Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500061.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 1.3e-93 346.3 159 100.0
CAN.G219.25 Capsicum annuum HOM05D001033 ORTHO05D004888 1.4e-92 342.8 159 98.7
Peaxi162Scf00334g00124 Petunia axillaris HOM05D001033 ORTHO05D004888 6.9e-92 340.5 159 98.1
Migut.D01427 Erythranthe guttata HOM05D001033 ORTHO05D004888 1.3e-90 336.3 159 96.9
SalBow1G1376 Salvia bowleyana HOM05D001033 ORTHO05D004888 1.4e-89 332.8 159 95.6
Hma1.2p1_2223F.1_g317410 Hydrangea macrophylla HOM05D001033 ORTHO05D004888 1.9e-89 332.4 159 95.6
Nn021s41548 Nelumbo nucifera HOM05D001033 ORTHO05D004888 3.2e-89 331.6 159 94.3
unitig_91.g26504 Utricularia gibba HOM05D001033 ORTHO05D004888 1.2e-88 329.7 159 94.3
DCAR_032487 Daucus carota HOM05D001033 ORTHO05D004888 1.6e-88 329.3 159 93.7
CAN.G1183.6 Capsicum annuum HOM05D001033 ORTHO05D004888 2.1e-88 328.9 159 94.3
RcHm_v2.0_CPg0502181 Rosa chinensis HOM05D001033 ORTHO05D004888 4.7e-88 327.8 159 93.7
CAN.G170.11 Capsicum annuum HOM05D001033 ORTHO05D004888 6.1e-88 327.4 159 93.7
Gohir.1Z049399 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.9e-88 327.0 159 93.7
Gohir.A09G102100 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.9e-88 327.0 159 93.7
PSO548G0080 Papaver somniferum HOM05D001033 ORTHO05D004888 7.9e-88 327.0 159 93.1
Ah.10g027550 Amaranthus hybridus HOM05D001033 ORTHO05D004888 1.0e-87 326.6 159 93.7
COL.COLO4_03102 Corchorus olitorius HOM05D001033 ORTHO05D004888 1.0e-87 326.6 159 93.1
LjContig00318g0025596 Lotus japonicus HOM05D001033 ORTHO05D004888 1.8e-87 325.9 159 91.2
EL10As12g24022 Beta vulgaris HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.1
EL10As1g23049 Beta vulgaris HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.1
HanXRQChr00c0345g0573891 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr00c0702g0576871 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr02g0044951 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr07g0201011 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr08g0210301 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr10g0283491 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr10g0289211 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr10g0303781 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQChr11g0326761 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
HanXRQCPg0579971 Helianthus annuus HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.7
PGR111G0105 Punica granatum HOM05D001033 ORTHO05D004888 3.0e-87 325.1 159 93.1
Medtr4g035040 Medicago truncatula HOM05D001033 ORTHO05D004888 8.8e-87 323.6 159 91.2
Medtr7g021800 Medicago truncatula HOM05D001033 ORTHO05D004888 8.8e-87 323.6 159 91.2
Gohir.D03G073392 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-86 323.2 159 92.5
Lsat_1_v5_gn_3_99221 Lactuca sativa HOM05D001033 ORTHO05D004888 1.1e-86 323.2 157 94.3
Lsat_1_v5_gn_3_99300 Lactuca sativa HOM05D001033 ORTHO05D004888 1.1e-86 323.2 157 94.3
Lsat_1_v5_gn_4_40440 Lactuca sativa HOM05D001033 ORTHO05D004888 1.1e-86 323.2 157 94.3
Potri.013G163200 Populus trichocarpa HOM05D001033 ORTHO05D004888 1.5e-86 322.8 160 91.9
HanXRQChr10g0285321 Helianthus annuus HOM05D001033 ORTHO05D004888 2.6e-86 322.0 159 93.1
HanXRQChr02g0041501 Helianthus annuus HOM05D001033 ORTHO05D004888 3.3e-86 321.6 159 93.1
Lalb_Chr07g0192281 Lupinus albus HOM05D001033 ORTHO05D004888 5.7e-86 320.9 159 91.8
VMungo0498G0002 Vigna mungo HOM05D001033 ORTHO05D004888 5.7e-86 320.9 159 89.3
