Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.1e-86 322.4 167 100.0
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.1e-86 322.4 167 100.0
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.1e-86 322.4 167 100.0
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.1e-86 322.4 167 100.0
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 2.1e-86 322.4 167 100.0
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 2.8e-51 205.7 111 97.3
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 1.6e-43 179.9 101 90.1
Medtr3g035650 Medicago truncatula HOM05D000963 ORTHO05D005131 6.7e-37 157.9 111 76.6
VMungo1215G3364 Vigna mungo HOM05D001592 ORTHO05D001533 5.7e-28 128.3 76 81.6
Medtr8g040260 Medicago truncatula HOM05D000963 ORTHO05D005131 1.7e-27 126.7 98 69.4
VMungo0464G1437 Vigna mungo HOM05D000963 ORTHO05D005131 4.8e-27 125.2 66 90.9
C06p23110 Brassica napus HOM05D000963 ORTHO05D005131 8.2e-27 124.4 72 86.1
C09p24700 Brassica napus HOM05D000963 ORTHO05D005131 8.2e-27 124.4 72 86.1
BraSC143t45666Z Brassica rapa HOM05D000963 ORTHO05D005131 8.2e-27 124.4 72 86.1
BraSC25t45900Z Brassica rapa HOM05D000963 ORTHO05D005131 8.2e-27 124.4 72 86.1
arahy.Tifrunner.gnm1.ann1.R4PVYI Arachis hypogaea HOM05D000963 ORTHO05D004715 2.4e-26 122.9 66 89.4
VMungo0720G2312 Vigna mungo HOM05D000963 ORTHO05D005131 1.2e-25 120.6 110 60.0
SabraMtG0005800 Salix brachista HOM05D000963 ORTHO05D011791 2.0e-25 119.8 99 69.7
Sopen08g004620 Solanum pennellii HOM05D001396 ORTHO05D000493 1.4e-23 113.6 61 90.2
Sed0026848 Sechium edule HOM05D000963 ORTHO05D005131 1.2e-22 110.5 59 89.8
arahy.Tifrunner.gnm1.ann1.7DQW64 Arachis hypogaea HOM05D000963 ORTHO05D005131 1.6e-22 110.2 92 63.0
Sc25g0002260 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.1e-22 108.2 64 82.8
CsaV3_4G036830 Cucumis sativus L. HOM05D000963 ORTHO05D005131 1.0e-21 107.5 59 88.1
Sopen11g020200 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-21 106.7 70 78.6
Ca_03776_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.9e-21 105.5 59 86.4
Ca_03777_v3 Cicer arietinum L. HOM05D000963 ORTHO05D005131 3.9e-21 105.5 59 86.4
arahy.Tifrunner.gnm1.ann1.LAST4K Arachis hypogaea HOM05D000963 ORTHO05D005131 1.5e-20 103.6 69 75.4
Sopen01g026990 Solanum pennellii HOM05D000963 ORTHO05D005131 2.2e-19 99.8 66 75.8
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 5.3e-18 95.1 64 82.8
arahy.Tifrunner.gnm1.ann1.GV9JXL Arachis hypogaea HOM05D000743 ORTHO05D005131 3.5e-17 92.4 53 84.9
Glyma.05G084600 Glycine max HOM05D000963 ORTHO05D005131 4.5e-17 92.0 86 54.7
SHI36889 Sapria himalayana HOM05D000963 ORTHO05D005131 4.5e-17 92.0 115 55.7
Gohir.1Z049680 Gossypium hirsutum HOM05D000963 ORTHO05D005131 7.7e-17 91.3 102 52.0
Nitab4.5_0001950g0020 Nicotiana tabacum HOM05D000963 ORTHO05D005131 2.9e-16 89.4 43 97.7
LjContig00319g0011411 Lotus japonicus HOM05D000963 ORTHO05D005131 3.8e-16 89.0 57 87.7
SGA_v2.0_scaffold140G35502 Striga asiatica HOM05D000963 ORTHO05D005131 8.5e-16 87.8 42 95.2
HanXRQCPg0580421 Helianthus annuus HOM05D000963 ORTHO05D005131 5.5e-15 85.1 44 93.2
