Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.4e-172 608.2 303 100.0
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 3.4e-172 608.2 303 100.0
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.5e-82 309.7 182 86.3
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 1.5e-79 300.4 236 71.6
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 1.1e-74 284.3 218 72.5
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.1e-72 276.2 185 81.6
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 6.4e-70 268.5 159 87.4
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.7e-67 260.4 235 67.2
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.3e-67 260.0 132 100.0
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 2.3e-67 260.0 132 100.0
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 8.6e-67 258.1 132 99.2
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 7.3e-66 255.0 132 98.5
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 2.1e-65 253.4 132 97.0
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 1.8e-64 250.4 129 98.4
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 2.6e-63 246.5 132 95.5
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.3e-62 244.2 129 96.1
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-62 243.8 132 94.7
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 1.7e-62 243.8 132 94.7
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 1.7e-62 243.8 132 94.7
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.9e-62 243.0 132 93.9
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.9e-62 243.0 132 93.9
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 2.9e-62 243.0 132 93.9
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 6.4e-62 241.9 132 93.9
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 1.1e-61 241.1 132 93.9
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 1.1e-61 241.1 132 93.9
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 1.4e-61 240.7 129 95.3
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.4e-61 240.7 132 93.9
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.4e-61 240.7 132 93.9
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 1.4e-61 240.7 129 95.3
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 7.1e-61 238.4 132 92.4
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 3.5e-60 236.1 129 93.8
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 1.0e-59 234.6 127 94.5
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 1.0e-59 234.6 127 94.5
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 2.3e-59 233.4 129 93.0
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 1.1e-58 231.1 129 91.5
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 9.6e-58 228.0 132 90.2
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 6.2e-57 225.3 129 89.9
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 8.1e-57 224.9 131 89.3
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 3.4e-55 219.5 127 89.8
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 2.2e-54 216.9 132 84.1
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.3e-49 201.1 132 78.8
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.3e-49 201.1 132 78.8
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 1.5e-47 194.1 109 91.7
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.8e-47 192.2 132 77.3
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 1.7e-46 190.7 102 96.1
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 3.2e-45 186.4 114 83.3
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 2.1e-44 183.7 94 100.0
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 2.3e-43 180.3 103 90.3
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 2.5e-42 176.8 136 72.8
Nitab4.5_0006085g0060 Nicotiana tabacum HOM05D012137 ORTHO05D013232 3.8e-38 162.9 89 86.5
PGSC0003DMG400013760 Solanum tuberosum HOM05D012137 ORTHO05D013232 2.4e-37 160.2 76 96.1
Nitab4.5_0001152g0510 Nicotiana tabacum HOM05D012137 ORTHO05D013232 2.1e-36 157.1 81 90.1
Peaxi162Scf00122g01416 Petunia axillaris HOM05D012137 ORTHO05D013232 7.9e-36 155.2 71 98.6
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 1.8e-35 154.1 80 97.5
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 5.1e-35 152.5 81 92.6
Nitab4.5_0007309g0040 Nicotiana tabacum HOM05D012137 ORTHO05D013232 1.5e-34 151.0 78 91.0
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 2.1e-33 147.1 81 92.6
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 2.8e-33 146.7 86 88.4
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 2.4e-32 143.7 81 90.1
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 6.9e-32 142.1 92 82.6
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 7.6e-31 138.7 89 83.1
COL.COLO4_28184 Corchorus olitorius HOM05D012137 ORTHO05D013232 1.1e-29 134.8 75 86.7
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 1.0e-27 128.3 130 58.5
Nitab4.5_0000172g0140 Nicotiana tabacum HOM05D012137 ORTHO05D013232 1.0e-27 128.3 95 70.5
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 5.1e-27 125.9 92 80.4
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 5.7e-26 122.5 128 49.2
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 4.5e-23 112.8 64 89.1
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 1.7e-22 110.9 55 100.0
Nitab4.5_0000593g0220 Nicotiana tabacum HOM05D003666 ORTHO05D004770 5.0e-22 109.4 59 86.4
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 3.2e-21 106.7 105 59.0
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 1.1e-18 98.2 128 40.6
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 1.7e-17 94.4 133 48.1
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 2.4e-16 90.5 170 39.4
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 4.1e-16 89.7 71 73.2
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 9.1e-16 88.6 48 91.7
CDE02G4352 Ceratophyllum demersum HOM05D011521 ORTHO05D043913 1.5e-15 87.8 44 90.9
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 2.6e-15 87.0 55 85.5
Sopen02g001520 Solanum pennellii HOM05D000002 ORTHO05D000001 2.9e-14 83.6 43 88.4
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 6.5e-14 82.4 50 80.0
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 2.6e-10 70.5 100 39.0
Potri.007G061961 Populus trichocarpa HOM05D012137 ORTHO05D013232 1.8e-08 64.3 30 90.0
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 5.3e-08 62.8 139 32.4
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 5.3e-08 62.8 139 32.4
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 9.1e-08 62.0 137 31.4
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.2e-07 61.6 35 77.1
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.5e-07 61.2 137 31.4
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-07 60.8 137 30.7
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 2.0e-07 60.8 137 30.7
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.0e-07 60.8 140 30.7
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.0e-07 60.8 140 30.7
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 2.6e-07 60.5 137 30.7
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 2.6e-07 60.5 66 48.5
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.4e-07 60.1 137 29.2
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.4e-07 60.1 137 29.2
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 3.4e-07 60.1 137 29.2
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 7.7e-07 58.9 140 29.3
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 7.7e-07 58.9 140 29.3
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 1.0e-06 58.5 107 33.6
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.0e-06 58.5 143 32.2
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.0e-06 58.5 50 64.0
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 1.3e-06 58.2 54 57.4
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 2.2e-06 57.4 137 29.9
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 2.9e-06 57.0 137 29.9
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 3.8e-06 56.6 137 29.2
SHI15673 Sapria himalayana HOM05D003666 ORTHO05D004770 6.5e-06 55.8 96 40.6
Nitab4.5_0000299g0060 Nicotiana tabacum HOM05D010562 ORTHO05D016078 8.5e-06 55.5 37 83.8


User provided reference genes

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