Lj4g0025955 Lotus japonicus HOM05D001033 ORTHO05D004888 7.4e-86 320.5 159 90.6
QL93p0270_0002 Quercus lobata HOM05D001033 ORTHO05D004888 7.4e-86 320.5 158 91.8
Lalb_Chr20g0115661 Lupinus albus HOM05D001033 ORTHO05D004888 1.3e-85 319.7 159 91.2
Phvul.011G056548 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 2.8e-85 318.5 159 88.7
ATCG00420 Arabidopsis thaliana HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BNapus_Darmor_BZH_scaffold_253p00160 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BNapus_Darmor_BZH_scaffold_287p00080 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
C02p43470 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
C09p40480 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BolSC45t60947H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BolSC46t61041H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BolSC47t61103H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BraSC25t45841Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BraSC25t45874Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BraSC58t46413Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
BraSC58t46484Z Brassica rapa HOM05D001033 ORTHO05D004888 2.0e-83 312.4 159 89.3
Sc19g0006000 Simmondsia chinensis HOM05D001033 ORTHO05D004888 3.5e-83 311.6 157 90.4
TWI36G0295 Tripterygium wilfordii HOM05D001033 ORTHO05D004888 1.0e-82 310.1 159 89.3
AL2G21460 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 2.2e-82 308.9 159 88.1
BolSC45t60865H Brassica oleracea HOM05D001033 ORTHO05D004888 2.2e-82 308.9 159 88.7
Eucgr.A02747 Eucalyptus grandis HOM05D001033 ORTHO05D004888 2.9e-82 308.5 158 88.0
CSS0012650 Camellia sinensis var. sinensis HOM05D001033 ORTHO05D004888 5.0e-82 307.8 159 91.2
BolSC29t60582H Brassica oleracea HOM05D001033 ORTHO05D004888 6.5e-82 307.4 159 88.1
CAN.G91.9 Capsicum annuum HOM05D001033 ORTHO05D004888 7.2e-81 303.9 159 88.1
HanXRQChr15g0480701 Helianthus annuus HOM05D001033 ORTHO05D004888 1.2e-80 303.1 151 91.4
CARHR282040 Cardamine hirsuta HOM05D001033 ORTHO05D004888 3.6e-80 301.6 154 89.0
A06p23250 Brassica napus HOM05D001033 ORTHO05D004888 6.1e-80 300.8 159 86.2
Medtr0002s0630 Medicago truncatula HOM05D001033 ORTHO05D004888 6.1e-80 300.8 158 85.4
Ah.09g227310 Amaranthus hybridus HOM05D001033 ORTHO05D004888 7.4e-78 293.9 142 94.4
Sed0001763 Sechium edule HOM05D001033 ORTHO05D004888 1.8e-76 289.3 144 89.6
Sed0011576 Sechium edule HOM05D001033 ORTHO05D004888 7.0e-76 287.3 144 90.3
Sed0015951 Sechium edule HOM05D000680 ORTHO05D000738 7.0e-76 287.3 144 90.3
Sed0016230 Sechium edule HOM05D001033 ORTHO05D004888 7.0e-76 287.3 144 90.3
Gorai.001G177200 Gossypium raimondii HOM05D001033 ORTHO05D004888 9.1e-76 287.0 143 92.3
Solyc00g500142.1 Solanum lycopersicum HOM05D001033 ORTHO05D004888 7.7e-75 283.9 134 97.8
SEGI_35798 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.5e-73 279.6 159 79.9
ATR0303G003 Amborella trichopoda HOM05D001033 ORTHO05D004888 5.5e-73 277.7 139 90.6
AL2G20710 Arabidopsis lyrata HOM05D001033 ORTHO05D004888 1.6e-72 276.2 159 81.1
Gohir.D01G102242 Gossypium hirsutum HOM05D001033 ORTHO05D004888 6.1e-72 274.2 159 81.8
BraA06t25427Z Brassica rapa HOM05D001033 ORTHO05D004888 8.8e-71 270.4 149 83.9
Gohir.D07G155032 Gossypium hirsutum HOM05D001033 ORTHO05D004888 4.4e-70 268.1 139 88.5
Sed0007524 Sechium edule HOM05D000680 ORTHO05D000738 9.1e-68 260.4 144 84.7
BolSC46t60994H Brassica oleracea HOM05D001033 ORTHO05D004888 3.8e-66 255.0 159 76.1
