Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 1.3e-100 369.8 189 100.0
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.6e-73 277.3 146 100.0
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-72 276.9 145 100.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-69 266.2 139 100.0
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.0e-69 266.2 139 100.0
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-69 266.2 139 100.0
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.0e-69 266.2 139 100.0
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 2.0e-69 266.2 139 100.0
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 4.9e-68 261.5 145 96.6
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 2.3e-62 242.7 139 92.1
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.2e-59 232.3 139 87.8
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.6e-58 229.9 132 93.2
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.7e-57 226.5 134 91.0
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.1e-50 203.0 139 79.1
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.9e-49 198.7 116 92.2
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.5e-48 194.1 102 100.0
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 1.3e-44 183.7 98 99.0
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 1.3e-44 183.7 98 99.0
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 6.4e-44 181.4 97 99.0
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 1.2e-42 177.2 105 90.5
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 3.9e-41 172.2 169 62.1
Solyc02g011860.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.6e-40 167.5 116 81.0
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.3e-38 161.8 88 98.9
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 3.4e-37 159.1 143 67.1
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 1.1e-35 154.1 142 64.8
CAN.G134.9 Capsicum annuum HOM05D001070 ORTHO05D002096 6.0e-34 148.3 181 55.8
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 2.3e-33 146.4 121 71.9
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 2.2e-28 129.8 155 56.1
Oeu022558.1 Olea europaea HOM05D001070 ORTHO05D002096 2.2e-28 129.8 137 63.5
Oeu010690.1 Olea europaea HOM05D001070 ORTHO05D002096 1.4e-27 127.1 136 61.0
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 4.2e-27 125.6 108 74.1
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 4.2e-27 125.6 108 74.1
Nitab4.5_0001152g0850 Nicotiana tabacum HOM05D011856 ORTHO05D013014 2.1e-26 123.2 140 51.4
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 7.9e-26 121.3 144 59.7
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 7.9e-26 121.3 144 59.7
Oeu023335.1 Olea europaea HOM05D001070 ORTHO05D002096 1.5e-24 117.1 123 61.0
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.8e-23 112.8 73 80.8
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 9.0e-22 107.8 61 95.1
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 2.6e-21 106.3 97 67.0
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-21 105.5 64 89.1
Sed0027483 Sechium edule HOM05D001070 ORTHO05D010233 5.8e-21 105.1 188 43.6
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.9e-20 102.8 144 53.5
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.9e-20 102.1 145 53.1
Oeu051132.1 Olea europaea HOM05D011856 ORTHO05D013014 4.2e-19 99.0 44 100.0
MELO3C001082.2 Cucumis melo HOM05D011856 ORTHO05D013014 2.1e-18 96.7 43 100.0
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 2.1e-18 96.7 110 56.4
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 6.0e-18 95.1 144 48.6
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 7.9e-18 94.7 138 51.4
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.0e-17 94.4 100 62.0
MELO3C025036.2 Cucumis melo HOM05D011856 ORTHO05D013014 1.3e-17 94.0 43 97.7
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 1.8e-17 93.6 132 55.3
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 1.8e-17 93.6 143 51.7
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 1.8e-17 93.6 132 55.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.8e-17 93.6 137 51.8
TAR624G0722 Trochodendron aralioides HOM05D001070 ORTHO05D002096 3.9e-17 92.4 139 51.1
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 6.7e-17 91.7 289 33.2
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 8.7e-17 91.3 79 69.6
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.5e-16 90.5 138 53.6
Lsat_1_v5_gn_1_88141 Lactuca sativa HOM05D011856 ORTHO05D013014 1.5e-16 90.5 47 91.5
