Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500191.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 3.1e-254 881.3 452 100.0
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 9.3e-251 869.8 442 100.0
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 9.3e-251 869.8 442 100.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-143 512.7 254 100.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-143 512.7 254 100.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.9e-143 512.7 254 100.0
Nn304s46233 Nelumbo nucifera HOM05D001070 ORTHO05D002096 9.1e-121 438.0 446 54.9
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 5.5e-118 428.7 430 54.7
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 8.0e-117 424.9 459 55.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.9e-116 422.5 429 55.0
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 5.0e-111 405.6 454 52.6
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 1.7e-103 380.6 423 51.1
Migut.D01246 Erythranthe guttata HOM05D001070 ORTHO05D010233 8.8e-100 368.2 370 57.3
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 2.4e-97 360.1 447 48.1
Nitab4.5_0004137g0040 Nicotiana tabacum HOM05D001070 ORTHO05D010233 4.5e-96 355.9 370 58.4
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 8.0e-93 345.1 432 46.5
Lalb_Chr07g0191841 Lupinus albus HOM05D001070 ORTHO05D002096 1.8e-92 344.0 455 46.4
BraSC59t46556Z Brassica rapa HOM05D001070 ORTHO05D005132 1.2e-91 341.3 442 45.2
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 2.9e-87 326.6 398 48.0
HanXRQChr17g0569701 Helianthus annuus HOM05D001070 ORTHO05D005132 1.2e-85 321.2 467 43.0
HanXRQCPg0580321 Helianthus annuus HOM05D001070 ORTHO05D005132 1.2e-85 321.2 467 43.0
Solyc11g021300.2 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.4e-83 312.8 169 94.1
Peaxi162Scf01305g00039 Petunia axillaris HOM05D001070 ORTHO05D010233 8.3e-82 308.5 194 78.9
HanXRQChr15g0465401 Helianthus annuus HOM05D001070 ORTHO05D002096 4.1e-81 306.2 418 44.7
HanXRQChr02g0059751 Helianthus annuus HOM05D001070 ORTHO05D005132 3.3e-78 296.6 405 44.7
SalBow1G2240 Salvia bowleyana HOM05D001070 ORTHO05D005132 1.8e-76 290.8 302 54.0
Medtr4g006080 Medicago truncatula HOM05D001070 ORTHO05D002096 3.4e-75 286.6 486 40.5
Solyc02g011850.3 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.7e-72 276.9 277 56.3
Nitab4.5_0000172g2280 Nicotiana tabacum HOM05D001070 ORTHO05D010233 5.1e-71 272.7 201 72.1
HanXRQChr00c0703g0576891 Helianthus annuus HOM05D001070 ORTHO05D002096 3.9e-63 246.5 228 55.7
HanXRQChr08g0222861 Helianthus annuus HOM05D001070 ORTHO05D002096 3.9e-63 246.5 228 55.7
Solyc00g500125.1 Solanum lycopersicum HOM05D001070 ORTHO05D005132 8.1e-61 238.8 124 100.0
Solyc05g016220.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.4e-60 237.3 128 92.2
GSVIVG01029582001 Vitis vinifera HOM05D001070 ORTHO05D010233 3.4e-59 233.4 363 45.2
C09p25520 Brassica napus HOM05D001070 ORTHO05D010233 1.6e-56 224.6 336 41.7
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 2.3e-55 220.7 232 50.0
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 3.9e-55 219.9 179 60.3
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 3.9e-55 219.9 179 60.3
Duzib256G0005 Durio zibethinus HOM05D001070 ORTHO05D002096 5.1e-55 219.5 663 29.6
HanXRQChr17g0557721 Helianthus annuus HOM05D001070 ORTHO05D002096 7.3e-54 215.7 186 58.1
Solyc08g016000.2 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.3e-53 214.9 112 96.4
Nitab4.5_0004841g0070 Nicotiana tabacum HOM05D001070 ORTHO05D022991 5.3e-52 209.5 342 42.7
Lju5009P0T37 Lonicera japonica HOM05D001070 ORTHO05D002096 2.3e-47 194.1 286 43.0
Peaxi162Scf00080g00522 Petunia axillaris HOM05D001070 ORTHO05D022991 5.1e-47 193.0 217 56.7
C02p28780 Brassica napus HOM05D001070 ORTHO05D010233 4.3e-46 189.9 304 39.8
