Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 9.9e-104 380.2 199 100.0
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.2e-102 375.2 199 98.5
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.2e-102 375.2 199 98.5
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 4.0e-97 358.2 199 96.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 4.0e-97 358.2 199 96.0
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 6.0e-93 344.4 199 91.5
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 1.5e-91 339.7 189 93.1
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 1.8e-89 332.8 195 88.7
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 1.8e-89 332.8 195 88.7
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 5.8e-88 327.8 195 87.2
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 7.1e-86 320.9 188 88.3
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 7.1e-86 320.9 188 88.3
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.1e-85 319.3 199 85.4
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.0e-84 317.0 189 88.4
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 1.3e-84 316.6 189 88.4
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.3e-84 315.8 199 85.9
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.3e-84 315.8 199 85.9
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 1.5e-83 313.2 189 87.3
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.3e-83 312.0 193 85.5
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-83 312.0 189 87.3
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-83 312.0 189 87.3
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 3.3e-83 312.0 189 87.3
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 5.6e-83 311.2 189 87.3
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.4e-83 310.8 180 90.0
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 9.6e-83 310.5 199 84.4
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.3e-82 310.1 189 86.8
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 4.8e-82 308.1 189 86.8
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 2.4e-81 305.8 199 82.4
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 4.0e-81 305.1 195 84.1
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 5.3e-81 304.7 196 83.2
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 9.0e-81 303.9 189 86.8
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.5e-80 303.1 196 82.7
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-80 303.1 189 86.2
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 1.5e-80 303.1 189 86.2
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 7.6e-80 300.8 195 83.6
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 1.3e-79 300.1 189 85.7
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 1.4e-78 296.6 174 87.4
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.4e-78 296.6 174 87.4
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.1e-77 292.7 199 80.9
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 2.1e-77 292.7 199 80.9
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.1e-77 292.7 155 97.4
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 4.6e-77 291.6 195 81.0
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 1.8e-76 289.7 180 85.6
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 1.3e-74 283.5 171 86.5
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.3e-74 283.5 182 83.0
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.3e-74 283.5 150 96.7
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 8.2e-74 280.8 164 89.6
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.0e-71 273.9 158 90.5
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-71 273.9 150 93.3
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 8.7e-68 260.8 178 77.0
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.1e-67 260.4 150 92.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.5e-67 259.2 147 91.8
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.5e-67 259.2 147 91.8
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.3e-66 256.9 146 91.8
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 2.6e-64 249.2 144 92.4
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 3.4e-64 248.8 143 88.8
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.3e-63 246.9 153 83.7
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.2e-63 246.1 158 82.9
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.0e-63 245.0 133 94.7
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 5.5e-62 241.5 147 86.4
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.6e-61 240.0 185 73.0
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-61 240.0 185 73.0
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.6e-61 240.0 185 73.0
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.6e-61 238.4 187 73.3
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 8.8e-60 234.2 185 70.8
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 5.7e-59 231.5 135 88.1
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.5e-56 223.4 145 82.1
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.0e-55 220.7 150 79.3
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-55 220.3 132 86.4
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-55 220.3 132 86.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 6.5e-55 218.0 122 91.0
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 6.5e-55 218.0 122 91.0
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 1.1e-51 207.2 124 85.5
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 9.7e-51 204.1 119 86.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 2.8e-50 202.6 124 84.7
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.8e-50 202.6 148 73.0
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.8e-44 183.3 115 86.1
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 2.6e-43 179.5 122 76.2
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 1.6e-40 170.2 99 89.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.9e-38 163.3 89 92.1
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 1.9e-38 163.3 97 90.7
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 3.2e-38 162.5 99 82.8
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 8.8e-36 154.5 86 94.2
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-34 150.6 88 90.9
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.4e-33 147.1 79 93.7
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.2e-32 144.1 84 89.3
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 3.0e-28 129.4 75 92.0
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 2.7e-24 116.3 132 53.0
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 7.8e-24 114.8 74 81.1
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 7.8e-24 114.8 74 81.1
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.9e-23 112.8 81 74.1
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 3.3e-22 109.4 64 89.1
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.6e-22 108.6 67 88.1
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.6e-21 105.9 65 80.0
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.8e-20 103.6 60 88.3
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.8e-20 103.6 83 71.1
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 3.0e-20 102.8 97 66.0
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.2e-20 102.1 68 79.4
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 4.4e-19 99.0 73 69.9
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-19 99.0 76 68.4
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 6.4e-18 95.1 65 72.3
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-17 94.4 68 70.6
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.1e-14 84.3 47 87.2
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 4.7e-13 79.0 43 97.7
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.5e-11 71.6 45 77.8
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 7.0e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 2.7e-08 63.2 59 64.4
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 1.7e-07 60.5 38 86.8
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 4.3e-06 55.8 49 57.1


User provided reference genes

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