Thhalv10010993m.g Eutrema salsugineum HOM05D001033 ORTHO05D004888 6.5e-66 254.2 159 75.5
Nitab4.5_0001841g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 9.4e-65 250.4 132 87.1
Gohir.D07G099350 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.2e-64 250.0 134 86.6
Nn071s42392 Nelumbo nucifera HOM05D001033 ORTHO05D004888 2.1e-64 249.2 151 79.5
FAN19G1182 Fragaria x ananassa HOM05D001033 ORTHO05D004888 4.7e-64 248.1 159 75.5
BolC9t55818H Brassica oleracea HOM05D001033 ORTHO05D004888 1.0e-63 246.9 163 72.4
EL10As5g23626 Beta vulgaris HOM05D001033 ORTHO05D004888 3.1e-60 235.3 117 92.3
Nitab4.5_0001761g0190 Nicotiana tabacum HOM05D001033 ORTHO05D004888 3.8e-58 228.4 112 93.8
Lalb_Chr07g0192231 Lupinus albus HOM05D001033 ORTHO05D004888 1.1e-57 226.9 135 78.5
Gorai.005G187900 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.6e-56 223.0 139 74.1
EL10Ac9g20715 Beta vulgaris HOM05D001033 ORTHO05D004888 2.8e-56 222.2 136 78.7
SMO086G0027 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-53 213.4 159 64.8
SMO086G0049 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-53 213.4 159 64.8
SMO233G0001 Selaginella moellendorffii HOM05D001033 ORTHO05D004888 1.3e-53 213.4 159 64.8
Gorai.001G107100 Gossypium raimondii HOM05D001033 ORTHO05D004888 1.1e-52 210.3 134 76.9
Lj2C1237T30 Lonicera japonica HOM05D001033 ORTHO05D004888 1.8e-52 209.5 100 95.0
Lj2C1239T58 Lonicera japonica HOM05D001033 ORTHO05D004888 1.8e-52 209.5 100 95.0
Lj2C1239T8 Lonicera japonica HOM05D001033 ORTHO05D004888 1.8e-52 209.5 100 95.0
EL10As15g24143 Beta vulgaris HOM05D001033 ORTHO05D004888 4.1e-52 208.4 158 66.5
Duzib192G0593 Durio zibethinus HOM05D001033 ORTHO05D004888 1.6e-51 206.5 109 88.1
vmacro22414 Vaccinium macrocarpon HOM05D001033 ORTHO05D004888 1.6e-51 206.5 105 92.4
C02p28640 Brassica napus HOM05D001033 ORTHO05D004888 2.0e-51 206.1 107 86.9
BolC2t08910H Brassica oleracea HOM05D001033 ORTHO05D004888 2.0e-51 206.1 107 86.9
Gohir.A09G102850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.1e-49 200.3 101 90.1
MBI06_g39081_MAGBIO Magnolia biondii HOM05D001033 ORTHO05D004888 1.9e-49 199.5 102 87.3
Migut.D01354 Erythranthe guttata HOM05D001033 ORTHO05D004888 4.3e-49 198.4 97 94.8
Nitab4.5_0005412g0030 Nicotiana tabacum HOM05D001033 ORTHO05D004888 7.3e-49 197.6 111 82.0
SGA_v2.0_scaffold781G53594 Striga asiatica HOM05D001033 ORTHO05D004888 2.1e-48 196.1 162 65.4
PSO302G0237 Papaver somniferum HOM05D001033 ORTHO05D004888 8.0e-48 194.1 100 88.0
Prupe.1G270900 Prunus persica HOM05D001033 ORTHO05D004888 1.8e-47 193.0 95 92.6
Lsat_1_v5_gn_2_5601 Lactuca sativa HOM05D001033 ORTHO05D004888 5.2e-47 191.4 101 87.1
PGSC0003DMG400002651 Solanum tuberosum HOM05D001033 ORTHO05D004888 1.2e-46 190.3 92 96.7
BolC7t41665H Brassica oleracea HOM05D001033 ORTHO05D004888 2.9e-45 185.7 101 85.1
Gorai.009G225200 Gossypium raimondii HOM05D001033 ORTHO05D004888 4.9e-45 184.9 109 82.6
Nn1g03019 Nelumbo nucifera HOM05D001033 ORTHO05D004888 8.3e-45 184.1 150 69.3
SEGI_19633 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 5.4e-44 181.4 108 76.9
arahy.Tifrunner.gnm1.ann1.XVSZ20 Arachis hypogaea HOM05D001033 ORTHO05D004888 7.0e-44 181.0 115 73.0
CAN.G386.17 Capsicum annuum HOM05D000388 ORTHO05D004888 6.0e-43 177.9 83 98.8
Gohir.D05G218250 Gossypium hirsutum HOM05D001033 ORTHO05D004888 7.8e-43 177.6 109 78.0
Peaxi162Scf00110g00002 Petunia axillaris HOM05D001033 ORTHO05D004888 3.0e-42 175.6 83 97.6
Oeu062837.1 Olea europaea HOM05D001033 ORTHO05D004888 2.5e-41 172.6 100 83.0