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.4e-41 174.9 143 57.3
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 7.1e-41 172.6 88 95.5
FAN09G0308 Fragaria x ananassa HOM05D001070 ORTHO05D010233 1.6e-40 171.4 296 39.2
Ciclev10014004m.g Citrus clementina HOM05D001070 ORTHO05D010233 4.6e-40 169.9 235 43.8
HanXRQChr15g0465501 Helianthus annuus HOM05D001070 ORTHO05D010233 5.6e-38 162.9 258 43.0
PSO210G2726 Papaver somniferum HOM05D001070 ORTHO05D010233 1.6e-37 161.4 257 42.8
PSO357G0427 Papaver somniferum HOM05D001070 ORTHO05D010233 1.6e-37 161.4 257 42.8
Peaxi162Scf00080g00515 Petunia axillaris HOM05D001070 ORTHO05D010233 2.6e-35 154.1 151 59.6
TAR365G0787 Trochodendron aralioides HOM05D001070 ORTHO05D002096 2.1e-32 144.4 109 63.3
HanXRQChr00c0336g0573721 Helianthus annuus HOM05D001070 ORTHO05D010233 1.3e-31 141.7 302 35.8
Hund27646 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.1e-31 139.8 140 50.0
Hund27834 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.1e-31 139.8 140 50.0
Hund29319 Selenicereus undatus HOM05D001070 ORTHO05D002096 5.1e-31 139.8 140 50.0
QL93p0141_0004 Quercus lobata HOM05D001070 ORTHO05D010233 8.7e-31 139.0 134 59.7
ClCG11G009260 Citrullus lanatus HOM05D001070 ORTHO05D010233 2.1e-29 134.4 204 45.1
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 2.4e-28 131.0 110 53.6
Gorai.006G095000 Gossypium raimondii HOM05D001070 ORTHO05D010233 6.9e-28 129.4 136 53.7
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 1.5e-27 128.3 71 85.9
HPP92_028416 Vanilla planifolia HOM05D041394 ORTHO05D002096 2.6e-27 127.5 286 32.9
TPR.G31143 Trifolium pratense HOM05D001070 ORTHO05D010233 3.4e-27 127.1 243 35.8
Solyc10g049470.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.5e-27 126.7 67 97.0
Lsat_1_v5_gn_0_20081 Lactuca sativa HOM05D001070 ORTHO05D010233 7.6e-27 125.9 307 33.9
Gorai.008G099100 Gossypium raimondii HOM05D001070 ORTHO05D010233 1.3e-26 125.2 153 51.0
Nitab4.5_0000729g0030 Nicotiana tabacum HOM05D001070 ORTHO05D010233 1.3e-26 125.2 89 70.8
Gorai.010G119900 Gossypium raimondii HOM05D001070 ORTHO05D010233 8.4e-26 122.5 115 60.0
Oeu012762.2 Olea europaea HOM05D001070 ORTHO05D002096 6.1e-24 116.3 96 62.5
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.3e-23 115.2 56 96.4
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.0e-23 114.0 89 68.5
HPP92_028431 Vanilla planifolia HOM05D001070 ORTHO05D002096 1.9e-22 111.3 119 45.4
SGA_v2.0_scaffold140G35506 Striga asiatica HOM05D001070 ORTHO05D002096 5.7e-22 109.8 155 45.2
Gohir.A05G323700 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.1e-20 105.5 106 50.9
Solyc00g500279.1 Solanum lycopersicum HOM05D001070 ORTHO05D022991 1.4e-20 105.1 124 55.6
Oeu012820.1 Olea europaea HOM05D000533 ORTHO05D002807 2.4e-20 104.4 136 47.1
Sed0027483 Sechium edule HOM05D001070 ORTHO05D010233 4.1e-20 103.6 108 55.6
Gohir.A04G053000 Gossypium hirsutum HOM05D001070 ORTHO05D002096 5.9e-19 99.8 93 54.8
HanXRQChr09g0258461 Helianthus annuus HOM05D001070 ORTHO05D010233 7.7e-19 99.4 206 35.9
Solyc04g045550.1 Solanum lycopersicum HOM05D001070 ORTHO05D022991 7.7e-19 99.4 60 85.0
Gohir.D12G091540 Gossypium hirsutum HOM05D001070 ORTHO05D010233 1.4e-17 95.1 114 51.8
SEGI_13637 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.9e-17 94.7 171 36.3
SEGI_26236 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.9e-17 94.7 171 36.3
SEGI_32990 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.9e-17 94.7 171 36.3
SEGI_38716 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.9e-17 94.7 171 36.3
SEGI_41548 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.9e-17 94.7 171 36.3
PGSC0003DMG400019919 Solanum tuberosum HOM05D001070 ORTHO05D022991 3.2e-17 94.0 53 88.7
SEGI_17643 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 9.4e-17 92.4 171 35.7