Lalb_Chr07g0191621 Lupinus albus HOM05D000963 ORTHO05D005131 7.2e-15 84.7 50 80.0
AL2G21830 Arabidopsis lyrata HOM05D000963 ORTHO05D026832 2.7e-14 82.8 45 93.3
BraSC59t46558Z Brassica rapa HOM05D000963 ORTHO05D005131 8.0e-14 81.3 57 73.7
Phvul.002G028400 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 2.3e-13 79.7 46 82.6
Sopen06g013430 Solanum pennellii HOM05D000963 ORTHO05D026832 3.0e-13 79.3 40 97.5
HanXRQCPg0580291 Helianthus annuus HOM05D001325 ORTHO05D001540 4.0e-13 79.0 51 82.4
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 1.2e-12 77.4 53 75.5
EL10Ac1g01995 Beta vulgaris HOM05D000411 ORTHO05D000310 1.3e-11 73.9 43 86.0
TPR.G8529 Trifolium pratense HOM05D000060 ORTHO05D000082 1.3e-11 73.9 51 76.5
SGA_v2.0_scaffold507G52591 Striga asiatica HOM05D000963 ORTHO05D005131 2.2e-11 73.2 65 67.7
Lalb_Chr23g0274751 Lupinus albus HOM05D000963 ORTHO05D005131 6.3e-11 71.6 51 74.5
Phvul.003G113100 Phaseolus vulgaris HOM05D000963 ORTHO05D026832 6.3e-11 71.6 44 81.8
CsaV3_UNG207940 Cucumis sativus L. HOM05D019464 ORTHO05D015988 8.2e-11 71.2 70 57.1
Gohir.D07G041825 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.2e-11 71.2 85 49.4
Sopen06g013420 Solanum pennellii HOM05D000963 ORTHO05D026832 1.1e-10 70.9 39 87.2
Gorai.001G044400 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.1e-10 69.3 96 45.8
Gorai.002G152100 Gossypium raimondii HOM05D000963 ORTHO05D005131 3.1e-10 69.3 41 82.9
Gohir.D01G121360 Gossypium hirsutum HOM05D000963 ORTHO05D005131 4.1e-10 68.9 41 82.9
Manes.02G203601 Manihot esculenta HOM05D000963 ORTHO05D005131 7.0e-10 68.2 63 55.6
arahy.Tifrunner.gnm1.ann1.MJQ8WH Arachis hypogaea HOM05D000963 ORTHO05D011117 1.2e-09 67.4 73 53.4
Solyc11g045440.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 2.0e-09 66.6 80 48.8
Gohir.D03G126350 Gossypium hirsutum HOM05D000963 ORTHO05D005131 3.5e-09 65.9 36 88.9
ClCG04G004700 Citrullus lanatus HOM05D000963 ORTHO05D005131 4.5e-09 65.5 50 70.0
arahy.Tifrunner.gnm1.ann1.9MQ674 Arachis hypogaea HOM05D000963 ORTHO05D005131 5.9e-09 65.1 45 80.0
Nitab4.5_0004841g0030 Nicotiana tabacum HOM05D000963 ORTHO05D005131 5.9e-09 65.1 31 93.5
Nitab4.5_0001152g0470 Nicotiana tabacum HOM05D019464 ORTHO05D015988 1.3e-08 63.9 76 48.7
SGA_v2.0_scaffold379G50347 Striga asiatica HOM05D008299 ORTHO05D010400 1.7e-08 63.5 36 86.1
BcaB02g10431 Brassica carinata HOM05D002965 ORTHO05D015988 5.0e-08 62.0 88 42.0
Sc11g0003820 Simmondsia chinensis HOM05D000963 ORTHO05D005131 6.5e-08 61.6 41 73.2
CSS0000719 Camellia sinensis var. sinensis HOM05D000963 ORTHO05D005131 9.4e-07 57.8 32 81.2
Phvul.002G090577 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 9.4e-07 57.8 32 81.2
Phvul.009G038366 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 9.4e-07 57.8 32 81.2
Phvul.009G090236 Phaseolus vulgaris HOM05D000963 ORTHO05D005131 9.4e-07 57.8 32 81.2
Medtr4g076920 Medicago truncatula HOM05D008922 ORTHO05D010978 4.7e-06 55.5 30 90.0
Gohir.A12G129550 Gossypium hirsutum HOM05D000963 ORTHO05D005131 8.0e-06 54.7 54 51.9
Sopen01g027140 Solanum pennellii HOM05D000963 ORTHO05D011117 8.0e-06 54.7 27 96.3


User provided reference genes

Program Settings