Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500194.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.8e-35 152.1 81 100.0
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 1.0e-14 83.2 41 100.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-14 81.6 41 97.6
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-14 81.6 41 97.6
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-14 81.6 41 97.6
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 3.0e-14 81.6 41 97.6
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 8.6e-14 80.1 41 95.1
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.5e-13 78.6 40 95.0
Nitab4.5_0001130g0160 Nicotiana tabacum HOM05D005034 ORTHO05D006234 3.3e-13 78.2 41 95.1
Solyc11g021210.2 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.3e-13 77.8 41 95.1
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 4.7e-12 74.3 50 80.0
Nitab4.5_0001446g0070 Nicotiana tabacum HOM05D005034 ORTHO05D006234 8.1e-12 73.6 41 90.2
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 1.1e-11 73.2 41 87.8
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.0e-11 71.2 50 68.0
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 4.0e-11 71.2 50 68.0
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 5.2e-11 70.9 40 85.0
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 6.8e-11 70.5 42 81.0
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 8.9e-11 70.1 40 85.0
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 8.9e-11 70.1 50 68.0
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 1.5e-10 69.3 40 85.0
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 1.5e-10 69.3 40 87.5
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 1.5e-10 69.3 40 87.5
RcHm_v2.0_CPg0502821 Rosa chinensis HOM05D005034 ORTHO05D006234 1.5e-10 69.3 44 75.0
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 3.4e-10 68.2 40 80.0
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 3.4e-10 68.2 40 80.0
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 5.8e-10 67.4 61 55.7
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-10 67.4 60 56.7
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-10 67.4 60 56.7
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 5.8e-10 67.4 60 56.7
Medtr4g050940 Medicago truncatula HOM05D001243 ORTHO05D000843 7.5e-10 67.0 58 58.6
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 7.5e-10 67.0 45 71.1
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 9.9e-10 66.6 40 80.0
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 9.9e-10 66.6 45 73.3
arahy.Tifrunner.gnm1.ann1.RW0ZF5 Arachis hypogaea HOM05D005034 ORTHO05D006234 2.2e-09 65.5 40 77.5
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 2.2e-09 65.5 40 77.5
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 2.9e-09 65.1 40 77.5
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 3.7e-09 64.7 40 77.5
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 3.7e-09 64.7 40 77.5
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.9e-09 64.3 60 53.3
Eucgr.K01772 Eucalyptus grandis HOM05D005034 ORTHO05D006234 6.4e-09 63.9 40 72.5
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.4e-09 63.9 60 55.0
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 6.4e-09 63.9 40 75.0
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 6.4e-09 63.9 40 75.0
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 8.3e-09 63.5 52 61.5
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 8.3e-09 63.5 45 68.9
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC143t45663Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 5.4e-08 60.8 45 66.7
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr01g0020091 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 51 62.7
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 5.4e-08 60.8 40 75.0
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 5.4e-08 60.8 41 75.6
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 9.2e-08 60.1 45 64.4
BolC9t56928H Brassica oleracea HOM05D005034 ORTHO05D006234 9.2e-08 60.1 45 66.7
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 9.2e-08 60.1 60 53.3
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.7e-07 58.5 59 52.5
Lalb_Chr18g0049451 Lupinus albus HOM05D005034 ORTHO05D006234 6.0e-07 57.4 40 67.5
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.0e-06 55.1 43 62.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.0e-06 55.1 43 62.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.0e-06 55.1 43 62.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.0e-06 55.1 43 62.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 3.0e-06 55.1 43 62.8
Peaxi162Scf01021g00118 Petunia axillaris HOM05D005034 ORTHO05D307017 3.9e-06 54.7 31 83.9
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 6.6e-06 53.9 40 67.5


User provided reference genes

Program Settings