1.3DS1LI Arachis hypogaea HOM05D004473 ORTHO05D005652 2.5e-54 217.2 257 51.4
arahy.Tifrunner.gnm1.ann1.SGP77C Arachis hypogaea HOM05D004473 ORTHO05D005652 2.5e-54 217.2 257 51.4
Hund10684 Selenicereus undatus HOM05D004473 ORTHO05D005652 3.3e-54 216.9 151 72.2
Nn4g24630 Nelumbo nucifera HOM05D004473 ORTHO05D005652 5.3e-52 209.5 149 71.8
Nitab4.5_0001439g0120 Nicotiana tabacum HOM05D004473 ORTHO05D005652 6.9e-52 209.1 113 92.9
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 2.9e-50 203.8 268 48.5
Oeu012780.1 Olea europaea HOM05D001387 ORTHO05D001250 1.4e-49 201.4 129 78.3
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.3e-47 194.9 219 53.4
CAN.G575.33 Capsicum annuum HOM05D004473 ORTHO05D000001 2.5e-46 190.7 126 77.0
HanXRQChr16g0503951 Helianthus annuus HOM05D004473 ORTHO05D005652 2.4e-41 174.1 164 59.1
BolSC49t61206H Brassica oleracea HOM05D004473 ORTHO05D005652 2.1e-40 171.0 120 71.7
Thhalv10028154m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 4.6e-40 169.9 120 69.2
Gorai.001G044100 Gossypium raimondii HOM05D004473 ORTHO05D005652 4.6e-40 169.9 139 66.2
Peaxi162Scf00219g00049 Petunia axillaris HOM05D004473 ORTHO05D005652 7.9e-40 169.1 98 85.7
MELO3C027413.2 Cucumis melo HOM05D004473 ORTHO05D005652 1.3e-39 168.3 143 64.3
Gohir.A08G070362 Gossypium hirsutum HOM05D004473 ORTHO05D005652 6.7e-39 166.0 137 67.9
HanXRQChr00c0524g0575451 Helianthus annuus HOM05D004473 ORTHO05D005652 6.7e-39 166.0 143 63.6
CAN.G219.14 Capsicum annuum HOM05D004473 ORTHO05D005652 1.5e-38 164.9 85 92.9
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 9.6e-38 162.2 122 68.0
Gorai.001G230600 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.5e-35 154.8 135 65.2
arahy.Tifrunner.gnm1.ann1.EJ7WQI Arachis hypogaea HOM05D004473 ORTHO05D005652 1.0e-34 152.1 134 62.7
HanXRQChr16g0503961 Helianthus annuus HOM05D004473 ORTHO05D005652 2.2e-34 151.0 126 66.7
BraSC59t46519Z Brassica rapa HOM05D004473 ORTHO05D005652 3.9e-31 140.2 142 57.7
HanXRQChr00c0165g0572181 Helianthus annuus HOM05D004473 ORTHO05D005652 6.7e-31 139.4 104 71.2
Thhalv10012215m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 9.6e-30 135.6 349 31.5
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 3.7e-29 133.7 287 35.5
Medtr7g117940 Medicago truncatula HOM05D004473 ORTHO05D005652 6.2e-29 132.9 106 65.1
Gorai.013G056700 Gossypium raimondii HOM05D004473 ORTHO05D005652 8.2e-29 132.5 122 60.7
Nn1g08463 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.4e-28 131.7 108 63.9
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 5.3e-28 129.8 87 71.3
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.5e-27 128.3 207 43.5
Gohir.A07G155811 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.5e-27 128.3 80 75.0
CAN.G130.4 Capsicum annuum HOM05D004473 ORTHO05D005652 2.6e-27 127.5 74 81.1
Hund04106 Selenicereus undatus HOM05D004473 ORTHO05D005652 5.8e-27 126.3 164 47.0
Nn020s41490 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.7e-26 124.8 86 75.6
Medtr7g098060 Medicago truncatula HOM05D004473 ORTHO05D005652 1.0e-23 115.5 100 58.0
HanXRQChr00c0165g0572171 Helianthus annuus HOM05D004473 ORTHO05D005652 6.9e-20 102.8 83 63.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.1e-17 95.5 86 55.8
Gorai.003G179600 Gossypium raimondii HOM05D004473 ORTHO05D005652 7.2e-17 92.8 65 67.7
Medtr2g089590 Medicago truncatula HOM05D004473 ORTHO05D005652 2.3e-15 87.8 82 62.2
Nn8g40470 Nelumbo nucifera HOM05D004473 ORTHO05D005652 6.7e-15 86.3 53 84.9
Oeu062869.1 Olea europaea HOM05D004473 ORTHO05D005652 1.1e-14 85.5 59 72.9
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 2.0e-14 84.7 59 69.5
Lalb_Chr13g0292931 Lupinus albus HOM05D004473 ORTHO05D005652 2.5e-14 84.3 84 53.6
MD15G1438900 Malus domestica HOM05D004473 ORTHO05D005652 1.7e-13 81.6 66 66.7
SMO086G0023 Selaginella moellendorffii HOM05D004473 ORTHO05D005652 2.2e-13 81.3 390 26.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 2.8e-13 80.9 60 66.7
Migut.D01003 Erythranthe guttata HOM05D004473 ORTHO05D005652 1.4e-12 78.6 67 64.2
GSVIVG01020677001 Vitis vinifera HOM05D004473 ORTHO05D005652 2.4e-12 77.8 46 71.7
Medtr2g089600 Medicago truncatula HOM05D004473 ORTHO05D005652 1.9e-09 68.2 59 57.6
Oeu020582.1 Olea europaea HOM05D004473 ORTHO05D005652 4.2e-09 67.0 38 78.9
MELO3C000879.2 Cucumis melo HOM05D004473 ORTHO05D005652 5.5e-09 66.6 58 60.3
MELO3C027497.2 Cucumis melo HOM05D004473 ORTHO05D005652 5.5e-09 66.6 58 60.3
Manes.10G075803 Manihot esculenta HOM05D004473 ORTHO05D005652 9.4e-09 65.9 60 61.7
TPR.G7920 Trifolium pratense HOM05D004473 ORTHO05D005652 9.4e-09 65.9 66 59.1
GSVIVG01022429001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.6e-08 65.1 43 67.4
AUR62037881 Chenopodium quinoa HOM05D001387 ORTHO05D001250 2.1e-08 64.7 42 69.0
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 3.6e-08 63.9 46 73.9
Oeu051131.1 Olea europaea HOM05D000388 ORTHO05D004227 3.6e-08 63.9 40 72.5
GSVIVG01001302001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.4e-07 62.0 52 65.4
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 3.9e-07 60.5 52 55.8
CSS0010292 Camellia sinensis var. sinensis HOM05D004473 ORTHO05D005652 5.1e-07 60.1 35 77.1
TPR.G40774 Trifolium pratense HOM05D004473 ORTHO05D005652 5.1e-07 60.1 42 78.6
Oeu022565.1 Olea europaea HOM05D004473 ORTHO05D005652 6.7e-07 59.7 36 77.8
BolSC29t60444H Brassica oleracea HOM05D004473 ORTHO05D005652 2.6e-06 57.8 52 55.8
TPR.G16230 Trifolium pratense HOM05D004473 ORTHO05D005652 4.4e-06 57.0 78 44.9
CsaV3_4G012020 Cucumis sativus L. HOM05D003614 ORTHO05D004156 7.4e-06 56.2 105 33.3
Mapoly1406s0001 Marchantia polymorpha HOM05D004473 ORTHO05D005652 9.7e-06 55.8 74 36.5


User provided reference genes

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