Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.8e-212 742.3 361 100.0
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 2.9e-202 708.4 383 91.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.1e-192 675.6 523 69.0
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 2.5e-190 668.7 362 90.6
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 7.6e-187 657.1 364 89.3
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 9.9e-187 656.8 364 89.3
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 9.9e-187 656.8 364 89.3
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 1.9e-185 652.5 361 88.1
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.2e-184 649.8 361 89.8
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.1e-184 649.0 366 88.5
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.1e-184 649.0 366 88.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 2.1e-184 649.0 365 89.3
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.6e-184 647.9 340 92.9
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 2.5e-182 642.1 363 88.7
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 5.8e-179 630.9 409 79.0
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-178 629.0 375 83.7
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 1.4e-177 626.3 419 76.4
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 2.5e-174 615.5 460 69.3
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.8e-173 612.1 525 64.2
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 2.8e-165 585.5 374 79.7
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.8e-165 584.7 405 75.8
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 3.1e-164 582.0 499 63.9
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 2.5e-158 562.4 566 56.7
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.4e-156 555.8 463 64.6
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 9.1e-148 527.3 411 67.6
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 7.7e-147 524.2 301 86.7
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 3.7e-141 505.4 491 57.2
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 2.4e-140 502.7 368 71.7
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 5.3e-140 501.5 382 68.1
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 6.5e-130 468.0 368 67.9
HanXRQChr11g0335431 Helianthus annuus HOM05D003430 ORTHO05D004809 4.2e-129 465.3 361 69.5
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 5.2e-127 458.4 535 50.8
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.0e-122 444.1 368 66.0
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 9.5e-113 411.0 216 90.7
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 9.5e-113 411.0 216 90.7
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 2.8e-112 409.5 546 47.6
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.6e-112 409.1 234 84.6
MBI05_g40995_MAGBIO Magnolia biondii HOM05D003430 ORTHO05D004809 2.4e-100 369.8 363 58.1
SabraMtG0000300 Salix brachista HOM05D003430 ORTHO05D004809 2.3e-98 363.2 188 91.0
Sc11g0004440 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.1e-97 360.9 189 89.9
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 2.5e-97 359.8 198 86.9
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 4.3e-97 359.0 178 100.0
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 5.6e-97 358.6 178 99.4
Lalb_Chr00c39g0409061 Lupinus albus HOM05D003430 ORTHO05D004809 2.1e-96 356.7 189 89.4
Lalb_Chr00c39g0409241 Lupinus albus HOM05D003430 ORTHO05D004809 2.1e-96 356.7 189 89.4
Lalb_Chr00c51g0413151 Lupinus albus HOM05D003430 ORTHO05D004809 2.1e-96 356.7 189 89.4
BolSC28t60376H Brassica oleracea HOM05D003430 ORTHO05D004809 1.1e-95 354.4 189 88.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 2.3e-95 353.2 320 60.6
arahy.Tifrunner.gnm1.ann1.13LUN9 Arachis hypogaea HOM05D003430 ORTHO05D004809 8.9e-95 351.3 189 87.8
arahy.Tifrunner.gnm1.ann1.2J3QCS Arachis hypogaea HOM05D003430 ORTHO05D004809 8.9e-95 351.3 189 87.8
arahy.Tifrunner.gnm1.ann1.4C4WEU Arachis hypogaea HOM05D003430 ORTHO05D004809 8.9e-95 351.3 189 87.8
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 4.4e-94 349.0 178 97.8
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 7.1e-92 341.7 178 96.1
Medtr0024s0150 Medicago truncatula HOM05D003430 ORTHO05D004809 2.7e-91 339.7 189 84.7
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.5e-89 334.0 178 93.8
ATR0559G258 Amborella trichopoda HOM05D003430 ORTHO05D004809 1.6e-88 330.5 189 83.6
SHI29635 Sapria himalayana HOM05D003430 ORTHO05D004809 5.2e-87 325.5 176 88.6
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 1.3e-85 320.9 178 90.4
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 5.4e-84 315.5 178 88.8
Zm00001eb435490 Zea mays HOM05D003430 ORTHO05D004809 7.1e-84 315.1 191 80.1
Zm00001eb436080 Zea mays HOM05D003430 ORTHO05D004809 7.1e-84 315.1 191 80.1
unitig_87.g27923 Utricularia gibba HOM05D003430 ORTHO05D004809 2.7e-83 313.2 165 90.3
Sp3g25660 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.3e-82 310.8 189 80.4
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 5.1e-82 308.9 178 89.9
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 6.6e-82 308.5 185 87.0
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 8.7e-82 308.1 178 87.6
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 2.5e-81 306.6 178 87.6
Cpa.g.c41010 Carica papaya HOM05D003430 ORTHO05D004809 3.3e-81 306.2 189 78.8
Lj2C1222T70 Lonicera japonica HOM05D003430 ORTHO05D004809 4.3e-81 305.8 164 87.2
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 7.3e-81 305.1 178 87.1
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 3.6e-80 302.8 182 86.3
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 8.1e-80 301.6 182 86.8
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 8.1e-80 301.6 182 86.8