arahy.Tifrunner.gnm1.ann1.GNV4IL Arachis hypogaea HOM05D001033 ORTHO05D004888 1.2e-40 170.2 90 83.3
arahy.Tifrunner.gnm1.ann1.WN69VX Arachis hypogaea HOM05D001033 ORTHO05D004888 1.6e-40 169.9 83 92.8
DCAR_022590 Daucus carota HOM05D013260 ORTHO05D004888 2.8e-40 169.1 84 91.7
BolSC29t60459H Brassica oleracea HOM05D001033 ORTHO05D004888 6.2e-40 167.9 89 86.5
PGSC0003DMG400019224 Solanum tuberosum HOM05D001033 ORTHO05D004888 6.8e-39 164.5 92 82.6
unitig_87.g27944 Utricularia gibba HOM05D000388 ORTHO05D004888 6.8e-39 164.5 98 77.6
Haze_27536 Corylus avellana HOM05D001033 ORTHO05D004888 2.6e-38 162.5 83 89.2
MELO3C029536.2 Cucumis melo HOM05D001033 ORTHO05D004888 2.9e-37 159.1 83 86.7
CAN.G100.48 Capsicum annuum HOM05D001033 ORTHO05D004888 3.7e-37 158.7 78 91.0
EL10Ac4g08633 Beta vulgaris HOM05D001033 ORTHO05D004888 2.4e-36 156.0 82 89.0
Nitab4.5_0011099g0060 Nicotiana tabacum HOM05D001033 ORTHO05D004888 2.7e-35 152.5 78 89.7
RcHm_v2.0_Chr7g0209391 Rosa chinensis HOM05D001033 ORTHO05D004888 6.6e-34 147.9 72 93.1
SEGI_38193 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 8.6e-34 147.5 84 81.0
SEGI_08348 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 1.1e-33 147.1 83 81.9
SEGI_20198 Sequoiadendron giganteum HOM05D001033 ORTHO05D004888 3.3e-33 145.6 83 80.7
Lalb_Chr03g0039371 Lupinus albus HOM05D001033 ORTHO05D004888 2.1e-32 142.9 68 97.1
HanXRQChr09g0274591 Helianthus annuus HOM05D001033 ORTHO05D004888 7.6e-30 134.4 65 93.8
Sed0002731 Sechium edule HOM05D001033 ORTHO05D004888 7.6e-30 134.4 124 58.1
Gohir.A10G200850 Gossypium hirsutum HOM05D001033 ORTHO05D004888 1.6e-27 126.7 59 93.2
Nn055s41942 Nelumbo nucifera HOM05D001033 ORTHO05D004888 6.0e-27 124.8 57 96.5
Solyc01g017420.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.9e-26 122.1 69 79.7
HanXRQChr17g0559251 Helianthus annuus HOM05D001033 ORTHO05D004888 2.5e-25 119.4 59 91.5
Solyc01g056470.1 Solanum lycopersicum HOM05D000890 ORTHO05D004888 3.3e-25 119.0 99 60.6
Lalb_Chr03g0030861 Lupinus albus HOM05D001033 ORTHO05D004888 1.5e-22 110.2 54 90.7
TAR633G0438 Trochodendron aralioides HOM05D001033 ORTHO05D004888 5.8e-22 108.2 58 82.8
ClCG07G012530 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.2e-21 106.3 55 85.5
BolSC35t60639H Brassica oleracea HOM05D001033 ORTHO05D004888 4.9e-21 105.1 53 86.8
TPR.G37622 Trifolium pratense HOM05D001033 ORTHO05D004888 3.2e-20 102.4 50 92.0
Lalb_Chr23g0274161 Lupinus albus HOM05D001033 ORTHO05D004888 2.1e-19 99.8 53 81.1
C09p29570 Brassica napus HOM05D001033 ORTHO05D004888 8.7e-18 94.4 43 93.0
Phvul.005G068600 Phaseolus vulgaris HOM05D001033 ORTHO05D004888 1.6e-16 90.1 82 51.2
EL10Ac5g11368 Beta vulgaris HOM05D001033 ORTHO05D004888 1.2e-14 84.0 48 81.2
ClCG00G002680 Citrullus lanatus HOM05D001033 ORTHO05D004888 2.9e-13 79.3 40 87.5
MELO3C034226.2 Cucumis melo HOM05D001033 ORTHO05D004888 1.6e-11 73.6 46 73.9
TAR338G0003 Trochodendron aralioides HOM05D001033 ORTHO05D004888 2.7e-11 72.8 39 84.6
Nitab4.5_0007578g0070 Nicotiana tabacum HOM05D012508 ORTHO05D011743 5.1e-10 68.6 60 63.3
Lalb_Chr03g0030871 Lupinus albus HOM05D001033 ORTHO05D004888 2.5e-09 66.2 68 50.0
AUR62014217 Chenopodium quinoa HOM05D001033 ORTHO05D002045 3.6e-08 62.4 46 63.0
Haze_26224 Corylus avellana HOM05D001560 ORTHO05D004675 3.4e-06 55.8 70 34.3
BolSC47t61120H Brassica oleracea HOM05D001033 ORTHO05D004888 4.5e-06 55.5 24 95.8
Cre07.g327400 Chlamydomonas reinhardtii HOM05D001560 ORTHO05D004675 9.9e-06 54.3 59 35.6


User provided reference genes

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