Lsat_1_v5_gn_2_97160 Lactuca sativa HOM05D011856 ORTHO05D013014 1.5e-16 90.5 47 91.5
Lsat_1_v5_gn_3_45940 Lactuca sativa HOM05D011856 ORTHO05D013014 1.5e-16 90.5 47 91.5
Lsat_1_v5_gn_5_181940 Lactuca sativa HOM05D011856 ORTHO05D013014 1.5e-16 90.5 47 91.5
Lsat_1_v5_gn_5_47101 Lactuca sativa HOM05D011856 ORTHO05D013014 1.5e-16 90.5 47 91.5
TAR626G0349 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.5e-16 90.5 137 51.1
Nitab4.5_0023521g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.9e-16 90.1 41 97.6
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 3.3e-16 89.4 157 47.8
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 4.3e-16 89.0 130 53.1
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 7.4e-16 88.2 72 77.8
Cpa.g.sc58.91 Carica papaya HOM05D000001 ORTHO05D000003 4.8e-15 85.5 47 87.2
Nitab4.5_0004137g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.8e-15 85.5 102 52.0
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.0e-14 81.3 89 61.8
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.5e-13 80.5 55 67.3
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 2.0e-13 80.1 93 57.0
arahy.Tifrunner.gnm1.ann1.YQIM92 Arachis hypogaea HOM05D011856 ORTHO05D013014 4.5e-13 79.0 43 81.4
Peaxi162Scf00629g00021 Petunia axillaris HOM05D001032 ORTHO05D000907 1.3e-12 77.4 93 53.8
arahy.Tifrunner.gnm1.ann1.3KQL5I Arachis hypogaea HOM05D000216 ORTHO05D003518 1.7e-12 77.0 40 85.0
Peaxi162Scf00080g00514 Petunia axillaris HOM05D011856 ORTHO05D013014 2.2e-12 76.6 43 83.7
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 2.2e-12 76.6 112 46.4
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.9e-12 76.3 77 67.5
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 2.9e-12 76.3 77 67.5
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 3.8e-12 75.9 73 69.9
Solyc08g043160.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.8e-12 75.9 49 87.8
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 8.4e-12 74.7 136 49.3
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 8.4e-12 74.7 143 44.8
Nitab4.5_0003632g0010 Nicotiana tabacum HOM05D008537 ORTHO05D010652 8.4e-12 74.7 36 97.2
ScUNg0001540 Simmondsia chinensis HOM05D001070 ORTHO05D002096 8.4e-12 74.7 85 62.4
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 1.1e-11 74.3 147 44.2
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.4e-11 73.9 100 55.0
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 1.9e-11 73.6 85 63.5
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 1.9e-11 73.6 61 73.8
Sc04g0003130 Simmondsia chinensis HOM05D001070 ORTHO05D002096 4.2e-11 72.4 117 47.9
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 9.3e-11 71.2 85 62.4
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.2e-10 70.9 83 61.4
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 1.2e-10 70.9 62 72.6
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 1.6e-10 70.5 143 42.7
Sed0000142 Sechium edule HOM05D001070 ORTHO05D002096 3.5e-10 69.3 136 47.8
Migut.G00824 Erythranthe guttata HOM05D011856 ORTHO05D013014 6.1e-10 68.6 34 88.2
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 1.0e-09 67.8 127 46.5
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.4 141 43.3
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 1.3e-09 67.4 141 43.3
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.8e-09 67.0 138 42.8
BraSC59t46545Z Brassica rapa HOM05D001070 ORTHO05D002096 1.8e-09 67.0 140 43.6
BraSC143t45653Z Brassica rapa HOM05D001070 ORTHO05D002096 2.3e-09 66.6 137 43.1
BolC9t56919H Brassica oleracea HOM05D001070 ORTHO05D002096 3.0e-09 66.2 137 43.1
Sed0025623 Sechium edule HOM05D001070 ORTHO05D002096 8.7e-09 64.7 125 47.2
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 1.9e-08 63.5 63 73.0
BraSC58t46457Z Brassica rapa HOM05D001070 ORTHO05D002096 1.3e-07 60.8 43 62.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 2.2e-07 60.1 139 41.0
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 2.2e-07 60.1 139 41.0
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 2.8e-07 59.7 138 41.3
HanXRQChr17g0557821 Helianthus annuus HOM05D001070 ORTHO05D002096 2.8e-07 59.7 24 100.0
PSO478G1394 Papaver somniferum HOM05D001070 ORTHO05D002096 2.8e-07 59.7 63 68.3
AT2G07565 Arabidopsis thaliana HOM05D001070 ORTHO05D002096 2.4e-06 56.6 136 40.4
EL10Ac2g02883 Beta vulgaris HOM05D001070 ORTHO05D002096 4.1e-06 55.8 25 92.0
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 4.1e-06 55.8 46 69.6


User provided reference genes

Program Settings