C07p33490 Brassica napus HOM05D001070 ORTHO05D002096 4.6e-16 90.1 90 50.0
HanXRQChr00c0379g0574341 Helianthus annuus HOM05D001070 ORTHO05D002096 1.4e-15 88.6 83 56.6
Eucgr.I00434 Eucalyptus grandis HOM05D001070 ORTHO05D010233 2.3e-15 87.8 131 45.0
TPR.G19445 Trifolium pratense HOM05D001070 ORTHO05D002096 2.3e-15 87.8 113 44.2
Solyc02g011845.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 8.8e-15 85.9 52 78.8
Solyc11g044690.1 Solanum lycopersicum HOM05D001070 ORTHO05D022991 1.1e-14 85.5 50 86.0
BraSC143t45654Z Brassica rapa HOM05D001070 ORTHO05D005132 4.3e-14 83.6 72 63.9
BraSC59t46531Z Brassica rapa HOM05D001070 ORTHO05D010233 4.3e-14 83.6 72 63.9
Nn029s41579 Nelumbo nucifera HOM05D001070 ORTHO05D010233 4.3e-14 83.6 113 51.3
SEGI_02123 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.7e-14 83.2 172 34.9
BolSC47t61061H Brassica oleracea HOM05D001070 ORTHO05D010233 1.3e-13 82.0 72 62.5
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 8.2e-13 79.3 54 66.7
Hund29519 Selenicereus undatus HOM05D001070 ORTHO05D002096 1.4e-12 78.6 75 52.0
HanXRQChr00c0336g0573731 Helianthus annuus HOM05D001070 ORTHO05D002096 3.1e-12 77.4 66 51.5
SEGI_13178 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 5.3e-12 76.6 143 37.1
Psat0s1160g0280 Pisum sativum HOM05D001070 ORTHO05D002096 6.9e-12 76.3 219 32.4
Psat0s2011g0040 Pisum sativum HOM05D000729 ORTHO05D001063 3.4e-11 73.9 64 51.6
CsaV3_1G025500 Cucumis sativus L. HOM05D001070 ORTHO05D010233 5.9e-11 73.2 99 47.5
Solyc03g058230.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 1.0e-10 72.4 46 76.1
EL10As15g24135 Beta vulgaris HOM05D001070 ORTHO05D002096 2.2e-10 71.2 55 61.8
Eucgr.L00730 Eucalyptus grandis HOM05D001070 ORTHO05D010233 8.5e-10 69.3 75 60.0
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 1.1e-09 68.9 121 38.0
Nitab4.5_0004137g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.4e-09 68.6 43 76.7
Gohir.D01G134260 Gossypium hirsutum HOM05D001070 ORTHO05D010233 1.9e-09 68.2 79 46.8
Nn6g34149 Nelumbo nucifera HOM05D001070 ORTHO05D010233 3.2e-09 67.4 66 54.5
AUR62015545 Chenopodium quinoa HOM05D000533 ORTHO05D001069 4.2e-09 67.0 124 38.7
Psat5g037720 Pisum sativum HOM05D001070 ORTHO05D010233 5.5e-09 66.6 192 31.2
Glyma.08G259600 Glycine max HOM05D001070 ORTHO05D002096 7.2e-09 66.2 68 50.0
arahy.Tifrunner.gnm1.ann1.9IC8RT Arachis hypogaea HOM05D000533 ORTHO05D002807 9.4e-09 65.9 62 53.2
Gorai.012G102000 Gossypium raimondii HOM05D001070 ORTHO05D010233 9.4e-09 65.9 58 62.1
SEGI_27064 Sequoiadendron giganteum HOM05D009451 ORTHO05D018118 1.2e-08 65.5 119 35.3
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 1.6e-08 65.1 55 58.2
LjContig00318g0026726 Lotus japonicus HOM05D000445 ORTHO05D000314 1.6e-08 65.1 95 44.2
Sc18g0005530 Simmondsia chinensis HOM05D001070 ORTHO05D010233 1.6e-08 65.1 60 63.3
Nn1g08628 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.7e-08 63.5 51 56.9
Sed0020476 Sechium edule HOM05D020378 ORTHO05D010652 1.0e-07 62.4 56 51.8
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 1.8e-07 61.6 44 63.6
Medtr5g039110 Medicago truncatula HOM05D001070 ORTHO05D002096 1.8e-07 61.6 55 56.4
MBI01_g06564_MAGBIO Magnolia biondii HOM05D001070 ORTHO05D002096 3.9e-07 60.5 57 50.9
Peaxi162Scf01305g00038 Petunia axillaris HOM05D001070 ORTHO05D005132 6.7e-07 59.7 102 47.1
SEGI_33411 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 8.8e-07 59.3 108 36.1
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.5e-06 58.5 64 56.2
Glyma.02G177300 Glycine max HOM05D001070 ORTHO05D010233 5.7e-06 56.6 71 39.4
AUR62014094 Chenopodium quinoa HOM05D000216 ORTHO05D000634 9.7e-06 55.8 62 50.0
Medtr7g021690 Medicago truncatula HOM05D001070 ORTHO05D005132 9.7e-06 55.8 147 35.4


User provided reference genes

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