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 8.1e-80 301.6 182 86.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 4.0e-79 299.3 182 86.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 2.0e-78 297.0 182 85.7
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 5.8e-78 295.4 182 85.7
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 7.6e-78 295.0 178 87.6
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 2.9e-77 293.1 182 84.6
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.3e-76 288.1 188 76.6
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 6.7e-74 282.0 178 79.2
arahy.Tifrunner.gnm1.ann1.Y9E1XU Arachis hypogaea HOM05D003430 ORTHO05D004809 5.6e-73 278.9 149 86.6
arahy.Tifrunner.gnm1.ann1.ZQA7LX Arachis hypogaea HOM05D003430 ORTHO05D004809 5.6e-73 278.9 149 86.6
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.6e-72 276.2 178 79.8
VMungo0044G0003 Vigna mungo HOM05D003430 ORTHO05D004809 6.9e-71 271.9 171 77.2
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.2e-69 266.9 178 79.2
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 8.4e-69 265.0 182 78.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 8.4e-69 265.0 182 78.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 8.4e-69 265.0 182 78.0
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 8.4e-69 265.0 182 78.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 1.1e-68 264.6 179 78.8
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.9e-68 263.8 169 81.1
CDE02G3943 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.1e-67 260.4 145 84.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 3.0e-66 256.5 178 78.1
Lj2C1222T53 Lonicera japonica HOM05D003430 ORTHO05D004809 2.8e-64 250.0 137 84.7
Solyc10g076630.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.2e-59 234.6 109 96.3
Peaxi162Scf00456g00036 Petunia axillaris HOM05D003430 ORTHO05D004809 1.8e-58 230.7 111 97.3
Pp3c4_28970 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.1e-57 228.0 206 62.1
Pp3c4_28972 Physcomitrium patens HOM05D003430 ORTHO05D004809 1.1e-57 228.0 206 62.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 4.3e-57 226.1 178 69.1
Aqoxy23s002 Aquilegia oxysepala HOM05D003430 ORTHO05D004809 9.6e-57 224.9 129 85.3
Lj6g0002337 Lotus japonicus HOM05D003430 ORTHO05D004809 2.9e-53 213.4 149 71.8
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.9e-50 203.0 181 58.6
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 3.3e-49 199.9 114 88.6
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.6e-48 197.6 118 85.6
BolSC28t60410H Brassica oleracea HOM05D003430 ORTHO05D004809 2.2e-48 197.2 136 67.6
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 8.2e-48 195.3 182 63.2
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 5.0e-45 186.0 118 82.2
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-45 186.0 173 59.0
Lj2C1222G56 Lonicera japonica HOM05D003430 ORTHO05D004809 7.2e-44 182.2 101 93.1
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 6.7e-42 175.6 139 67.6
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 2.6e-41 173.7 84 97.6
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 4.4e-41 172.9 113 80.5
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.7e-40 169.9 84 95.2
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.4e-39 167.2 79 98.7
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 5.9e-38 162.5 84 91.7
Nitab4.5_0000172g0960 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.8e-37 159.8 118 72.0
EL10Ac3g07005 Beta vulgaris HOM05D003430 ORTHO05D004809 1.1e-36 158.3 89 91.0
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.5e-36 157.1 153 62.1
SHI20518 Sapria himalayana HOM05D003430 ORTHO05D004809 2.2e-32 144.1 131 58.8
SHI03773 Sapria himalayana HOM05D003430 ORTHO05D004809 2.6e-30 137.1 187 43.9
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 4.2e-28 129.8 113 61.9
Solyc05g025700.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 1.0e-26 125.2 109 62.4
arahy.Tifrunner.gnm1.ann1.0UJ9QK Arachis hypogaea HOM05D003430 ORTHO05D004809 3.0e-26 123.6 126 61.1
Lalb_Chr21g0308991 Lupinus albus HOM05D002109 ORTHO05D002149 6.3e-24 115.9 72 77.8
Lsat_1_v5_gn_5_16620 Lactuca sativa HOM05D003430 ORTHO05D004809 5.3e-23 112.8 94 69.1
Solyc03g013370.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 3.8e-21 106.7 54 90.7
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.2e-17 95.1 59 79.7
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 5.7e-17 92.8 79 60.8
SHI20516 Sapria himalayana HOM05D003430 ORTHO05D004809 5.7e-17 92.8 88 60.2
SHI25675 Sapria himalayana HOM05D003430 ORTHO05D004809 8.3e-16 89.0 51 76.5
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 1.4e-15 88.2 53 79.2
SHI32119 Sapria himalayana HOM05D003430 ORTHO05D004809 2.0e-14 84.3 64 65.6
TPR.G22979 Trifolium pratense HOM05D000681 ORTHO05D007906 2.7e-14 84.0 42 92.9
SHI33657 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-13 79.7 161 34.8
Prupe.5G026600 Prunus persica HOM05D003430 ORTHO05D004809 6.5e-13 79.3 68 58.8
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 6.5e-13 79.3 100 52.0
SGA_v2.0_scaffold178G39492 Striga asiatica HOM05D003430 ORTHO05D004809 3.2e-12 77.0 53 62.3
TPR.G24362 Trifolium pratense HOM05D003430 ORTHO05D004809 3.2e-12 77.0 71 63.4
Nitab4.5_0000172g1190 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.6e-11 74.7 40 90.0
Nitab4.5_0000684g0110 Nicotiana tabacum HOM05D003430 ORTHO05D015169 4.7e-11 73.2 47 74.5
Solyc04g071020.1 Solanum lycopersicum HOM05D003430 ORTHO05D000314 8.0e-11 72.4 46 82.6
Mapoly0017s0010 Marchantia polymorpha HOM05D003430 ORTHO05D004809 1.4e-10 71.6 59 66.1
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 3.4e-09 67.0 37 83.8
C01p34960 Brassica napus HOM05D003430 ORTHO05D004809 8.3e-08 62.4 38 81.6
SalBow1G2589 Salvia bowleyana HOM05D003430 ORTHO05D004809 2.7e-06 57.4 28 89.3


User provided reference genes

Program Settings